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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98340 (8 seq.)
>W131060587
ANHY01000004
Alphaproteobacteria
Caenispirillum salinarum AK4 [ANHY]
113169
113255
+
Leu
CAG
[ENA]
¡û
>WENV170894472
MDTD01066132
[MDTD] marine metagenome; seawater
3398
3312
-
Leu
CAG
[ENA]
¢þ
>C151099573
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3833576
3833662
+
Leu
CAG
[Ensembl]
¡û
>C151099574
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3833710
3833796
+
Leu
CAG
[Ensembl]
¡û
>C151099575
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3833950
3834036
+
Leu
CAG
[Ensembl]
¡û
>C151099576
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3834085
3834171
+
Leu
CAG
[Ensembl]
¡û
>C151099577
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
3834219
3834305
+
Leu
CAG
[Ensembl]
¡û
>W1710514013
FNAP01000006
Alphaproteobacteria
Rhodospira trueperi [FNAP]
195665
195751
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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