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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97676 (44 seq.)
>W1711505911
MKVY01000029
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
76986
76902
-
Leu
CAG
[ENA]
¡û
>W131163793
ARAA01000069
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
190569
190653
+
Leu
CAG
[ENA]
¡û
>w026455
ABAY01000003
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
28042
27961
-
Leu
CAG
[ENA]
¡û
>WENV180021541
FTEP01000272
[FTEP] metagenome; soil
2966
2882
-
Leu
CAG
[ENA]
¢þ
>WENV180021979
FTFH01001166
[FTFH] metagenome; soil
274
190
-
Leu
CAG
[ENA]
¢þ
>WENV180031225
FTJO01010050
[FTJO] metagenome; soil
761
845
+
Leu
CAG
[ENA]
¢þ
>WENV180690610
OCZS010014395
[OCZS] soil metagenome; soil
238
154
-
Leu
CAG
[ENA]
¢þ
>WENV180694204
OCZS012074537
[OCZS] soil metagenome; soil
71
155
+
Leu
CAG
[ENA]
¢þ
>WENV181166309
OEIU01000071
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
60671
60587
-
Leu
CAG
[ENA]
¢þ
>WENV181166376
OEIU01000162
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
22388
22304
-
Leu
CAG
[ENA]
¢þ
>WENV181166649
OEIU01000984
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
7539
7623
+
Leu
CAG
[ENA]
¢þ
>WENV181233928
OFET01000326
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
675
591
-
Leu
CAG
[ENA]
¢þ
>WENV181234244
OFEU01000013
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
136957
137041
+
Leu
CAG
[ENA]
¢þ
>WENV183726225
PJQF01125741
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
244
160
-
Leu
CAG
[ENA]
¢þ
>WENV170010999
APMI01038620
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1008
924
-
Leu
CAG
[ENA]
¢þ
>WENV170653167
JRYI01009247
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1454
1370
-
Leu
CAG
[ENA]
¢þ
>WENV170974355
MTKY01058566
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4368
4284
-
Leu
CAG
[ENA]
¢þ
>C181180249
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
994566
994482
-
Leu
CAG
-
¡û
>C181180250
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
988528
988444
-
Leu
CAG
-
¡û
>C191005711
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
169136
169052
-
Leu
CAG
-
¡û
>W141821078
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
3764132
3764048
-
Leu
CAG
[ENA]
¡û
>C09107820
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
1501748
1501832
+
Leu
CAG
[Ensembl]
¡û
>W1911148439
NPEW01000003
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
52416
52332
-
Leu
CAG
[ENA]
¡û
>W1810079850
PELK01000009
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
612
696
+
Leu
CAG
[ENA]
¡û
>W1810079878
PELK01001186
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
88
4
-
Leu
CAG
[ENA]
¡û
>W1810534721
QDAH01000009
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
103189
103273
+
Leu
CAG
[ENA]
¡û
>W1511400923
JTHG01000015
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
2528
2444
-
Leu
CAG
[ENA]
¡û
>W1511400924
JTHG01000015
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
886
802
-
Leu
CAG
[ENA]
¡û
>W1511624250
LCYG01000016
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
98434
98518
+
Leu
CAG
[ENA]
¡û
>C161001189
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
2782156
2782072
-
Leu
CAG
[Ensembl]
¡û
>C161001190
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
2780518
2780434
-
Leu
CAG
[Ensembl]
¡û
>W1610047422
BBDG01001537
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
95
179
+
Leu
CAG
[ENA]
¡û
>W1610590456
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
29226
29142
-
Leu
CAG
[ENA]
¡û
>W1610590457
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
27584
27500
-
Leu
CAG
[ENA]
¡û
>W1610590486
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
22336
22420
+
Leu
CAG
[ENA]
¡û
>W1610590487
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
23978
24062
+
Leu
CAG
[ENA]
¡û
>W1710044027
BBDG01001537
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
95
179
+
Leu
CAG
[ENA]
¡û
>W1710548848
FOEB01000033
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
12968
13052
+
Leu
CAG
[ENA]
¡û
>W1710579040
FPCB01000007
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
83115
83031
-
Leu
CAG
[ENA]
¡û
>W1710579041
FPCB01000007
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
82453
82369
-
Leu
CAG
[ENA]
¡û
>W1710709736
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
29226
29142
-
Leu
CAG
[ENA]
¡û
>W1710709737
LDRL01000212
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
27584
27500
-
Leu
CAG
[ENA]
¡û
>W1710709766
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
22336
22420
+
Leu
CAG
[ENA]
¡û
>W1710709767
LDRM01000044
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
23978
24062
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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