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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97638 (56 seq.)
>W1711385071
MEDR01000049
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
21171
21253
+
Leu
TAG
[ENA]
¡û
>W1711503331
MKTM01000031
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
8436
8354
-
Leu
TAG
[ENA]
¡û
>C171016699
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
1796859
1796775
-
Leu
TAG
-
¡û
>C171016700
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
1796186
1796102
-
Leu
TAG
-
¡û
>W131224686
AUCZ01000007
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
42988
42904
-
Leu
TAG
[ENA]
¡û
>WENV180833694
ODKD01000091
[ODKD] human metagenome; G_DNA_Supragingival plaque
28105
28187
+
Leu
TAG
[ENA]
¢þ
>WENV180845510
ODKT01000636
[ODKT] human metagenome; G_DNA_Supragingival plaque
13246
13164
-
Leu
TAG
[ENA]
¢þ
>WENV180927471
ODTM01000745
[ODTM] human metagenome; G_DNA_Supragingival plaque
7033
6951
-
Leu
TAG
[ENA]
¢þ
>WENV180933155
ODTQ01024256
[ODTQ] human metagenome; G_DNA_Buccal mucosa
359
277
-
Leu
TAG
[ENA]
¢þ
>W141093418
AVBI01000001
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
145436
145520
+
Leu
TAG
[ENA]
¡û
>W141094576
AVCS01000006
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
437772
437688
-
Leu
TAG
[ENA]
¡û
>WENV180973911
ODUW01026942
[ODUW] human metagenome; G_DNA_Supragingival plaque
1120
1038
-
Leu
TAG
[ENA]
¢þ
>WENV180983800
ODVF01040450
[ODVF] human metagenome; G_DNA_Supragingival plaque
86
168
+
Leu
TAG
[ENA]
¢þ
>W141096673
AVFO01000015
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
117779
117863
+
Leu
TAG
[ENA]
¡û
>W141097102
AVGG01000001
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
150846
150930
+
Leu
TAG
[ENA]
¡û
>WENV181007832
ODWE01000800
[ODWE] human metagenome; G_DNA_Supragingival plaque
13905
13823
-
Leu
TAG
[ENA]
¢þ
>WENV181049406
ODYD01000140
[ODYD] human metagenome; G_DNA_Supragingival plaque
14293
14211
-
Leu
TAG
[ENA]
¢þ
>WENV181070085
OEAE01000217
[OEAE] human metagenome; G_DNA_Supragingival plaque
13872
13790
-
Leu
TAG
[ENA]
¢þ
>WENV181084418
OEAV01215729
[OEAV] human metagenome; G_DNA_Supragingival plaque
230
148
-
Leu
TAG
[ENA]
¢þ
>WENV181113763
OEEL01100241
[OEEL] human metagenome; G_DNA_Tongue dorsum
143
61
-
Leu
TAG
[ENA]
¢þ
>WENV181178894
OEJT01000506
[OEJT] human metagenome; G_DNA_Supragingival plaque
12918
13000
+
Leu
TAG
[ENA]
¢þ
>WENV181402016
OFTY01000034
[OFTY] sludge metagenome; sludge
84142
84060
-
Leu
TAG
[ENA]
¢þ
>WENV181837485
OGVK01056910
[OGVK] freshwater metagenome; freshwater
431
349
-
Leu
TAG
[ENA]
¢þ
>WENV170228477
CEQG01014226
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17493
17409
-
Leu
TAG
[ENA]
¢þ
>WENV170559449
CXWL01123997
[CXWL] groundwater metagenome; biofilm material
8217
8301
+
Leu
TAG
[ENA]
¢þ
>WENV170559531
CXWL01127733
[CXWL] groundwater metagenome; biofilm material
167
83
-
Leu
TAG
[ENA]
¢þ
>C181047470
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
1675040
1675122
+
Leu
TAG
-
¡û
>C181175918
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
513310
513228
-
Leu
TAG
-
¡û
>C181196568
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
862559
862477
-
Leu
TAG
-
¡û
>C181202217
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
4679085
4679003
-
Leu
TAG
-
¡û
>C181202218
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
4678136
4678054
-
Leu
TAG
-
¡û
>C141012348
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
201745
201661
-
Leu
TAG
-
¡û
>W1910577950
JUIW01000005
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
136269
136351
+
Leu
TAG
[ENA]
¡û
>W1910577951
JUIW01000005
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
136529
136611
+
Leu
TAG
[ENA]
¡û
>W1910728190
MGWJ01000071
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
3517
3599
+
Leu
TAG
[ENA]
¡û
>W1911139364
NOXV01000214
Bacteroidota
Flavobacterium cyanobacteriorum TH021 [NOXV]
16942
17024
+
Leu
TAG
[ENA]
¡û
>W1810695786
QLST01000007
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
11536
11618
+
Leu
TAG
[ENA]
¡û
>W1810762829
QQAR01000001
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
86935
87017
+
Leu
TAG
[ENA]
¡û
>W1810762830
QQAR01000001
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
87174
87256
+
Leu
TAG
[ENA]
¡û
>W1511594970
LBMH01000003
Bacteroidota
Kordia zhangzhouensis MCCC 1A00726 [LBMH]
334477
334393
-
Leu
TAG
[ENA]
¡û
>C161042855
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
1796833
1796749
-
Leu
TAG
-
¡û
>C161042856
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
1796160
1796076
-
Leu
TAG
-
¡û
>W1610534990
JRLU01000007
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
14459
14543
+
Leu
TAG
[ENA]
¡û
>W1610535041
JRLW01000002
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
237247
237331
+
Leu
TAG
[ENA]
¡û
>W1610535194
JRLZ01000018
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
14128
14212
+
Leu
TAG
[ENA]
¡û
>W1710505792
FMTY01000004
Bacteroidota
Flavobacterium saliperosum [FMTY]
139777
139861
+
Leu
TAG
[ENA]
¡û
>W1710541064
FNYA01000005
Bacteroidota
Flavobacterium terrigena [FNYA]
196187
196271
+
Leu
TAG
[ENA]
¡û
>W1710549195
FOEI01000008
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
59090
59006
-
Leu
TAG
[ENA]
¡û
>W1710574098
FOYA01000001
Bacteroidota
Flavobacterium akiainvivens [FOYA]
170628
170710
+
Leu
TAG
[ENA]
¡û
>W1710574099
FOYA01000001
Bacteroidota
Flavobacterium akiainvivens [FOYA]
170923
171005
+
Leu
TAG
[ENA]
¡û
>W1710578210
FPBK01000001
Bacteroidota
Pustulibacterium marinum [FPBK]
593850
593932
+
Leu
TAG
[ENA]
¡û
>W1710588369
FQZH01000001
Bacteroidota
Flavobacterium haoranii [FQZH]
900588
900504
-
Leu
TAG
[ENA]
¡û
>W1710594126
FSRA01000002
Bacteroidota
Chitinophaga niabensis [FSRA]
371566
371650
+
Leu
TAG
[ENA]
¡û
>W1710637226
JRLU01000007
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
14459
14543
+
Leu
TAG
[ENA]
¡û
>W1710637277
JRLW01000002
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
237247
237331
+
Leu
TAG
[ENA]
¡û
>W1710637430
JRLZ01000018
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
14128
14212
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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