This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98145 (54 seq.)
>W131217882
ATXE01000003
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
332905
332821
-
Leu
TAG
[ENA]
¡û
>C171054415
CP016954
Actinomycetota
Cutibacterium avidum DPC 6544 [CP016954]
2457952
2457868
-
Leu
TAG
-
¡û
>WENV180097807
MTBK01212613
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1417
1500
+
Leu
TAG
[ENA]
¢þ
>W141055823
AOSS01000300
Actinomycetota
Cutibacterium granulosum DSM 20700 [AOSS]
441
357
-
Leu
TAG
[ENA]
¡û
>W141055862
AOST01000041
Actinomycetota
Cutibacterium granulosum TM11 [AOST]
62202
62286
+
Leu
TAG
[ENA]
¡û
>WENV180711870
ODFR01000169
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
9287
9203
-
Leu
TAG
[ENA]
¢þ
>WENV180745654
ODHL01001963
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
1085
1001
-
Leu
TAG
[ENA]
¢þ
>WENV180765640
ODIC01018204
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
341
257
-
Leu
TAG
[ENA]
¢þ
>WENV180855605
ODKY01000095
[ODKY] human metagenome; G_DNA_R_Retroauricular crease
6716
6632
-
Leu
TAG
[ENA]
¢þ
>WENV180857472
ODLB01000431
[ODLB] human metagenome; G_DNA_L_Retroauricular crease
1921
1837
-
Leu
TAG
[ENA]
¢þ
>WENV180878727
ODLX01019534
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
26
110
+
Leu
TAG
[ENA]
¢þ
>WENV181006951
ODWC01000126
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
637
553
-
Leu
TAG
[ENA]
¢þ
>WENV181042331
ODXT01017450
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
174
90
-
Leu
TAG
[ENA]
¢þ
>WENV181123316
OEFP01000009
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
8852
8936
+
Leu
TAG
[ENA]
¢þ
>W141156060
AXMM01000001
Actinomycetota
Propionibacterium sp. KPL1844 [AXMM]
129231
129315
+
Leu
TAG
[ENA]
¡û
>WENV182635895
OJKZ01000006
[OJKZ] metagenome; surface
158908
158824
-
Leu
TAG
[ENA]
¢þ
>WENV182640082
OJLB01000194
[OJLB] metagenome; surface
19265
19181
-
Leu
TAG
[ENA]
¢þ
>WENV182640687
OJLC01012314
[OJLC] metagenome; surface
435
351
-
Leu
TAG
[ENA]
¢þ
>WENV182643038
OJLS01000194
[OJLS] metagenome; surface
7743
7659
-
Leu
TAG
[ENA]
¢þ
>WENV182643605
OJLW01000200
[OJLW] metagenome; surface
24587
24503
-
Leu
TAG
[ENA]
¢þ
>WENV182644609
OJLY01000041
[OJLY] metagenome; surface
99077
98993
-
Leu
TAG
[ENA]
¢þ
>WENV182645780
OJLZ01002461
[OJLZ] metagenome; surface
1507
1591
+
Leu
TAG
[ENA]
¢þ
>WENV182799913
OJTY01000006
[OJTY] human gut metagenome; human gut
4952
5036
+
Leu
TAG
[ENA]
¢þ
>WENV182800749
OJUF01002700
[OJUF] human gut metagenome; human gut
189
105
-
Leu
TAG
[ENA]
¢þ
>WENV182804584
OJUV01003167
[OJUV] human gut metagenome; human gut
299
383
+
Leu
TAG
[ENA]
¢þ
>WENV182807727
OJVY01000513
[OJVY] human gut metagenome; human gut
7457
7373
-
Leu
TAG
[ENA]
¢þ
>WENV182816458
OJZA01001122
[OJZA] human gut metagenome; human gut
3245
3161
-
Leu
TAG
[ENA]
¢þ
>WENV182823237
OKBS01001157
[OKBS] human gut metagenome; human gut
355
271
-
Leu
TAG
[ENA]
¢þ
>WENV182835562
OKFO01000119
[OKFO] human gut metagenome; human gut
7840
7756
-
Leu
TAG
[ENA]
¢þ
>WENV182837437
OKGH01000040
[OKGH] human gut metagenome; human gut
12366
12282
-
Leu
TAG
[ENA]
¢þ
>WENV182845651
OKJE01000350
[OKJE] human gut metagenome; human gut
241
325
+
Leu
TAG
[ENA]
¢þ
>WENV182849715
OKKT01000950
[OKKT] human gut metagenome; human gut
950
866
-
Leu
TAG
[ENA]
¢þ
>WENV182851728
OKLR01000237
[OKLR] human gut metagenome; human gut
7457
7373
-
Leu
TAG
[ENA]
¢þ
>WENV182852271
OKLW01000321
[OKLW] human gut metagenome; human gut
6147
6231
+
Leu
TAG
[ENA]
¢þ
>WENV182852426
OKLY01000016
[OKLY] human gut metagenome; human gut
17154
17238
+
Leu
TAG
[ENA]
¢þ
>WENV182858407
OKOE01000007
[OKOE] human gut metagenome; human gut
10298
10214
-
Leu
TAG
[ENA]
¢þ
>WENV182858692
OKOG01000003
[OKOG] human gut metagenome; human gut
128805
128889
+
Leu
TAG
[ENA]
¢þ
>WENV182859027
OKOK01000552
[OKOK] human gut metagenome; human gut
455
371
-
Leu
TAG
[ENA]
¢þ
>WENV182863257
OKPS01000025
[OKPS] human gut metagenome; human gut
8718
8634
-
Leu
TAG
[ENA]
¢þ
>WENV183238423
OLQY01047636
[OLQY] human gut metagenome; faeces
188
105
-
Leu
TAG
[ENA]
¢þ
>C181218266
LT576032
Actinomycetota
Propionibacterium freudenreichii [LT576032]
1671403
1671486
+
Leu
TAG
-
¡û
>C181218598
LT593929
Actinomycetota
Propionibacterium freudenreichii [LT593929]
1656558
1656641
+
Leu
TAG
-
¡û
>C181219223
LT618779
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
1695567
1695650
+
Leu
TAG
-
¡û
>C181219267
LT618780
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
1678847
1678930
+
Leu
TAG
-
¡û
>C181219664
LT618790
Actinomycetota
Propionibacterium freudenreichii [LT618789, LT618790]
1785635
1785718
+
Leu
TAG
-
¡û
>C181219797
LT618793
Actinomycetota
Propionibacterium freudenreichii [LT618793, LT618794]
1685543
1685626
+
Leu
TAG
-
¡û
>C181224536
LT906441
Actinomycetota
Cutibacterium granulosum NCTC11865 [LT906441]
1917429
1917513
+
Leu
TAG
-
¡û
>W1911615608
PPCV01000006
Actinomycetota
Propioniciclava flava VG341 [PPCV]
73425
73342
-
Leu
TAG
[ENA]
¡û
>W1510063317
CDAC01000053
Actinomycetota
Propionibacterium freudenreichii CIRM-BIA 527 [CDAC]
128375
128291
-
Leu
TAG
[ENA]
¡û
>W1610521552
JNBU01000001
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
561297
561213
-
Leu
TAG
[ENA]
¡û
>W1610521609
JNBU01000133
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
441
357
-
Leu
TAG
[ENA]
¡û
>W1710552646
FOGZ01000003
Actinomycetota
Propionibacterium cyclohexanicum [FOGZ]
18158
18240
+
Leu
TAG
[ENA]
¡û
>W1710620837
JNBU01000001
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
561297
561213
-
Leu
TAG
[ENA]
¡û
>W1710620894
JNBU01000133
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
441
357
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK