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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97838 (45 seq.)
>W1711642825
MPZQ01000001
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
783815
783729
-
Leu
GAG
[ENA]
¡û
>W1711643005
MPZU01000001
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
788449
788363
-
Leu
GAG
[ENA]
¡û
>W1711947235
NBNY01000001
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
1478528
1478442
-
Leu
GAG
[ENA]
¡û
>W1711947277
NBNZ01000001
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
780390
780304
-
Leu
GAG
[ENA]
¡û
>PL171000243
CP000376
Alphaproteobacteria
Ruegeria sp. TM1040 plasmid:megaplasmid
56119
56033
-
Leu
GAG
[Ensembl]
¡û
>C171032466
CP014596
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
658230
658316
+
Leu
GAG
-
¡û
>C171035457
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
597092
597006
-
Leu
GAG
-
¡û
>WENV180232762
OBCP01000006
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
192039
192125
+
Leu
GAG
[ENA]
¢þ
>WENV180639614
OCRL01000041
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
192039
192125
+
Leu
GAG
[ENA]
¢þ
>W141064406
APVH01000038
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
268555
268469
-
Leu
GAG
[ENA]
¡û
>WENV181162529
OEIO01000315
[OEIO] marine metagenome; sea ice
6503
6589
+
Leu
GAG
[ENA]
¢þ
>WENV183623737
OOGA01057830
[OOGA] marine metagenome; sea ice
196
282
+
Leu
GAG
[ENA]
¢þ
>WENV183687596
ORMF011166823
[ORMF] groundwater metagenome; groundwater
485
399
-
Leu
GAG
[ENA]
¢þ
>WENV183687792
ORMF011191590
[ORMF] groundwater metagenome; groundwater
4534
4448
-
Leu
GAG
[ENA]
¢þ
>WENV183716767
PDWJ01000174
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
36816
36730
-
Leu
GAG
[ENA]
¢þ
>WENV170476973
CEVJ01014039
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1287
1373
+
Leu
GAG
[ENA]
¢þ
>WENV170482674
CEVM01050655
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
413
499
+
Leu
GAG
[ENA]
¢þ
>WENV170528933
CEWJ01087310
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
312
398
+
Leu
GAG
[ENA]
¢þ
>WENV170550950
CXWF01054945
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
23173
23087
-
Leu
GAG
[ENA]
¢þ
>WENV170739249
LULQ01000049
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
34791
34705
-
Leu
GAG
[ENA]
¢þ
>WENV170893136
MDTD01048349
[MDTD] marine metagenome; seawater
5526
5440
-
Leu
GAG
[ENA]
¢þ
>WENV170898564
MDTD01127887
[MDTD] marine metagenome; seawater
32707
32793
+
Leu
GAG
[ENA]
¢þ
>C181054591
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
285166
285080
-
Leu
GAG
-
¡û
>C181060561
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
75666
75752
+
Leu
GAG
-
¡û
>C191127853
CP034588
Alphaproteobacteria
Silicimonas algicola KC90 [CP034588]
1946332
1946418
+
Leu
GAG
-
¡û
>W09104751
AAME01000077
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
3833
3747
-
Leu
GAG
[ENA]
¡û
>W09104768
AAMF01000001
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
172719
172633
-
Leu
GAG
[ENA]
¡û
>W1910212602
FMJB01000055
Alphaproteobacteria
Donghicola eburneus KarMa [FMJB]
10784
10698
-
Leu
GAG
[ENA]
¡û
>W1910442766
FWFM01000019
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
86517
86603
+
Leu
GAG
[ENA]
¡û
>W1911653455
QDFI01000005
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
7288
7374
+
Leu
GAG
[ENA]
¡û
>W1810119941
PHSI01000024
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
39215
39301
+
Leu
GAG
[ENA]
¡û
>W1810476812
QAOH01000008
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
197739
197825
+
Leu
GAG
[ENA]
¡û
>W1810477628
QAOY01000008
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
25710
25624
-
Leu
GAG
[ENA]
¡û
>W1810503963
QBKN01000018
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
36151
36237
+
Leu
GAG
[ENA]
¡û
>W1810594707
QGDJ01000004
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
156794
156880
+
Leu
GAG
[ENA]
¡û
>W1810761102
QPLJ01000008
Alphaproteobacteria
Jannaschia formosa 12N15 [QPLJ]
41087
41173
+
Leu
GAG
[ENA]
¡û
>C121005258
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
1634388
1634302
-
Leu
GAG
[Ensembl]
¡û
>W121076779
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
1501720
1501806
+
Leu
GAG
[ENA]
¡û
>W1710524241
FNIO01000005
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
365282
365368
+
Leu
GAG
[ENA]
¡û
>W1710558250
FOLR01000009
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
85824
85738
-
Leu
GAG
[ENA]
¡û
>W1710566428
FORY01000019
Alphaproteobacteria
Celeribacter halophilus [FORY]
14896
14810
-
Leu
GAG
[ENA]
¡û
>W1710576241
FOZW01000012
Alphaproteobacteria
Alloyangia pacifica [FOZW]
13157
13243
+
Leu
GAG
[ENA]
¡û
>W1710584242
FQVK01000013
Alphaproteobacteria
Ruegeria intermedia [FQVK]
801
715
-
Leu
GAG
[ENA]
¡û
>W1710598814
FTOG01000003
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
244998
244912
-
Leu
GAG
[ENA]
¡û
>W1710599130
FTOM01000002
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
635442
635528
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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