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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9848 (97 seq.)
>W1711345214
MCNR01000005
Bacillota
Ligilactobacillus animalis [MCNR]
1502
1591
+
Ser
TGA
[ENA]
¡û
>W1711632519
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
4629
4540
-
Ser
TGA
[ENA]
¡û
>W1711683763
MRYQ01000006
Bacillota
Ligilactobacillus ruminis [MRYQ]
90732
90643
-
Ser
TGA
[ENA]
¡û
>W1711943720
NBED01000012
Bacillota
Ligilactobacillus salivarius [NBED]
1102
1191
+
Ser
TGA
[ENA]
¡û
>W1711944547
NBEV01000014
Bacillota
Ligilactobacillus salivarius [NBEV]
424
335
-
Ser
TGA
[ENA]
¡û
>W1712036012
NFHF01000035
Bacillota
Ligilactobacillus salivarius [NFHF]
821
910
+
Ser
TGA
[ENA]
¡û
>W1712056403
NFZZ01000013
Bacillota
Levilactobacillus brevis [NFZZ]
965
1054
+
Ser
TGA
[ENA]
¡û
>C171037640
CP015338
Bacillota
Levilactobacillus brevis 100D8 [CP015338]
1766010
1766099
+
Ser
TGA
-
¡û
>C171057181
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
71895
71806
-
Ser
TGA
-
¡û
>C171098952
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
1825327
1825238
-
Ser
TGA
-
¡û
>C171098991
CP019728
Bacillota
Jeotgalibaca dankookensis EX-07 [CP019728]
984318
984229
-
Ser
TGA
-
¡û
>C171121200
CP021674
Bacillota
Levilactobacillus brevis SRCM101106 [CP021674]
896972
897061
+
Ser
TGA
-
¡û
>W131104422
APCP01000085
Bacillota
Ligilactobacillus pobuzihii E100301 [APCP]
979
1068
+
Ser
TGA
[ENA]
¡û
>C011331
CP000416
Bacillota
Levilactobacillus brevis ATCC 367 [CP000416]
1142720
1142631
-
Ser
TGA
[Ensembl]
¡û
>WENV181242030
OFFF01024371
[OFFF] mouse gut metagenome; faeces
969
1058
+
Ser
TGA
[ENA]
¢þ
>WENV181255470
OFFS01004161
[OFFS] mouse gut metagenome; faeces
294
383
+
Ser
TGA
[ENA]
¢þ
>WENV181264321
OFGA01000574
[OFGA] mouse gut metagenome; faeces
29480
29391
-
Ser
TGA
[ENA]
¢þ
>WENV181268015
OFGD01000359
[OFGD] mouse gut metagenome; faeces
1417
1506
+
Ser
TGA
[ENA]
¢þ
>WENV181269225
OFGE01000668
[OFGE] mouse gut metagenome; faeces
34998
34909
-
Ser
TGA
[ENA]
¢þ
>WENV181273973
OFGH01024615
[OFGH] mouse gut metagenome; faeces
294
383
+
Ser
TGA
[ENA]
¢þ
>WENV181281395
OFGO01058044
[OFGO] mouse gut metagenome; faeces
337
248
-
Ser
TGA
[ENA]
¢þ
>WENV181287842
OFGX01052146
[OFGX] mouse gut metagenome; faeces
294
383
+
Ser
TGA
[ENA]
¢þ
>WENV181290591
OFHA01073345
[OFHA] mouse gut metagenome; faeces
329
240
-
Ser
TGA
[ENA]
¢þ
>WENV181557500
OGIV01024213
[OGIV] metagenome; Human gut stool
905
994
+
Ser
TGA
[ENA]
¢þ
>WENV181576644
OGJV01045572
[OGJV] metagenome; Human gut stool
233
144
-
Ser
TGA
[ENA]
¢þ
>WENV182009662
OHBJ01030363
[OHBJ] human gut metagenome; faeces
1713
1624
-
Ser
TGA
[ENA]
¢þ
>W141227546
BALC01000001
Bacillota
Liquorilactobacillus sucicola JCM 15457 [BALC]
750
839
+
Ser
TGA
[ENA]
¡û
>W141279965
JAGR01000001
Bacillota
Levilactobacillus brevis AG48 [JAGR]
358047
357958
-
Ser
TGA
[ENA]
¡û
>WENV182927410
OKUM01030207
[OKUM] human gut metagenome; feces
772
861
+
Ser
TGA
[ENA]
¢þ
>WENV183522915
ONZR01010495
[ONZR] human gut metagenome; human gut
188
277
+
Ser
TGA
[ENA]
¢þ
>WENV183767703
PPYE01382532
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
171
82
-
Ser
TGA
[ENA]
¢þ
>C181052530
CP021456
Bacillota
Levilactobacillus brevis ZLB004 [CP021456]
1032567
1032656
+
Ser
TGA
-
¡û
>C181103398
CP024635
Bacillota
Levilactobacillus brevis BDGP6 [CP024635]
737758
737669
-
Ser
TGA
-
¡û
>C191015323
CP018176
Bacillota
Liquorilactobacillus hordei TMW 1.1822 [CP018176]
1649576
1649487
-
Ser
TGA
-
¡û
>W141699175
JMHU01000021
Bacillota
Ligilactobacillus animalis [JMHU]
926
1015
+
Ser
TGA
[ENA]
¡û
>W141818368
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1067782
1067693
-
Ser
TGA
[ENA]
¡û
>W141818376
JQLL01000001
Bacillota
Carnobacterium funditum DSM 5970 [JQLL]
1066946
1066857
-
Ser
TGA
[ENA]
¡û
>W1910067615
BFFP01000012
Bacillota
Ligilactobacillus salitolerans YK43 [BFFP]
54367
54278
-
Ser
TGA
[ENA]
¡û
>W1910611665
LFJM01000018
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
1250
1339
+
Ser
TGA
[ENA]
¡û
>W1910643101
LUGO01000015
Bacillota
Ligilactobacillus agilis UMNLA1 [LUGO]
3593
3504
-
Ser
TGA
[ENA]
¡û
>W1910643120
LUGO01000030
Bacillota
Ligilactobacillus agilis UMNLA1 [LUGO]
100017
99928
-
Ser
TGA
[ENA]
¡û
>W1910643142
LUGO01000039
Bacillota
Ligilactobacillus agilis UMNLA1 [LUGO]
28892
28981
+
Ser
TGA
[ENA]
¡û
>W1910649403
LXYX01000049
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
471
560
+
Ser
TGA
[ENA]
¡û
>W1910649652
LXZB01000075
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
185
96
-
Ser
TGA
[ENA]
¡û
>W1910649719
LXZC01000084
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
476
565
+
Ser
TGA
[ENA]
¡û
>W1910649730
LXZD01000053
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
850
761
-
Ser
TGA
[ENA]
¡û
>W1910649899
LXZH01000036
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
26469
26380
-
Ser
TGA
[ENA]
¡û
>W1910649958
LXZJ01000051
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
472
561
+
Ser
TGA
[ENA]
¡û
>W1910650090
LXZL01000092
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
6688
6599
-
Ser
TGA
[ENA]
¡û
>W1910650115
LXZM01000042
Bacillota
Ligilactobacillus salivarius KLF002 [LXZM]
471
560
+
Ser
TGA
[ENA]
¡û
>W1910650404
LXZS01000028
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
476
565
+
Ser
TGA
[ENA]
¡û
>W1910650504
LXZT01000103
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
183
94
-
Ser
TGA
[ENA]
¡û
>W1910652531
LYQQ01000036
Bacillota
Ligilactobacillus agilis UMNLA8 [LYQQ]
1333
1422
+
Ser
TGA
[ENA]
¡û
>W1910652542
LYQQ01000038
Bacillota
Ligilactobacillus agilis UMNLA8 [LYQQ]
41028
40939
-
Ser
TGA
[ENA]
¡û
>W1910652566
LYQQ01000059
Bacillota
Ligilactobacillus agilis UMNLA8 [LYQQ]
100016
99927
-
Ser
TGA
[ENA]
¡û
>W1910922799
NIGJ01000004
Bacillota
Levilactobacillus brevis SF9B [NIGJ]
148936
148847
-
Ser
TGA
[ENA]
¡û
>W1910922867
NIGK01000004
Bacillota
Levilactobacillus brevis ZG1 [NIGK]
174963
174874
-
Ser
TGA
[ENA]
¡û
>W1911386137
NVYO01000001
Bacillota
Levilactobacillus brevis D7 [NVYO]
1015837
1015926
+
Ser
TGA
[ENA]
¡û
>W1911532481
OGVC01000015
Bacillota
Latilactobacillus fuchuensis MFPC41A2801 [OGVC]
56703
56792
+
Ser
TGA
[ENA]
¡û
>W1911770085
QXIL01000004
Bacillota
Levilactobacillus suantsaii BCRC 12945 [QXIL]
158142
158053
-
Ser
TGA
[ENA]
¡û
>W1810070447
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
1284308
1284219
-
Ser
TGA
[ENA]
¡û
>W1810472365
QAGU01000001
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
985
1074
+
Ser
TGA
[ENA]
¡û
>W1810476132
QAJZ01000045
Bacillota
Levilactobacillus brevis DM9218 [QAJZ]
992
903
-
Ser
TGA
[ENA]
¡û
>W1810488283
QAZG01000037
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
385
474
+
Ser
TGA
[ENA]
¡û
>W1810489223
QAZW01000030
Bacillota
Levilactobacillus brevis DS1_5 [QAZW]
888
977
+
Ser
TGA
[ENA]
¡û
>W1810584323
QFAS01000004
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
1266
1355
+
Ser
TGA
[ENA]
¡û
>C151082306
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
480233
480322
+
Ser
TGA
[Ensembl]
¡û
>W1511443822
JUTI01000040
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
549
638
+
Ser
TGA
[ENA]
¡û
>W11185067
BACS01000405
Bacillota
Ligilactobacillus acidipiscis KCTC 13900 [BACS]
176
87
-
Ser
TGA
[ENA]
¡û
>W1610031078
AYYN01000145
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
792
881
+
Ser
TGA
[ENA]
¡û
>W1610031413
AYYT01000045
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
255
344
+
Ser
TGA
[ENA]
¡û
>W1610032788
AZCL01000016
Bacillota
Ligilactobacillus pobuzihii E100301 = KCTC 13174 [AZCL]
52066
51977
-
Ser
TGA
[ENA]
¡û
>W1610033007
AZCP01000008
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AZCP]
885
974
+
Ser
TGA
[ENA]
¡û
>W1610033942
AZDI01000009
Bacillota
Dellaglioa algida DSM 15638 [AZDI]
263
352
+
Ser
TGA
[ENA]
¡û
>W1610034554
AZDV01000026
Bacillota
Levilactobacillus acidifarinae DSM 19394 [AZDV]
821
910
+
Ser
TGA
[ENA]
¡û
>W1610034689
AZDX01000103
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
148
59
-
Ser
TGA
[ENA]
¡û
>W1610035093
AZEF01000049
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
753
664
-
Ser
TGA
[ENA]
¡û
>W1610035151
AZEG01000109
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
154
65
-
Ser
TGA
[ENA]
¡û
>W1610035168
AZEH01000037
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
800
889
+
Ser
TGA
[ENA]
¡û
>W1610036205
AZFC01000036
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
136559
136470
-
Ser
TGA
[ENA]
¡û
>W1610073269
BCVU01000115
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
1108
1019
-
Ser
TGA
[ENA]
¡û
>W1610528640
JQBK01000069
Bacillota
Ligilactobacillus acidipiscis [JQBK]
10474
10385
-
Ser
TGA
[ENA]
¡û
>W1610585928
LDEI01000013
Bacillota
Levilactobacillus brevis [LDEI]
76578
76489
-
Ser
TGA
[ENA]
¡û
>W1710028030
AYYN01000145
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
792
881
+
Ser
TGA
[ENA]
¡û
>W1710030119
AZCL01000016
Bacillota
Ligilactobacillus pobuzihii E100301 = KCTC 13174 [AZCL]
52066
51977
-
Ser
TGA
[ENA]
¡û
>W1710031069
AZDI01000009
Bacillota
Dellaglioa algida DSM 15638 [AZDI]
263
352
+
Ser
TGA
[ENA]
¡û
>W1710031681
AZDV01000026
Bacillota
Levilactobacillus acidifarinae DSM 19394 [AZDV]
821
910
+
Ser
TGA
[ENA]
¡û
>W1710031816
AZDX01000103
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
148
59
-
Ser
TGA
[ENA]
¡û
>W1710032220
AZEF01000049
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
753
664
-
Ser
TGA
[ENA]
¡û
>W1710032278
AZEG01000109
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
154
65
-
Ser
TGA
[ENA]
¡û
>W1710032295
AZEH01000037
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
800
889
+
Ser
TGA
[ENA]
¡û
>W1710033244
AZFC01000036
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
136559
136470
-
Ser
TGA
[ENA]
¡û
>W1710070387
BCVU01000115
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
1108
1019
-
Ser
TGA
[ENA]
¡û
>W1710087237
BDQH01000231
Bacillota
Ligilactobacillus acidipiscis [BDQH]
1094
1183
+
Ser
TGA
[ENA]
¡û
>W1710546318
FOCC01000018
Bacillota
Ligilactobacillus ruminis [FOCC]
3264
3175
-
Ser
TGA
[ENA]
¡û
>W1710630230
JQBK01000069
Bacillota
Ligilactobacillus acidipiscis [JQBK]
10474
10385
-
Ser
TGA
[ENA]
¡û
>W1710705208
LDEI01000013
Bacillota
Levilactobacillus brevis [LDEI]
76578
76489
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK