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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97648 (122 seq.)
>WENV180198016
OBAB01061650
[OBAB] human gut metagenome; faeces
64
148
+
Leu
TAG
[ENA]
¢þ
>WENV180208185
OBAI01082010
[OBAI] human gut metagenome; human gut
373
457
+
Leu
TAG
[ENA]
¢þ
>WENV180233825
OBCQ01001087
[OBCQ] human gut metagenome; human gut
1392
1308
-
Leu
TAG
[ENA]
¢þ
>WENV180300011
OBJD01003853
[OBJD] human gut metagenome; human gut
2216
2132
-
Leu
TAG
[ENA]
¢þ
>WENV180328462
OBKU01034385
[OBKU] human gut metagenome; human gut
68
152
+
Leu
TAG
[ENA]
¢þ
>WENV180336872
OBLG01006595
[OBLG] human gut metagenome; human gut
112
28
-
Leu
TAG
[ENA]
¢þ
>WENV180526349
OCHI01014284
[OCHI] human gut metagenome; human gut
201
285
+
Leu
TAG
[ENA]
¢þ
>WENV180601491
OCPQ01056005
[OCPQ] human gut metagenome; faeces
226
310
+
Leu
TAG
[ENA]
¢þ
>WENV180619565
OCQB01005830
[OCQB] human gut metagenome; human gut
235
319
+
Leu
TAG
[ENA]
¢þ
>WENV180632926
OCQZ01030417
[OCQZ] human gut metagenome; human gut
104
188
+
Leu
TAG
[ENA]
¢þ
>WENV180743095
ODHH01092490
[ODHH] human metagenome; G_DNA_Stool
97
13
-
Leu
TAG
[ENA]
¢þ
>WENV180761564
ODHZ01014800
[ODHZ] human metagenome; G_DNA_Stool
810
894
+
Leu
TAG
[ENA]
¢þ
>WENV180850672
ODKV01009383
[ODKV] human metagenome; G_DNA_Stool
1366
1282
-
Leu
TAG
[ENA]
¢þ
>WENV180869079
ODLM01004357
[ODLM] human metagenome; G_DNA_Stool
2977
2893
-
Leu
TAG
[ENA]
¢þ
>WENV180970767
ODUU01006638
[ODUU] human metagenome; G_DNA_Stool
2309
2225
-
Leu
TAG
[ENA]
¢þ
>WENV181054657
ODYI01008691
[ODYI] human metagenome; G_DNA_Stool
2238
2154
-
Leu
TAG
[ENA]
¢þ
>WENV181056473
ODYJ01006161
[ODYJ] human metagenome; G_DNA_Stool
698
782
+
Leu
TAG
[ENA]
¢þ
>WENV181118458
OEFH01013240
[OEFH] human metagenome; G_DNA_Stool
2205
2121
-
Leu
TAG
[ENA]
¢þ
>WENV181364190
OFOU01026362
[OFOU] human gut metagenome; human gut
601
685
+
Leu
TAG
[ENA]
¢þ
>WENV181478284
OGFF01023996
[OGFF] metagenome; Human gut stool
566
650
+
Leu
TAG
[ENA]
¢þ
>WENV181496059
OGGC01043493
[OGGC] metagenome; Human gut stool
27
111
+
Leu
TAG
[ENA]
¢þ
>WENV181611344
OGLR01005768
[OGLR] metagenome; Human gut stool
2212
2128
-
Leu
TAG
[ENA]
¢þ
>WENV181632620
OGMT01048131
[OGMT] metagenome; Human gut stool
4
88
+
Leu
TAG
[ENA]
¢þ
>WENV181637249
OGNB01002524
[OGNB] metagenome; Human gut stool
8398
8314
-
Leu
TAG
[ENA]
¢þ
>WENV181703755
OGPJ01024460
[OGPJ] human gut metagenome; faeces
1206
1290
+
Leu
TAG
[ENA]
¢þ
>WENV181713767
OGPR01000079
[OGPR] human gut metagenome; faeces
26399
26483
+
Leu
TAG
[ENA]
¢þ
>WENV181750375
OGQP01003932
[OGQP] human gut metagenome; faeces
4280
4364
+
Leu
TAG
[ENA]
¢þ
>WENV181765069
OGQY01002999
[OGQY] human gut metagenome; faeces
159
243
+
Leu
TAG
[ENA]
¢þ
>WENV181821990
OGUF01009239
[OGUF] metagenome; Human gut stool
679
595
-
Leu
TAG
[ENA]
¢þ
>WENV181824612
OGUK01004708
[OGUK] human gut metagenome; faeces
5059
4975
-
Leu
TAG
[ENA]
¢þ
>WENV181887864
OGXL01038392
[OGXL] human gut metagenome; faeces
703
619
-
Leu
TAG
[ENA]
¢þ
>WENV181898502
OGXT01005873
[OGXT] human gut metagenome; faeces
811
895
+
Leu
TAG
[ENA]
¢þ
>WENV181911686
OGYD01003349
[OGYD] human gut metagenome; faeces
4100
4016
-
Leu
TAG
[ENA]
¢þ
>WENV181943750
OGYZ01036292
[OGYZ] human gut metagenome; faeces
50
134
+
Leu
TAG
[ENA]
¢þ
>WENV181955962
OGZK01014271
[OGZK] human gut metagenome; faeces
1694
1778
+
Leu
TAG
[ENA]
¢þ
>WENV181988005
OHAN01002546
[OHAN] human gut metagenome; faeces
5896
5812
-
Leu
TAG
[ENA]
¢þ
>WENV181997384
OHAU01002011
[OHAU] human gut metagenome; faeces
2551
2467
-
Leu
TAG
[ENA]
¢þ
>WENV182030089
OHCR01000585
[OHCR] human gut metagenome; feces
15962
16046
+
Leu
TAG
[ENA]
¢þ
>WENV182042535
OHDN01007949
[OHDN] human gut metagenome; feces
435
519
+
Leu
TAG
[ENA]
¢þ
>WENV182062169
OHEU01023299
[OHEU] human gut metagenome; feces
77
161
+
Leu
TAG
[ENA]
¢þ
>WENV182140061
OHKP01034045
[OHKP] human gut metagenome; feces
547
631
+
Leu
TAG
[ENA]
¢þ
>WENV182180930
OHNO01033296
[OHNO] human gut metagenome; feces
635
719
+
Leu
TAG
[ENA]
¢þ
>WENV182181865
OHNQ01000162
[OHNQ] human gut metagenome; feces
10565
10481
-
Leu
TAG
[ENA]
¢þ
>WENV182200316
OHPL01000277
[OHPL] human gut metagenome; feces
2238
2154
-
Leu
TAG
[ENA]
¢þ
>WENV182203330
OHPP01006404
[OHPP] human gut metagenome; feces
151
235
+
Leu
TAG
[ENA]
¢þ
>WENV182211363
OHQF01000279
[OHQF] human gut metagenome; feces
2238
2154
-
Leu
TAG
[ENA]
¢þ
>WENV182213078
OHQG01047960
[OHQG] human gut metagenome; feces
413
497
+
Leu
TAG
[ENA]
¢þ
>WENV182214161
OHQI01010168
[OHQI] human gut metagenome; feces
1599
1683
+
Leu
TAG
[ENA]
¢þ
>WENV182229715
OHRJ01001705
[OHRJ] human gut metagenome; feces
3075
2991
-
Leu
TAG
[ENA]
¢þ
>WENV182254023
OHTB01000416
[OHTB] human gut metagenome; feces
9216
9132
-
Leu
TAG
[ENA]
¢þ
>WENV182537926
OIXH01025216
[OIXH] human gut metagenome; faeces
2228
2144
-
Leu
TAG
[ENA]
¢þ
>WENV182615304
OJKC01002254
[OJKC] metagenome; faeces
1288
1204
-
Leu
TAG
[ENA]
¢þ
>WENV182631487
OJKW01011254
[OJKW] metagenome; faeces
2883
2799
-
Leu
TAG
[ENA]
¢þ
>WENV182635273
OJKY01054173
[OJKY] metagenome; faeces
263
179
-
Leu
TAG
[ENA]
¢þ
>WENV182649195
OJMG01003770
[OJMG] human gut metagenome; feces
7246
7162
-
Leu
TAG
[ENA]
¢þ
>WENV182673123
OJNO01000567
[OJNO] human gut metagenome; human gut
78
162
+
Leu
TAG
[ENA]
¢þ
>WENV182694081
OJOH01047146
[OJOH] human gut metagenome; stool sample
158
242
+
Leu
TAG
[ENA]
¢þ
>WENV182721910
OJPP01010026
[OJPP] human gut metagenome; stool sample
662
578
-
Leu
TAG
[ENA]
¢þ
>WENV182754188
OJRD01002345
[OJRD] human gut metagenome; stool sample
4313
4397
+
Leu
TAG
[ENA]
¢þ
>WENV182763251
OJRO01002397
[OJRO] human gut metagenome; stool sample
9225
9309
+
Leu
TAG
[ENA]
¢þ
>WENV182796498
OJSQ01025957
[OJSQ] human gut metagenome; human gut
490
574
+
Leu
TAG
[ENA]
¢þ
>WENV182882567
OKSB01000776
[OKSB] human gut metagenome; faeces
28568
28652
+
Leu
TAG
[ENA]
¢þ
>WENV182885310
OKSC01004678
[OKSC] human gut metagenome; faeces
7523
7439
-
Leu
TAG
[ENA]
¢þ
>WENV182891815
OKSH01004883
[OKSH] human gut metagenome; faeces
4281
4197
-
Leu
TAG
[ENA]
¢þ
>WENV182911815
OKTL01007703
[OKTL] human gut metagenome; feces
395
479
+
Leu
TAG
[ENA]
¢þ
>WENV182916272
OKTT01000697
[OKTT] human gut metagenome; feces
7992
8076
+
Leu
TAG
[ENA]
¢þ
>WENV182942207
OKVH01000107
[OKVH] human gut metagenome; human gut
15505
15589
+
Leu
TAG
[ENA]
¢þ
>WENV183042533
OLGD01005356
[OLGD] human gut metagenome; faeces
3907
3991
+
Leu
TAG
[ENA]
¢þ
>WENV183047621
OLGF01009873
[OLGF] human gut metagenome; faeces
4570
4486
-
Leu
TAG
[ENA]
¢þ
>WENV183099038
OLNF01002832
[OLNF] human gut metagenome; faeces
9282
9198
-
Leu
TAG
[ENA]
¢þ
>WENV183113720
OLNP01031033
[OLNP] human gut metagenome; faeces
1214
1130
-
Leu
TAG
[ENA]
¢þ
>WENV183146029
OLOM01002635
[OLOM] human gut metagenome; faeces
1565
1649
+
Leu
TAG
[ENA]
¢þ
>WENV183155351
OLOS01000142
[OLOS] human gut metagenome; faeces
5987
6071
+
Leu
TAG
[ENA]
¢þ
>WENV183163647
OLOW01020000
[OLOW] human gut metagenome; faeces
189
273
+
Leu
TAG
[ENA]
¢þ
>WENV183169483
OLPA01003801
[OLPA] human gut metagenome; faeces
2856
2940
+
Leu
TAG
[ENA]
¢þ
>WENV183243663
OLRD01000514
[OLRD] human gut metagenome; faeces
21171
21255
+
Leu
TAG
[ENA]
¢þ
>WENV183280331
OLSB01003491
[OLSB] human gut metagenome; faeces
9560
9644
+
Leu
TAG
[ENA]
¢þ
>WENV183284418
OLSD01017554
[OLSD] human gut metagenome; faeces
2337
2421
+
Leu
TAG
[ENA]
¢þ
>WENV183293649
OLSK01001183
[OLSK] human gut metagenome; faeces
13906
13990
+
Leu
TAG
[ENA]
¢þ
>WENV183298169
OLSM01066919
[OLSM] human gut metagenome; faeces
456
372
-
Leu
TAG
[ENA]
¢þ
>WENV183299267
OLSN01004157
[OLSN] human gut metagenome; faeces
895
979
+
Leu
TAG
[ENA]
¢þ
>WENV183323888
OLVY01001197
[OLVY] human gut metagenome; feces
15186
15270
+
Leu
TAG
[ENA]
¢þ
>WENV183340766
OLWL01042031
[OLWL] human gut metagenome; feces
277
193
-
Leu
TAG
[ENA]
¢þ
>WENV183348226
OLWU01010509
[OLWU] human gut metagenome; feces
152
236
+
Leu
TAG
[ENA]
¢þ
>WENV183379822
OLYC01115375
[OLYC] human gut metagenome; feces
188
272
+
Leu
TAG
[ENA]
¢þ
>WENV183380639
OLYI01004437
[OLYI] human gut metagenome; feces
252
336
+
Leu
TAG
[ENA]
¢þ
>WENV183390656
OLZC01000478
[OLZC] human gut metagenome; feces
4253
4337
+
Leu
TAG
[ENA]
¢þ
>WENV183401252
OLZT01006983
[OLZT] human gut metagenome; feces
1621
1537
-
Leu
TAG
[ENA]
¢þ
>WENV183407793
OMAC01005985
[OMAC] human gut metagenome; feces
2020
1936
-
Leu
TAG
[ENA]
¢þ
>WENV183417144
OMAT01000183
[OMAT] human gut metagenome; feces
639
723
+
Leu
TAG
[ENA]
¢þ
>WENV183419327
OMAZ01000266
[OMAZ] human gut metagenome; feces
3992
4076
+
Leu
TAG
[ENA]
¢þ
>WENV183428118
OMBN01005101
[OMBN] human gut metagenome; feces
2020
1936
-
Leu
TAG
[ENA]
¢þ
>WENV183429250
OMBO01007465
[OMBO] human gut metagenome; feces
75
159
+
Leu
TAG
[ENA]
¢þ
>WENV183432901
OMBS01001456
[OMBS] human gut metagenome; feces
920
1004
+
Leu
TAG
[ENA]
¢þ
>WENV183455047
OMDG01000526
[OMDG] human gut metagenome; feces
240
324
+
Leu
TAG
[ENA]
¢þ
>WENV183462176
OMDW01000048
[OMDW] human gut metagenome; feces
24323
24407
+
Leu
TAG
[ENA]
¢þ
>WENV183467070
OMEC01057738
[OMEC] human gut metagenome; feces
99
15
-
Leu
TAG
[ENA]
¢þ
>WENV183468026
OMED01050149
[OMED] human gut metagenome; feces
105
189
+
Leu
TAG
[ENA]
¢þ
>WENV183473360
OMER01004825
[OMER] human gut metagenome; feces
2020
1936
-
Leu
TAG
[ENA]
¢þ
>WENV183476328
OMEX01001585
[OMEX] human gut metagenome; feces
127
211
+
Leu
TAG
[ENA]
¢þ
>WENV183484016
OMFO01000225
[OMFO] human gut metagenome; feces
4085
4169
+
Leu
TAG
[ENA]
¢þ
>WENV183488732
OMFZ01000429
[OMFZ] human gut metagenome; feces
4505
4589
+
Leu
TAG
[ENA]
¢þ
>WENV183520074
OMNT01005044
[OMNT] human gut metagenome; faeces
4946
5030
+
Leu
TAG
[ENA]
¢þ
>WENV183555749
OOBN01011631
[OOBN] human gut metagenome; human gut
942
858
-
Leu
TAG
[ENA]
¢þ
>WENV183556092
OOBN01070152
[OOBN] human gut metagenome; human gut
626
542
-
Leu
TAG
[ENA]
¢þ
>WENV183568331
OOCB01002895
[OOCB] human gut metagenome; human gut
822
738
-
Leu
TAG
[ENA]
¢þ
>WENV183568967
OOCB01010394
[OOCB] human gut metagenome; human gut
1904
1820
-
Leu
TAG
[ENA]
¢þ
>WENV183575751
OOCI01006896
[OOCI] human gut metagenome; human gut
3510
3594
+
Leu
TAG
[ENA]
¢þ
>WENV183580280
OOCM01046947
[OOCM] human gut metagenome; human gut
757
676
-
Leu
TAG
[ENA]
¢þ
>WENV183632653
OOIF01009939
[OOIF] human gut metagenome; human gut
1454
1370
-
Leu
TAG
[ENA]
¢þ
>WENV183650268
OQVT01015960
[OQVT] human gut metagenome; human gut
2552
2468
-
Leu
TAG
[ENA]
¢þ
>WENV183652242
OQVU01024846
[OQVU] human gut metagenome; human gut
85
169
+
Leu
TAG
[ENA]
¢þ
>WENV183657511
OQWI01014753
[OQWI] human gut metagenome; human gut
417
501
+
Leu
TAG
[ENA]
¢þ
>WENV183659287
OQWM01018001
[OQWM] human gut metagenome; human gut
2555
2471
-
Leu
TAG
[ENA]
¢þ
>WENV183659994
OQWM01093960
[OQWM] human gut metagenome; human gut
647
563
-
Leu
TAG
[ENA]
¢þ
>WENV183767095
PPYE01360616
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
10351
10267
-
Leu
TAG
[ENA]
¢þ
>WENV183786693
PPYF01306002
[PPYF] human gut metagenome; stool from patient with Crohn's disease
18296
18212
-
Leu
TAG
[ENA]
¢þ
>WENV170074932
CDZT01015959
[CDZT] gut metagenome; human stools
8661
8745
+
Leu
TAG
[ENA]
¢þ
>WENV170078337
CDZV01020079
[CDZV] gut metagenome; human stools
1721
1805
+
Leu
TAG
[ENA]
¢þ
>W1510669500
CWJP01000009
Bacillota
Intestinimonas massiliensis (ex Afouda et al. 2020) GD2 [CWJP]
1479642
1479726
+
Leu
TAG
[ENA]
¡û
>W1610102973
CZAT01000006
Bacillota
Flavonifractor plautii [CZAT]
132440
132356
-
Leu
TAG
[ENA]
¡û
>W1710105728
CZAT01000006
Bacillota
Flavonifractor plautii [CZAT]
132440
132356
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK