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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97100 (53 seq.)
>W1711066581
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
365290
365374
+
Tyr
GTA
[ENA]
¡û
>W1711081638
LSSV01000038
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
172250
172168
-
Tyr
GTA
[ENA]
¡û
>W1711187081
LWOT01000054
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
152980
153064
+
Tyr
GTA
[ENA]
¡û
>W1711351230
MDCG01000205
Actinomycetota
Dietzia alimentaria [MDCG]
607
525
-
Tyr
GTA
[ENA]
¡û
>WENV180765537
ODIC01000032
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
7335
7252
-
Tyr
GTA
[ENA]
¢þ
>WENV180773384
ODIJ01000152
[ODIJ] human metagenome; G_DNA_Tongue dorsum
36175
36093
-
Tyr
GTA
[ENA]
¢þ
>WENV180805598
ODJH01000060
[ODJH] human metagenome; G_DNA_Tongue dorsum
21363
21445
+
Tyr
GTA
[ENA]
¢þ
>WENV180878631
ODLX01001286
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
463
546
+
Tyr
GTA
[ENA]
¢þ
>WENV180984443
ODVG01000762
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
216
299
+
Tyr
GTA
[ENA]
¢þ
>WENV181131695
OEGD01004469
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
161
244
+
Tyr
GTA
[ENA]
¢þ
>WENV181810236
OGSU01008408
[OGSU] human gut metagenome; fecal sample 7 from infant 5
117
34
-
Tyr
GTA
[ENA]
¢þ
>WENV182628943
OJKR01000090
[OJKR] metagenome; surface
4218
4135
-
Tyr
GTA
[ENA]
¢þ
>WENV182636302
OJKZ01002794
[OJKZ] metagenome; surface
4730
4813
+
Tyr
GTA
[ENA]
¢þ
>WENV182640307
OJLB01002227
[OJLB] metagenome; surface
398
315
-
Tyr
GTA
[ENA]
¢þ
>WENV182641158
OJLE01013231
[OJLE] metagenome; surface
200
117
-
Tyr
GTA
[ENA]
¢þ
>WENV182641541
OJLI01000405
[OJLI] metagenome; surface
655
572
-
Tyr
GTA
[ENA]
¢þ
>WENV182641794
OJLK01001012
[OJLK] metagenome; surface
92
175
+
Tyr
GTA
[ENA]
¢þ
>WENV182642371
OJLM01003335
[OJLM] metagenome; surface
1389
1306
-
Tyr
GTA
[ENA]
¢þ
>WENV182643148
OJLS01001964
[OJLS] metagenome; surface
1835
1920
+
Tyr
GTA
[ENA]
¢þ
>WENV182644233
OJLW01014666
[OJLW] metagenome; surface
1032
1115
+
Tyr
GTA
[ENA]
¢þ
>WENV182644506
OJLX01000841
[OJLX] metagenome; surface
803
720
-
Tyr
GTA
[ENA]
¢þ
>WENV182645210
OJLY01004541
[OJLY] metagenome; surface
3208
3291
+
Tyr
GTA
[ENA]
¢þ
>WENV182645655
OJLZ01000339
[OJLZ] metagenome; surface
6541
6624
+
Tyr
GTA
[ENA]
¢þ
>WENV182646289
OJMA01000964
[OJMA] metagenome; surface
1809
1726
-
Tyr
GTA
[ENA]
¢þ
>WENV182671730
OJNM01001787
[OJNM] metagenome; surface
1717
1800
+
Tyr
GTA
[ENA]
¢þ
>WENV182803005
OJUH01000066
[OJUH] human gut metagenome; human gut
29908
29825
-
Tyr
GTA
[ENA]
¢þ
>WENV182820773
OKAP01000117
[OKAP] human gut metagenome; human gut
17541
17624
+
Tyr
GTA
[ENA]
¢þ
>WENV182835536
OKFO01000073
[OKFO] human gut metagenome; human gut
41756
41839
+
Tyr
GTA
[ENA]
¢þ
>WENV183098263
OLNE01066902
[OLNE] human gut metagenome; faeces
332
250
-
Tyr
GTA
[ENA]
¢þ
>WENV170690992
LFRM01374696
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
294
378
+
Tyr
GTA
[ENA]
¢þ
>C181017357
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
2661776
2661694
-
Tyr
GTA
-
¡û
>C191114570
CP033896
Actinomycetota
Corynebacterium choanae 200CH [CP033896]
2555573
2555491
-
Tyr
GTA
-
¡û
>C141004776
CP006365
Actinomycetota
Corynebacterium argentoratense DSM 44202 [CP006365]
221059
221141
+
Tyr
GTA
[Ensembl]
¡û
>C09103340
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
2191990
2191906
-
Tyr
GTA
[Ensembl]
¡û
>W1911422537
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
3452282
3452364
+
Tyr
GTA
[ENA]
¡û
>W1911498431
OCTS01000002
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
311389
311307
-
Tyr
GTA
[ENA]
¡û
>W1911596604
PNHH01000007
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
85432
85349
-
Tyr
GTA
[ENA]
¡û
>W1810118369
PHQP01000007
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
9386
9470
+
Tyr
GTA
[ENA]
¡û
>W1810580861
QETM01000017
Actinomycetota
Dietzia maris AMT [QETM]
2694
2776
+
Tyr
GTA
[ENA]
¡û
>W1810623577
QHCV01000033
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
17149
17233
+
Tyr
GTA
[ENA]
¡û
>W1810721994
QNTT01000010
Actinomycetota
Dietzia maris SST1 [QNTT]
75258
75176
-
Tyr
GTA
[ENA]
¡û
>C151013226
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
403694
403776
+
Tyr
GTA
-
¡û
>C151084327
CP011541
Actinomycetota
Corynebacterium epidermidicanis DSM 45586 [CP011541]
367735
367817
+
Tyr
GTA
[Ensembl]
¡û
>W10113774
ADGN01000027
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
20317
20401
+
Tyr
GTA
[ENA]
¡û
>C11106276
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
2275952
2275868
-
Tyr
GTA
[Ensembl]
¡û
>W11117110
ADGN01000027
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
20317
20401
+
Tyr
GTA
[ENA]
¡û
>W1511461050
JVMD01000007
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
59760
59844
+
Tyr
GTA
[ENA]
¡û
>W1511523829
JYCR01000004
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
4876
4960
+
Tyr
GTA
[ENA]
¡û
>W1511523934
JYDD01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
180778
180862
+
Tyr
GTA
[ENA]
¡û
>W1511542014
JZEZ01000006
Actinomycetota
Corynebacterium argentoratense CNM 463/05 [JZEZ]
39676
39758
+
Tyr
GTA
[ENA]
¡û
>W1511542103
JZFA01000038
Actinomycetota
Corynebacterium argentoratense CNM 601/08 [JZFA]
12664
12746
+
Tyr
GTA
[ENA]
¡û
>W1610907151
LSCY01000013
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
365290
365374
+
Tyr
GTA
[ENA]
¡û
>W1610920473
LSSV01000038
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
172250
172168
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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