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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98231 (138 seq.)
>W1710923590
LOBS01000029
Bacillota
Streptococcus gordonii [LOBS]
358
441
+
Leu
CAA
[ENA]
¡û
>W1711010213
LQRC01000245
Bacillota
Streptococcus gordonii [LQRC]
4129
4046
-
Leu
CAA
[ENA]
¡û
>W1711306085
MAND01000024
Bacillota
Streptococcus agalactiae [MAND]
86
3
-
Leu
CAA
[ENA]
¡û
>W1711316090
MAWI01000018
Bacillota
Streptococcus agalactiae [MAWI]
86
3
-
Leu
CAA
[ENA]
¡û
>W1711316200
MAWK01000027
Bacillota
Streptococcus agalactiae [MAWK]
86
3
-
Leu
CAA
[ENA]
¡û
>W1711328126
MBLA01000039
Bacillota
Streptococcus agalactiae [MBLA]
1028
1111
+
Leu
CAA
[ENA]
¡û
>W1711349376
MCQJ01000010
Bacillota
Streptococcus agalactiae serogroup III [MCQJ]
89563
89480
-
Leu
CAA
[ENA]
¡û
>W1711349397
MCQJ01000021
Bacillota
Streptococcus agalactiae serogroup III [MCQJ]
26435
26352
-
Leu
CAA
[ENA]
¡û
>W1711349531
MCQM01000010
Bacillota
Streptococcus agalactiae serogroup III [MCQM]
89636
89553
-
Leu
CAA
[ENA]
¡û
>W1711350613
MCRO01000010
Bacillota
Streptococcus dysgalactiae subsp. equisimilis [MCRO]
1677
1760
+
Leu
CAA
[ENA]
¡û
>W131056815
ANDP01000012
Bacillota
Streptococcus agalactiae CCUG 49072 [ANDP]
437
520
+
Leu
CAA
[ENA]
¡û
>W131057078
ANDX01000018
Bacillota
Streptococcus agalactiae BSU252 [ANDX]
67917
67834
-
Leu
CAA
[ENA]
¡û
>W131057170
ANEA01000044
Bacillota
Streptococcus agalactiae BSU447 [ANEA]
767
850
+
Leu
CAA
[ENA]
¡û
>W131067378
ANPX01000061
Bacillota
Streptococcus agalactiae FSL S3-654 [ANPX]
2849
2766
-
Leu
CAA
[ENA]
¡û
>W131068065
ANQR01000029
Bacillota
Streptococcus agalactiae GB00963 [ANQR]
452
535
+
Leu
CAA
[ENA]
¡û
>W131213114
ATOS01000017
Bacillota
Streptococcus agalactiae MC628 [ATOS]
292
375
+
Leu
CAA
[ENA]
¡û
>W131213119
ATOS01000031
Bacillota
Streptococcus agalactiae MC628 [ATOS]
12432
12349
-
Leu
CAA
[ENA]
¡û
>W131213355
ATOZ01000028
Bacillota
Streptococcus agalactiae GBS12 [ATOZ]
10488
10405
-
Leu
CAA
[ENA]
¡û
>W131248788
CATH01000017
Bacillota
Streptococcus agalactiae LADL_05-108a [CATH]
30
113
+
Leu
CAA
[ENA]
¡û
>W1711462557
MJHU01000011
Bacillota
Streptococcus agalactiae [MJHU]
25777
25694
-
Leu
CAA
[ENA]
¡û
>W1711462592
MJHU01000031
Bacillota
Streptococcus agalactiae [MJHU]
316
399
+
Leu
CAA
[ENA]
¡û
>W1711462623
MJHV01000010
Bacillota
Streptococcus agalactiae [MJHV]
25785
25702
-
Leu
CAA
[ENA]
¡û
>W1711462646
MJHV01000025
Bacillota
Streptococcus agalactiae [MJHV]
428
345
-
Leu
CAA
[ENA]
¡û
>C171070410
CP017952
Bacillota
Streptococcus iniae 89353 [CP017952]
94416
94499
+
Leu
CAA
-
¡û
>w008676
AAJP01000182
Bacillota
Streptococcus agalactiae 515 [AAJP]
539
453
-
Leu
CAA
[ENA]
¡û
>w008645
AAJP01000082
Bacillota
Streptococcus agalactiae 515 [AAJP]
6041
5955
-
Leu
CAA
[ENA]
¡û
>w008635
AAJP01000070
Bacillota
Streptococcus agalactiae 515 [AAJP]
1834
1920
+
Leu
CAA
[ENA]
¡û
>w008418
AAJO01000049
Bacillota
Streptococcus agalactiae 18RS21 [AAJO]
1930
2016
+
Leu
CAA
[ENA]
¡û
>w008409
AAJO01000035
Bacillota
Streptococcus agalactiae 18RS21 [AAJO]
14067
13981
-
Leu
CAA
[ENA]
¡û
>W141008882
AHAA01000007
Bacillota
Streptococcus urinalis FB127-CNA-2 [AHAA]
886
971
+
Leu
CAA
[ENA]
¡û
>W141039376
ALXB01000059
Bacillota
Streptococcus agalactiae STIR-CD-17 [ALXB]
5654
5571
-
Leu
CAA
[ENA]
¡û
>WENV180639919
OCRL01000241
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
65
148
+
Leu
CAA
[ENA]
¢þ
>WENV180640111
OCRL01000551
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
12455
12372
-
Leu
CAA
[ENA]
¢þ
>WENV180781483
ODIP01000236
[ODIP] human metagenome; G_DNA_Supragingival plaque
65
148
+
Leu
CAA
[ENA]
¢þ
>WENV180833101
ODKC01013440
[ODKC] human metagenome; G_DNA_Supragingival plaque
65
148
+
Leu
CAA
[ENA]
¢þ
>W141089164
AUVU01000014
Bacillota
Streptococcus agalactiae SGBS005 [AUVU]
90951
90868
-
Leu
CAA
[ENA]
¡û
>W141089600
AUWG01000014
Bacillota
Streptococcus agalactiae SGBS027 [AUWG]
91443
91360
-
Leu
CAA
[ENA]
¡û
>W141089621
AUWG01000019
Bacillota
Streptococcus agalactiae SGBS027 [AUWG]
433
516
+
Leu
CAA
[ENA]
¡û
>WENV180981689
ODVE01043517
[ODVE] human metagenome; G_DNA_Supragingival plaque
403
486
+
Leu
CAA
[ENA]
¢þ
>WENV181049783
ODYD01002130
[ODYD] human metagenome; G_DNA_Supragingival plaque
7787
7704
-
Leu
CAA
[ENA]
¢þ
>WENV182629251
OJKR01058932
[OJKR] metagenome; surface
102
19
-
Leu
CAA
[ENA]
¢þ
>C181039662
CP019808
Bacillota
Streptococcus agalactiae SA75 [CP019808]
22223
22306
+
Leu
CAA
-
¡û
>C181039693
CP019808
Bacillota
Streptococcus agalactiae SA75 [CP019808]
323276
323359
+
Leu
CAA
-
¡û
>C181040413
CP019820
Bacillota
Streptococcus agalactiae SA195 [CP019820]
22223
22306
+
Leu
CAA
-
¡û
>C181040444
CP019820
Bacillota
Streptococcus agalactiae SA195 [CP019820]
322304
322387
+
Leu
CAA
-
¡û
>C181041035
CP019830
Bacillota
Streptococcus agalactiae SA333 [CP019830]
22228
22311
+
Leu
CAA
-
¡û
>C181041066
CP019830
Bacillota
Streptococcus agalactiae SA333 [CP019830]
322355
322438
+
Leu
CAA
-
¡û
>C181041221
CP019833
Bacillota
Streptococcus agalactiae SA346 [CP019833]
22225
22308
+
Leu
CAA
-
¡û
>C181041252
CP019833
Bacillota
Streptococcus agalactiae SA346 [CP019833]
322332
322415
+
Leu
CAA
-
¡û
>C181106408
CP024843
Bacillota
Streptococcus iniae FP5228 [CP024843]
665535
665618
+
Leu
CAA
-
¡û
>C181116980
CP025420
Bacillota
Streptococcus parauberis SPOF3K [CP025420]
2041450
2041365
-
Leu
CAA
-
¡û
>C181193367
CP030845
Bacillota
Streptococcus agalactiae S73 [CP030845]
74941
75024
+
Leu
CAA
-
¡û
>C181210865
LS483397
Bacillota
Streptococcus uberis NCTC3858 [LS483397]
95268
95353
+
Leu
CAA
-
¡û
>C191112228
CP033808
Bacillota
Streptococcus sp. FDAARGOS_522 [CP033808]
1448863
1448780
-
Leu
CAA
-
¡û
>C191112244
CP033808
Bacillota
Streptococcus sp. FDAARGOS_522 [CP033808]
1279509
1279426
-
Leu
CAA
-
¡û
>C191223164
LR594045
Bacillota
Streptococcus dysgalactiae subsp. equisimilis NCTC9413 [LR594045]
73742
73825
+
Leu
CAA
-
¡û
>W1910201631
FJPY01000095
Bacillota
Streptococcus agalactiae [FJPY]
179
96
-
Leu
CAA
[ENA]
¡û
>W1910617339
LHYZ01000032
Bacillota
Streptococcus agalactiae H008P0 [LHYZ]
340
423
+
Leu
CAA
[ENA]
¡û
>C09110417
AM946015
Bacillota
Streptococcus uberis 0140J [AM946015]
94344
94429
+
Leu
CAA
[Ensembl]
¡û
>W1910812926
MVFI01000002
Bacillota
Streptococcus agalactiae S13-156 [MVFI]
1150
1233
+
Leu
CAA
[ENA]
¡û
>W1910812930
MVFI01000005
Bacillota
Streptococcus agalactiae S13-156 [MVFI]
90
173
+
Leu
CAA
[ENA]
¡û
>W1910812978
MVFJ01000002
Bacillota
Streptococcus agalactiae S11-219 [MVFJ]
763
846
+
Leu
CAA
[ENA]
¡û
>W1910813189
MVFN01000002
Bacillota
Streptococcus agalactiae S15-164 [MVFN]
19
102
+
Leu
CAA
[ENA]
¡û
>W1910813203
MVFN01000005
Bacillota
Streptococcus agalactiae S15-164 [MVFN]
1200
1283
+
Leu
CAA
[ENA]
¡û
>W1910813425
MVFR01000002
Bacillota
Streptococcus agalactiae S89-MA [MVFR]
763
846
+
Leu
CAA
[ENA]
¡û
>W1910813452
MVFR01000050
Bacillota
Streptococcus agalactiae S89-MA [MVFR]
309
226
-
Leu
CAA
[ENA]
¡û
>W1911597686
PNOX01000003
Bacillota
Streptococcus agalactiae sz_20 [PNOX]
91474
91391
-
Leu
CAA
[ENA]
¡û
>W1911597687
PNOX01000004
Bacillota
Streptococcus agalactiae sz_20 [PNOX]
67949
67866
-
Leu
CAA
[ENA]
¡û
>W1911690617
QLPS01000008
Bacillota
Streptococcus iniae QMA0490 [QLPS]
413
496
+
Leu
CAA
[ENA]
¡û
>W1911692032
QLRC01000007
Bacillota
Streptococcus iniae QMA0190 [QLRC]
1035
1118
+
Leu
CAA
[ENA]
¡û
>W1911801211
QYTI01000001
Bacillota
Streptococcus agalactiae ILRI068 [QYTI]
151290
151373
+
Leu
CAA
[ENA]
¡û
>W1911801261
QYTI01000032
Bacillota
Streptococcus agalactiae ILRI068 [QYTI]
79111
79028
-
Leu
CAA
[ENA]
¡û
>W1810364226
PVTA01000006
Bacillota
Streptococcus anginosus OUP19 [PVTA]
380
465
+
Leu
CAA
[ENA]
¡û
>W1810606688
QGRF01000003
Bacillota
Streptococcus agalactiae QMA0487 [QGRF]
114
197
+
Leu
CAA
[ENA]
¡û
>W1810607312
QGRW01000003
Bacillota
Streptococcus agalactiae QMA0290 [QGRW]
390
473
+
Leu
CAA
[ENA]
¡û
>W1810625126
QHHT01000003
Bacillota
Streptococcus agalactiae QMA0494 [QHHT]
1443
1526
+
Leu
CAA
[ENA]
¡û
>W1810828684
QSKN01000005
Bacillota
Streptococcus gordonii AM27-4 [QSKN]
328
411
+
Leu
CAA
[ENA]
¡û
>C151025132
CP007482
Bacillota
Streptococcus agalactiae 138P [CP007482]
23102
23185
+
Leu
CAA
[Ensembl]
¡û
>C151025164
CP007482
Bacillota
Streptococcus agalactiae 138P [CP007482]
247792
247875
+
Leu
CAA
[Ensembl]
¡û
>C151028549
CP007572
Bacillota
Streptococcus agalactiae GBS6 [CP007572]
101945
102028
+
Leu
CAA
[Ensembl]
¡û
>C151028565
CP007572
Bacillota
Streptococcus agalactiae GBS6 [CP007572]
287102
287185
+
Leu
CAA
[Ensembl]
¡û
>C151028638
CP007573
Bacillota
Streptococcus anginosus SA1 [CP007573]
1917852
1917767
-
Leu
CAA
[Ensembl]
¡û
>C151030499
CP007631
Bacillota
Streptococcus agalactiae NGBS061 [CP007631]
97259
97342
+
Leu
CAA
[Ensembl]
¡û
>C151030515
CP007631
Bacillota
Streptococcus agalactiae NGBS061 [CP007631]
256785
256868
+
Leu
CAA
[Ensembl]
¡û
>C151030577
CP007632
Bacillota
Streptococcus agalactiae NGBS572 [CP007632]
97410
97493
+
Leu
CAA
[Ensembl]
¡û
>C151030593
CP007632
Bacillota
Streptococcus agalactiae NGBS572 [CP007632]
262520
262603
+
Leu
CAA
[Ensembl]
¡û
>W1510139362
CGBF01000009
Bacillota
Streptococcus agalactiae IT-NI-007 [CGBF]
83
166
+
Leu
CAA
[ENA]
¡û
>W1510139946
CGBQ01000025
Bacillota
Streptococcus agalactiae RBH03 [CGBQ]
12473
12390
-
Leu
CAA
[ENA]
¡û
>W1510140611
CGCD01000004
Bacillota
Streptococcus agalactiae DK-NI-012 [CGCD]
91353
91270
-
Leu
CAA
[ENA]
¡û
>W1510140638
CGCD01000008
Bacillota
Streptococcus agalactiae DK-NI-012 [CGCD]
352
435
+
Leu
CAA
[ENA]
¡û
>W1510141029
CGCK01000007
Bacillota
Streptococcus agalactiae DK-NI-010 [CGCK]
67690
67607
-
Leu
CAA
[ENA]
¡û
>W1510455805
CPWP01000019
Bacillota
Streptococcus agalactiae DE-NI-042 [CPWP]
24141
24058
-
Leu
CAA
[ENA]
¡û
>W1510460101
CPZR01000009
Bacillota
Streptococcus agalactiae DK-NI-004 [CPZR]
945
1028
+
Leu
CAA
[ENA]
¡û
>W1510463982
CQCI01000006
Bacillota
Streptococcus agalactiae DE-NI-001 [CQCI]
100820
100737
-
Leu
CAA
[ENA]
¡û
>W1510463985
CQCI01000006
Bacillota
Streptococcus agalactiae DE-NI-001 [CQCI]
67624
67541
-
Leu
CAA
[ENA]
¡û
>W1510464967
CQDB01000007
Bacillota
Streptococcus agalactiae B50VD [CQDB]
90
173
+
Leu
CAA
[ENA]
¡û
>W1510464978
CQDB01000008
Bacillota
Streptococcus agalactiae B50VD [CQDB]
67734
67651
-
Leu
CAA
[ENA]
¡û
>W1510772319
JATC01000002
Bacillota
Streptococcus uberis B362 [JATC]
183
268
+
Leu
CAA
[ENA]
¡û
>W1510772521
JATG01000001
Bacillota
Streptococcus uberis C8329 [JATG]
1099
1184
+
Leu
CAA
[ENA]
¡û
>W1511536126
JYOZ01000006
Bacillota
Streptococcus gordonii I141 [JYOZ]
889
972
+
Leu
CAA
[ENA]
¡û
>W1511593336
LBKJ01000079
Bacillota
Streptococcus agalactiae DK-B-USS-196 [LBKJ]
2870
2787
-
Leu
CAA
[ENA]
¡û
>W1511593730
LBKV01000018
Bacillota
Streptococcus agalactiae DK-PW-014 [LBKV]
440
523
+
Leu
CAA
[ENA]
¡û
>W1511594045
LBLE01000025
Bacillota
Streptococcus agalactiae BE-PW-119 [LBLE]
10146
10063
-
Leu
CAA
[ENA]
¡û
>W1511594095
LBLG01000005
Bacillota
Streptococcus agalactiae BE-PW-130 [LBLG]
84998
84915
-
Leu
CAA
[ENA]
¡û
>W1511594115
LBLG01000020
Bacillota
Streptococcus agalactiae BE-PW-130 [LBLG]
336
419
+
Leu
CAA
[ENA]
¡û
>W1511621390
LCUV01000033
Bacillota
Streptococcus agalactiae ES-NI-010 [LCUV]
27797
27714
-
Leu
CAA
[ENA]
¡û
>W1511621396
LCUV01000034
Bacillota
Streptococcus agalactiae ES-NI-010 [LCUV]
362
445
+
Leu
CAA
[ENA]
¡û
>W1511622229
LCVV01000012
Bacillota
Streptococcus agalactiae ES-PW-181 [LCVV]
608
691
+
Leu
CAA
[ENA]
¡û
>W1511623249
LCXA01000007
Bacillota
Streptococcus agalactiae GB-PW-081 [LCXA]
70786
70703
-
Leu
CAA
[ENA]
¡û
>W1511623270
LCXA01000019
Bacillota
Streptococcus agalactiae GB-PW-081 [LCXA]
439
522
+
Leu
CAA
[ENA]
¡û
>W1511623335
LCXC01000023
Bacillota
Streptococcus agalactiae GB-PW-088 [LCXC]
1288
1371
+
Leu
CAA
[ENA]
¡û
>W1511626120
LCZR01000020
Bacillota
Streptococcus agalactiae 418136 [LCZR]
319
402
+
Leu
CAA
[ENA]
¡û
>W1511626133
LCZR01000027
Bacillota
Streptococcus agalactiae 418136 [LCZR]
319
402
+
Leu
CAA
[ENA]
¡û
>W1511626681
LDAI01000005
Bacillota
Streptococcus agalactiae SH1287 [LDAI]
84712
84629
-
Leu
CAA
[ENA]
¡û
>W1511626687
LDAI01000009
Bacillota
Streptococcus agalactiae SH1287 [LDAI]
68048
67965
-
Leu
CAA
[ENA]
¡û
>W11180168
AGHL01000244
Bacillota
Streptococcus sobrinus TCI-396 [AGHL]
14
97
+
Leu
CAA
[ENA]
¡û
>W121114768
ALQD01000011
Bacillota
Streptococcus agalactiae FSL C1-494 [ALQD]
334
417
+
Leu
CAA
[ENA]
¡û
>W121114775
ALQD01000024
Bacillota
Streptococcus agalactiae FSL C1-494 [ALQD]
334
417
+
Leu
CAA
[ENA]
¡û
>W121115292
ALQT01000011
Bacillota
Streptococcus agalactiae CCUG 39096 A [ALQT]
27104
27021
-
Leu
CAA
[ENA]
¡û
>W121116638
ALSH01000097
Bacillota
Streptococcus agalactiae LDS 628 [ALSH]
81
164
+
Leu
CAA
[ENA]
¡û
>W121116656
ALSH01000103
Bacillota
Streptococcus agalactiae LDS 628 [ALSH]
9882
9799
-
Leu
CAA
[ENA]
¡û
>W121117623
ALTH01000030
Bacillota
Streptococcus agalactiae GB00264 [ALTH]
682
765
+
Leu
CAA
[ENA]
¡û
>W121117839
ALTN01000026
Bacillota
Streptococcus agalactiae GB00555 [ALTN]
95839
95756
-
Leu
CAA
[ENA]
¡û
>W121118401
ALUE01000004
Bacillota
Streptococcus agalactiae GB00887 [ALUE]
49796
49713
-
Leu
CAA
[ENA]
¡û
>W121118597
ALUK01000017
Bacillota
Streptococcus agalactiae GB00901 [ALUK]
104
187
+
Leu
CAA
[ENA]
¡û
>W121118605
ALUK01000018
Bacillota
Streptococcus agalactiae GB00901 [ALUK]
91697
91614
-
Leu
CAA
[ENA]
¡û
>W121118783
ALUP01000008
Bacillota
Streptococcus agalactiae GB00922 [ALUP]
509
592
+
Leu
CAA
[ENA]
¡û
>W121119052
ALUW01000033
Bacillota
Streptococcus agalactiae GB00955 [ALUW]
329
412
+
Leu
CAA
[ENA]
¡û
>W1610580508
LBCT01000003
Bacillota
Streptococcus gordonii [LBCT]
130477
130394
-
Leu
CAA
[ENA]
¡û
>W1610618082
LHAD01000006
Bacillota
Streptococcus parauberis [LHAD]
119136
119051
-
Leu
CAA
[ENA]
¡û
>W1610781069
LOBS01000029
Bacillota
Streptococcus gordonii [LOBS]
358
441
+
Leu
CAA
[ENA]
¡û
>W1610858733
LQRC01000245
Bacillota
Streptococcus gordonii [LQRC]
4129
4046
-
Leu
CAA
[ENA]
¡û
>W1611055439
MAND01000024
Bacillota
Streptococcus agalactiae [MAND]
86
3
-
Leu
CAA
[ENA]
¡û
>W1611060248
MAWI01000018
Bacillota
Streptococcus agalactiae [MAWI]
86
3
-
Leu
CAA
[ENA]
¡û
>W1611060358
MAWK01000027
Bacillota
Streptococcus agalactiae [MAWK]
86
3
-
Leu
CAA
[ENA]
¡û
>W1611064264
MBLA01000039
Bacillota
Streptococcus agalactiae [MBLA]
1028
1111
+
Leu
CAA
[ENA]
¡û
>W1710699520
LBCT01000003
Bacillota
Streptococcus gordonii [LBCT]
130477
130394
-
Leu
CAA
[ENA]
¡û
>W1710744257
LHAD01000006
Bacillota
Streptococcus parauberis [LHAD]
119136
119051
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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