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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98147 (139 seq.)
>W131086927
AOCB01000001
Bacillota
Streptococcus mutans ATCC 25175 [AOCB]
22297
22380
+
Leu
TAG
[ENA]
¡û
>W131086974
AOCB01000009
Bacillota
Streptococcus mutans ATCC 25175 [AOCB]
253151
253068
-
Leu
TAG
[ENA]
¡û
>W131086980
AOCB01000009
Bacillota
Streptococcus mutans ATCC 25175 [AOCB]
224835
224752
-
Leu
TAG
[ENA]
¡û
>W1711094200
LTFS01000153
Bacillota
Globicatella sp. HMSC072A10 [LTFS]
449
366
-
Leu
TAG
[ENA]
¡û
>W131160669
AQWT01000002
Bacillota
Streptococcus mutans DSM 20523 [AQWT]
345817
345734
-
Leu
TAG
[ENA]
¡û
>W131182415
ARQJ01000002
Bacillota
Salinicoccus albus DSM 19776 [ARQJ]
803
887
+
Leu
TAG
[ENA]
¡û
>W131027766
AJAQ01000010
Bacillota
Enterococcus pallens ATCC BAA-351 [AJAQ]
5236
5318
+
Leu
TAG
[ENA]
¡û
>W131027774
AJAQ01000012
Bacillota
Enterococcus pallens ATCC BAA-351 [AJAQ]
3407
3489
+
Leu
TAG
[ENA]
¡û
>W131053926
ANAM01000008
Bacillota
Salinicoccus carnicancri Crm [ANAM]
396621
396537
-
Leu
TAG
[ENA]
¡û
>W141007918
AGZE01000021
Bacillota
Falseniella ignava CCUG 37419 [AGZE]
30385
30304
-
Leu
TAG
[ENA]
¡û
>W141010470
AHRO01000091
Bacillota
Streptococcus mutans 11A1 [AHRO]
238
321
+
Leu
TAG
[ENA]
¡û
>W141010655
AHRU01000083
Bacillota
Streptococcus mutans 5SM3 [AHRU]
233
150
-
Leu
TAG
[ENA]
¡û
>W141010759
AHRY01000069
Bacillota
Streptococcus mutans N29 [AHRY]
233
150
-
Leu
TAG
[ENA]
¡û
>W141010958
AHSF01000090
Bacillota
Streptococcus mutans N34 [AHSF]
153
70
-
Leu
TAG
[ENA]
¡û
>W141011020
AHSH01000109
Bacillota
Streptococcus mutans NLML4 [AHSH]
233
150
-
Leu
TAG
[ENA]
¡û
>W141011376
AHSU01000128
Bacillota
Streptococcus mutans U2A [AHSU]
233
150
-
Leu
TAG
[ENA]
¡û
>W141011431
AHSW01000092
Bacillota
Streptococcus mutans NLML1 [AHSW]
240
323
+
Leu
TAG
[ENA]
¡û
>W141011488
AHSY01000093
Bacillota
Streptococcus mutans 14D [AHSY]
233
150
-
Leu
TAG
[ENA]
¡û
>W141011598
AHTC01000100
Bacillota
Streptococcus mutans SM4 [AHTC]
240
323
+
Leu
TAG
[ENA]
¡û
>W141040440
ALYX01000012
Bacillota
Streptococcus mutans B112SM-A [ALYX]
11907
11824
-
Leu
TAG
[ENA]
¡û
>W141040451
ALYX01000022
Bacillota
Streptococcus mutans B112SM-A [ALYX]
305336
305253
-
Leu
TAG
[ENA]
¡û
>W141040476
ALYX01000038
Bacillota
Streptococcus mutans B112SM-A [ALYX]
5557
5640
+
Leu
TAG
[ENA]
¡û
>W141040560
ALYZ01000039
Bacillota
Streptococcus mutans B082SM-A [ALYZ]
5555
5638
+
Leu
TAG
[ENA]
¡û
>W141040570
ALYZ01000040
Bacillota
Streptococcus mutans B082SM-A [ALYZ]
5555
5638
+
Leu
TAG
[ENA]
¡û
>W141040589
ALYZ01000043
Bacillota
Streptococcus mutans B082SM-A [ALYZ]
27379
27296
-
Leu
TAG
[ENA]
¡û
>WENV181354675
OFMS01048701
[OFMS] human gut metagenome; human gut
203
284
+
Leu
TAG
[ENA]
¢þ
>WENV182104958
OHIB01022841
[OHIB] human gut metagenome; feces
19
103
+
Leu
TAG
[ENA]
¢þ
>W141245670
CALL01000007
Bacillota
Lactococcus raffinolactis 4877 [CALL]
644
725
+
Leu
TAG
[ENA]
¡û
>WENV182635996
OJKZ01000085
[OJKZ] metagenome; surface
729
810
+
Leu
TAG
[ENA]
¢þ
>WENV182644367
OJLW01027485
[OJLW] metagenome; surface
605
524
-
Leu
TAG
[ENA]
¢þ
>WENV182645480
OJLY01028757
[OJLY] metagenome; surface
572
491
-
Leu
TAG
[ENA]
¢þ
>WENV182645945
OJLZ01012948
[OJLZ] metagenome; surface
66
147
+
Leu
TAG
[ENA]
¢þ
>WENV182672104
OJNM01306782
[OJNM] metagenome; surface
413
332
-
Leu
TAG
[ENA]
¢þ
>WENV182803484
OJUL01001106
[OJUL] human gut metagenome; human gut
4081
3998
-
Leu
TAG
[ENA]
¢þ
>WENV182827035
OKCW01005106
[OKCW] human gut metagenome; human gut
644
561
-
Leu
TAG
[ENA]
¢þ
>WENV182850258
OKKY01001542
[OKKY] human gut metagenome; human gut
822
905
+
Leu
TAG
[ENA]
¢þ
>WENV182864229
OKQB01000333
[OKQB] human gut metagenome; human gut
1372
1455
+
Leu
TAG
[ENA]
¢þ
>WENV182891443
OKSH01001151
[OKSH] human gut metagenome; faeces
15721
15804
+
Leu
TAG
[ENA]
¢þ
>WENV182952813
OKVX01000041
[OKVX] human gut metagenome; human gut
707
790
+
Leu
TAG
[ENA]
¢þ
>WENV183238698
OLQZ01008012
[OLQZ] human gut metagenome; faeces
254
337
+
Leu
TAG
[ENA]
¢þ
>WENV183293778
OLSK01001794
[OLSK] human gut metagenome; faeces
9895
9812
-
Leu
TAG
[ENA]
¢þ
>WENV170700194
LIDZ01007082
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
498
581
+
Leu
TAG
[ENA]
¢þ
>C181030420
CP018061
Bacillota
Enterococcus mundtii DSM 4838 [CP018061]
3036696
3036612
-
Leu
TAG
-
¡û
>C181030429
CP018061
Bacillota
Enterococcus mundtii DSM 4838 [CP018061]
2816620
2816536
-
Leu
TAG
-
¡û
>C181044070
CP020357
Bacillota
Oceanobacillus iheyensis CHQ24 [CP020357]
527600
527683
+
Leu
TAG
-
¡û
>C181047366
CP020916
Bacillota
Salinicoccus sp. BAB 3246 BAB3246 [CP020916]
489443
489362
-
Leu
TAG
-
¡û
>C181047371
CP020916
Bacillota
Salinicoccus sp. BAB 3246 BAB3246 [CP020916]
488971
488890
-
Leu
TAG
-
¡û
>C181062233
CP022340
Bacillota
Enterococcus mundtii EMB156 [CP022340]
2990145
2990061
-
Leu
TAG
-
¡û
>C181062242
CP022340
Bacillota
Enterococcus mundtii EMB156 [CP022340]
2778667
2778583
-
Leu
TAG
-
¡û
>C181083360
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
1423624
1423542
-
Leu
TAG
-
¡û
>C181083369
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
1113804
1113722
-
Leu
TAG
-
¡û
>C181090618
CP023799
Bacillota
Enterococcus faecium Efaecium_ER04526.5A [CP023799]
2844148
2844065
-
Leu
TAG
-
¡û
>C181090628
CP023799
Bacillota
Enterococcus faecium Efaecium_ER04526.5A [CP023799]
2568413
2568330
-
Leu
TAG
-
¡û
>C181112612
CP025077
Bacillota
Enterococcus faecium LS170308 [CP025077]
40551
40634
+
Leu
TAG
-
¡û
>C181112622
CP025077
Bacillota
Enterococcus faecium LS170308 [CP025077]
206100
206183
+
Leu
TAG
-
¡û
>C181188219
CP030110
Bacillota
Enterococcus faecium BM4105-RF [CP030110]
2657693
2657610
-
Leu
TAG
-
¡û
>C181188229
CP030110
Bacillota
Enterococcus faecium BM4105-RF [CP030110]
2438225
2438142
-
Leu
TAG
-
¡û
>C191098494
CP033041
Bacillota
Enterococcus faecium JE1 [CP033041]
2700660
2700577
-
Leu
TAG
-
¡û
>C191098504
CP033041
Bacillota
Enterococcus faecium JE1 [CP033041]
2496160
2496076
-
Leu
TAG
-
¡û
>C191105263
CP033376
Bacillota
Enterococcus faecium Gr17 [CP033376]
1656997
1656914
-
Leu
TAG
-
¡û
>C191105273
CP033376
Bacillota
Enterococcus faecium Gr17 [CP033376]
1485042
1484959
-
Leu
TAG
-
¡û
>C191176770
CP040368
Bacillota
Enterococcus faecium VB3240 [CP040368]
2782464
2782381
-
Leu
TAG
-
¡û
>C191176780
CP040368
Bacillota
Enterococcus faecium VB3240 [CP040368]
2586785
2586702
-
Leu
TAG
-
¡û
>C191215098
LR135181
Bacillota
Enterococcus faecium [LR135181]
2654654
2654571
-
Leu
TAG
-
¡û
>C191215108
LR135181
Bacillota
Enterococcus faecium [LR135181]
2449377
2449294
-
Leu
TAG
-
¡û
>W141712506
JMRL01000001
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
816
897
+
Leu
TAG
[ENA]
¡û
>W141712544
JMRL01000030
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JMRL]
13720
13801
+
Leu
TAG
[ENA]
¡û
>W1910038569
BEHC01000033
Bacillota
Enterococcus sp. H57 [BEHC]
443
360
-
Leu
TAG
[ENA]
¡û
>W1910228782
FNVY01000003
Bacillota
Enterococcus timonensis Marseille-P2817 [FNVY]
248386
248469
+
Leu
TAG
[ENA]
¡û
>W1910283328
FRDY01000009
Bacillota
Enterococcus faecium [FRDY]
112183
112100
-
Leu
TAG
[ENA]
¡û
>W1910283341
FRDY01000031
Bacillota
Enterococcus faecium [FRDY]
1300
1216
-
Leu
TAG
[ENA]
¡û
>W1910283357
FRDY01000032
Bacillota
Enterococcus faecium [FRDY]
295
379
+
Leu
TAG
[ENA]
¡û
>W1910312785
FRYB01000036
Bacillota
Enterococcus faecium [FRYB]
19955
19872
-
Leu
TAG
[ENA]
¡û
>W1910312825
FRYB01000042
Bacillota
Enterococcus faecium [FRYB]
11487
11404
-
Leu
TAG
[ENA]
¡û
>W1910472080
FXEI01000016
Bacillota
Enterococcus faecium VREN2832 [FXEI]
55778
55695
-
Leu
TAG
[ENA]
¡û
>W1910472330
FXEM01000017
Bacillota
Enterococcus faecium VREN2302 [FXEM]
3568
3651
+
Leu
TAG
[ENA]
¡û
>W1910473524
FXFF01000115
Bacillota
Enterococcus faecium VREN2164 [FXFF]
443
360
-
Leu
TAG
[ENA]
¡û
>W1910474472
FXFV01000017
Bacillota
Enterococcus faecium VREN1900 [FXFV]
53152
53069
-
Leu
TAG
[ENA]
¡û
>W1910474839
FXGB01000014
Bacillota
Enterococcus faecium VREN1840 [FXGB]
53152
53069
-
Leu
TAG
[ENA]
¡û
>W1910474955
FXGD01000005
Bacillota
Enterococcus faecium VREN1903 [FXGD]
53093
53010
-
Leu
TAG
[ENA]
¡û
>W1910474982
FXGD01000079
Bacillota
Enterococcus faecium VREN1903 [FXGD]
9851
9768
-
Leu
TAG
[ENA]
¡û
>W1910476377
FXGZ01000182
Bacillota
Enterococcus faecium VREN1743 [FXGZ]
443
360
-
Leu
TAG
[ENA]
¡û
>W1910476476
FXHB01000049
Bacillota
Enterococcus faecium VREN3287 [FXHB]
10529
10446
-
Leu
TAG
[ENA]
¡û
>W1910476512
FXHC01000001
Bacillota
Enterococcus faecium VREN3642 [FXHC]
192064
192147
+
Leu
TAG
[ENA]
¡û
>W1910477111
FXHL01000185
Bacillota
Enterococcus faecium VREN1629 [FXHL]
276
359
+
Leu
TAG
[ENA]
¡û
>W1910477908
FXHY01000186
Bacillota
Enterococcus faecium VREN1597 [FXHY]
443
360
-
Leu
TAG
[ENA]
¡û
>W1910478031
FXIA01000181
Bacillota
Enterococcus faecium VREN1373 [FXIA]
300
383
+
Leu
TAG
[ENA]
¡û
>W1910480111
FXJI01000191
Bacillota
Enterococcus faecium VREN1834 [FXJI]
443
360
-
Leu
TAG
[ENA]
¡û
>W1910481494
FXKF01000071
Bacillota
Enterococcus faecium VREN3657 [FXKF]
343
426
+
Leu
TAG
[ENA]
¡û
>W1910583192
JXJT01000060
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [JXJT]
178
259
+
Leu
TAG
[ENA]
¡û
>W1910583564
JXKI01000066
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [JXKI]
117
200
+
Leu
TAG
[ENA]
¡û
>W1910607681
LEQK01000016
Bacillota
Enterococcus faecium 147EA1 [LEQK]
1043
960
-
Leu
TAG
[ENA]
¡û
>W1910607694
LEQK01000019
Bacillota
Enterococcus faecium 147EA1 [LEQK]
8352
8269
-
Leu
TAG
[ENA]
¡û
>W1910608912
LERH01000016
Bacillota
Enterococcus faecium 311EA1 [LERH]
16719
16636
-
Leu
TAG
[ENA]
¡û
>W1910899960
NGKC01000007
Bacillota
Vagococcus acidifermentans LMG 24798 [NGKC]
152769
152685
-
Leu
TAG
[ENA]
¡û
>W1910995415
NKYP01000050
Bacillota
Enterococcus faecium ICBEf1B [NKYP]
384
301
-
Leu
TAG
[ENA]
¡û
>W1911148592
NPEZ01000001
Bacillota
Salinicoccus roseus BU-1 [NPEZ]
418
499
+
Leu
TAG
[ENA]
¡û
>W1911215906
NROR01000026
Bacillota
Carnobacterium divergens C18 [NROR]
66542
66458
-
Leu
TAG
[ENA]
¡û
>W1911436620
NXOY01000072
Bacillota
Enterococcus faecium 1_Efcm_CA-NL [NXOY]
188
271
+
Leu
TAG
[ENA]
¡û
>W1911536312
OMMC01000011
Bacillota
Enterococcus faecium [OMMC]
66722
66639
-
Leu
TAG
[ENA]
¡û
>W1911537548
OMMZ01000031
Bacillota
Enterococcus faecium [OMMZ]
28773
28690
-
Leu
TAG
[ENA]
¡û
>W1911537809
OMND01000125
Bacillota
Enterococcus faecium [OMND]
2281
2198
-
Leu
TAG
[ENA]
¡û
>W1911581370
PGCR01000027
Bacillota
Enterococcus faecium A209R1B0C1 [PGCR]
296
379
+
Leu
TAG
[ENA]
¡û
>W1911588138
PJVK01000046
Bacillota
Enterococcus faecium EN639 [PJVK]
18381
18298
-
Leu
TAG
[ENA]
¡û
>W1911589190
PJWD01000044
Bacillota
Enterococcus faecium EN188 [PJWD]
16701
16618
-
Leu
TAG
[ENA]
¡û
>W1911704438
QOJV01000113
Bacillota
Enterococcus faecium IHC33 [QOJV]
187
270
+
Leu
TAG
[ENA]
¡û
>W1911713603
QPUP01000055
Bacillota
Enterococcus faecium TV71 [QPUP]
13122
13039
-
Leu
TAG
[ENA]
¡û
>W1911716760
QPYT01000014
Bacillota
Enterococcus faecium 12-7VP [QPYT]
52225
52142
-
Leu
TAG
[ENA]
¡û
>W1911752728
QWLU01000017
Bacillota
Oceanobacillus picturae DMTMMB24 [QWLU]
62379
62462
+
Leu
TAG
[ENA]
¡û
>W1810186759
PKHE01000004
Bacillota
Falseniella ignava UMB0898 [PKHE]
90546
90465
-
Leu
TAG
[ENA]
¡û
>W1810273915
PSQK01000037
Bacillota
Enterococcus hirae UPM01 [PSQK]
318
401
+
Leu
TAG
[ENA]
¡û
>W1810273975
PSQL01000033
Bacillota
Enterococcus hirae UPM02 [PSQL]
318
401
+
Leu
TAG
[ENA]
¡û
>W1810310865
PTUD01000058
Bacillota
Enterococcus faecium CVM N60123F [PTUD]
187
270
+
Leu
TAG
[ENA]
¡û
>W1810312785
PTVM01000122
Bacillota
Enterococcus faecium CVM N60449F [PTVM]
188
271
+
Leu
TAG
[ENA]
¡û
>W1810313727
PTWE01000054
Bacillota
Enterococcus faecium CVM N59589F [PTWE]
443
360
-
Leu
TAG
[ENA]
¡û
>W1810317361
PTYX01000126
Bacillota
Enterococcus faecium CVM N53655 [PTYX]
443
360
-
Leu
TAG
[ENA]
¡û
>W1810320117
PUAW01000136
Bacillota
Enterococcus faecium CVM N55337 [PUAW]
443
360
-
Leu
TAG
[ENA]
¡û
>W1810320680
PUBG01000142
Bacillota
Enterococcus faecium CVM N52690 [PUBG]
442
359
-
Leu
TAG
[ENA]
¡û
>W1810320960
PUBL01000188
Bacillota
Enterococcus faecium CVM N52643 [PUBL]
188
271
+
Leu
TAG
[ENA]
¡û
>W1810401107
PYGR01000024
Bacillota
Enterococcus mundtii H18-EM [PYGR]
37392
37308
-
Leu
TAG
[ENA]
¡û
>C151015981
CP007016
Bacillota
Streptococcus mutans UA159-FR [CP007016]
22185
22268
+
Leu
TAG
[Ensembl]
¡û
>C151016023
CP007016
Bacillota
Streptococcus mutans UA159-FR [CP007016]
1683377
1683294
-
Leu
TAG
[Ensembl]
¡û
>C151016029
CP007016
Bacillota
Streptococcus mutans UA159-FR [CP007016]
1655075
1654992
-
Leu
TAG
[Ensembl]
¡û
>W1511477656
JWGO01000013
Bacillota
Streptococcus mutans 1006_SMUT [JWGO]
273
356
+
Leu
TAG
[ENA]
¡û
>W1511477792
JWGS01000042
Bacillota
Streptococcus mutans 1002_SMUT [JWGS]
5555
5638
+
Leu
TAG
[ENA]
¡û
>W1511586060
LAYZ01000001
Bacillota
Salinicoccus sediminis SV-16 [LAYZ]
706435
706351
-
Leu
TAG
[ENA]
¡û
>C161023330
CP010064
Bacillota
Enterococcus cecorum SA3 [CP010064]
1394620
1394703
+
Leu
TAG
-
¡û
>C161033491
CP011281
Bacillota
Enterococcus faecium E39 [CP011281]
2766587
2766504
-
Leu
TAG
-
¡û
>C161033501
CP011281
Bacillota
Enterococcus faecium E39 [CP011281]
2493709
2493626
-
Leu
TAG
-
¡û
>C161057757
CP013614
Bacillota
Enterococcus silesiacus LMG 23085 [CP013614]
3037323
3037406
+
Leu
TAG
-
¡û
>W1610057480
BBXV01000021
Bacillota
Oceanobacillus picturae [BBXV]
874
791
-
Leu
TAG
[ENA]
¡û
>W1610067927
BCQX01000235
Bacillota
Globicatella sanguinis NBRC 15551 [BCQX]
696
613
-
Leu
TAG
[ENA]
¡û
>W1610072965
BCVM01000039
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
689
608
-
Leu
TAG
[ENA]
¡û
>W1610514193
FLZT01000005
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
543433
543352
-
Leu
TAG
[ENA]
¡û
>W1610514206
FLZT01000005
Bacillota
Lactococcus piscium CNCM I-4031 [FLZT]
7189
7108
-
Leu
TAG
[ENA]
¡û
>W1710054179
BBXV01000021
Bacillota
Oceanobacillus picturae [BBXV]
874
791
-
Leu
TAG
[ENA]
¡û
>W1710065300
BCQX01000235
Bacillota
Globicatella sanguinis NBRC 15551 [BCQX]
696
613
-
Leu
TAG
[ENA]
¡û
>W1710070083
BCVM01000039
Bacillota
Lactococcus plantarum NBRC 100936 [BCVM]
689
608
-
Leu
TAG
[ENA]
¡û
>W1710582088
FPKS01000025
Bacillota
Lactococcus chungangensis CAU 28 = DSM 22330 [FPKS]
8906
8825
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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