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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97821 (42 seq.)
>W1710808992
LKEC01000024
Alphaproteobacteria
Brucella melitensis [LKEC]
5096
5180
+
Tyr
GTA
[ENA]
¡û
>W1711430778
MIJH01000022
Alphaproteobacteria
Brucella abortus [MIJH]
323
239
-
Tyr
GTA
[ENA]
¡û
>C171080606
CP018494
Alphaproteobacteria
Brucella melitensis BwIM_ITA_45 [CP018494, CP018495]
1239185
1239101
-
Tyr
GTA
-
¡û
>W131146522
AQIC01000001
Alphaproteobacteria
Brucella melitensis B115 [AQIC]
363936
364020
+
Tyr
GTA
[ENA]
¡û
>W131146935
AQIJ01000010
Alphaproteobacteria
Brucella ovis IntaBari-2010-47-871 [AQIJ]
1498
1414
-
Tyr
GTA
[ENA]
¡û
>W131148365
AQJI01000006
Alphaproteobacteria
Brucella abortus 84/26 [AQJI]
274906
274822
-
Tyr
GTA
[ENA]
¡û
>W131149261
AQJY01000002
Alphaproteobacteria
Brucella canis 79/122 [AQJY]
275672
275588
-
Tyr
GTA
[ENA]
¡û
>W131149668
AQKG01000007
Alphaproteobacteria
Brucella melitensis UK22/04 [AQKG]
343165
343249
+
Tyr
GTA
[ENA]
¡û
>W131149715
AQKH01000004
Alphaproteobacteria
Brucella melitensis UK23/06 [AQKH]
343320
343404
+
Tyr
GTA
[ENA]
¡û
>W131150223
AQKQ01000009
Alphaproteobacteria
Brucella sp. 63/311 [AQKQ]
265973
265889
-
Tyr
GTA
[ENA]
¡û
>W131150839
AQLB01000003
Alphaproteobacteria
Brucella suis F12/02 [AQLB]
485472
485388
-
Tyr
GTA
[ENA]
¡û
>W131152479
AQMF01000002
Alphaproteobacteria
Brucella abortus F3/01-300 [AQMF]
1159904
1159820
-
Tyr
GTA
[ENA]
¡û
>W131152541
AQMG01000005
Alphaproteobacteria
Brucella abortus F3/07-1 [AQMG]
275492
275408
-
Tyr
GTA
[ENA]
¡û
>W131152649
AQMI01000005
Alphaproteobacteria
Brucella abortus levi gila [AQMI]
145406
145322
-
Tyr
GTA
[ENA]
¡û
>W131152857
AQMM01000001
Alphaproteobacteria
Brucella abortus NI380 [AQMM]
1158673
1158589
-
Tyr
GTA
[ENA]
¡û
>W131153503
AQMY01000001
Alphaproteobacteria
Brucella canis CNGB 1172 [AQMY]
1186859
1186775
-
Tyr
GTA
[ENA]
¡û
>W131153555
AQMZ01000001
Alphaproteobacteria
Brucella canis CNGB 1324 [AQMZ]
1069291
1069207
-
Tyr
GTA
[ENA]
¡û
>W131154733
AQNV01000001
Alphaproteobacteria
Brucella suis 92/63 [AQNV]
1178323
1178239
-
Tyr
GTA
[ENA]
¡û
>W131190840
ASGW01000008
Alphaproteobacteria
Brucella abortus Feb-93 [ASGW]
275186
275102
-
Tyr
GTA
[ENA]
¡û
>W131207833
ATGY01000002
Alphaproteobacteria
Brucella abortus 87-2211 [ATGY]
885835
885919
+
Tyr
GTA
[ENA]
¡û
>WENV181316093
OFJS01009034
[OFJS] marine metagenome; sea ice
410
326
-
Tyr
GTA
[ENA]
¢þ
>WENV181323786
OFKZ01005155
[OFKZ] marine metagenome; sea ice
369
453
+
Tyr
GTA
[ENA]
¢þ
>WENV170962523
MRWF01019326
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
220
304
+
Tyr
GTA
[ENA]
¢þ
>WENV170963556
MRWG01000287
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
76040
76124
+
Tyr
GTA
[ENA]
¢þ
>C181158103
CP027643
Alphaproteobacteria
Brucella canis GB1 [CP027642, CP027643]
1922307
1922391
+
Tyr
GTA
-
¡û
>C181228001
LT962914
Alphaproteobacteria
Brucella melitensis [LT962914, LT962915]
767809
767893
+
Tyr
GTA
-
¡û
>C181228109
LT962918
Alphaproteobacteria
Brucella melitensis [LT962918, LT962919]
767888
767972
+
Tyr
GTA
-
¡û
>C181229091
LT962953
Alphaproteobacteria
Brucella melitensis [LT962953, LT962954]
767803
767887
+
Tyr
GTA
-
¡û
>W141713015
JMSB01000040
Alphaproteobacteria
Brucella abortus bv. 4 str. 292 [JMSB]
363918
364002
+
Tyr
GTA
[ENA]
¡û
>W1910755513
MKXK01000017
Alphaproteobacteria
Brucella sp. CMUL 018 [MKXK]
83274
83190
-
Tyr
GTA
[ENA]
¡û
>C09102507
CP001578
Alphaproteobacteria
Brucella microti CCM 4915 [CP001578, CP001579]
1226589
1226505
-
Tyr
GTA
[Ensembl]
¡û
>W1911569060
PCQR01000001
Alphaproteobacteria
Ochrobactrum sp. 720/2009 [PCQR]
764750
764834
+
Tyr
GTA
[ENA]
¡û
>W1810110860
PHIG01000041
Alphaproteobacteria
Minwuia thermotolerans SY3-13 [PHIG]
12908
12992
+
Tyr
GTA
[ENA]
¡û
>W1810138075
PIGG01000075
Alphaproteobacteria
Minwuia thermotolerans SY3-15 [PIGG]
12908
12992
+
Tyr
GTA
[ENA]
¡û
>C151032393
CP007697
Alphaproteobacteria
Brucella suis bv. 2 Bs364CITA [CP007697, CP007698]
1237370
1237286
-
Tyr
GTA
[Ensembl]
¡û
>C151032859
CP007717
Alphaproteobacteria
Brucella suis 513UK [CP007716, CP007717]
507867
507783
-
Tyr
GTA
[Ensembl]
¡û
>W1510071194
CDGF01000006
Alphaproteobacteria
Brucella melitensis [CDGF]
5337
5421
+
Tyr
GTA
[ENA]
¡û
>C161094042
CP016093
Alphaproteobacteria
Rhizobiales bacterium NRL2 [CP016093]
4675565
4675481
-
Tyr
GTA
-
¡û
>W121020696
AGVF01000001
Alphaproteobacteria
Brucella abortus bv. 1 str. NI435a [AGVF]
370147
370231
+
Tyr
GTA
[ENA]
¡û
>W121043595
AHWB01000027
Alphaproteobacteria
Brucella melitensis S66 [AHWB]
343
259
-
Tyr
GTA
[ENA]
¡û
>W1610673049
LKEC01000024
Alphaproteobacteria
Brucella melitensis [LKEC]
5096
5180
+
Tyr
GTA
[ENA]
¡û
>W1710713281
LDTX01000047
Alphaproteobacteria
Brucella melitensis [LDTX]
5191
5275
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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