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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98799 (21 seq.)
>W1711009567
LQQU01000003
Betaproteobacteria
Crenobacter luteus [LQQU]
95146
95062
-
Leu
TAG
[ENA]
¡û
>W1711326598
MBFM01000002
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
141750
141666
-
Leu
TAG
[ENA]
¡û
>C001301
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
2045941
2046025
+
Leu
TAG
[Ensembl]
¡û
>C001370
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
4035847
4035763
-
Leu
TAG
[Ensembl]
¡û
>W141216221
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
2604256
2604172
-
Leu
TAG
[ENA]
¡û
>WENV170650555
JRYE01003609
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
4871
4787
-
Leu
TAG
[ENA]
¢þ
>WENV170653123
JRYI01004626
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
4529
4445
-
Leu
TAG
[ENA]
¢þ
>C181060412
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
945334
945418
+
Leu
TAG
-
¡û
>C181060476
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3749700
3749784
+
Leu
TAG
-
¡û
>C191022894
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
2683371
2683455
+
Leu
TAG
-
¡û
>W141557754
JHVK01000003
Betaproteobacteria
Microvirgula aerodenitrificans DSM 15089 [JHVK]
3951
4035
+
Leu
TAG
[ENA]
¡û
>W09125783
ACIS01000004
Betaproteobacteria
Pseudogulbenkiania ferrooxidans 2002 [ACIS]
121515
121599
+
Leu
TAG
[ENA]
¡û
>W1810679176
QKOE01000019
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
46874
46790
-
Leu
TAG
[ENA]
¡û
>W1810696509
QLTJ01000003
Betaproteobacteria
Microvirgula sp. AG722 [QLTJ]
138776
138692
-
Leu
TAG
[ENA]
¡û
>W10111466
ADDK01000002
Betaproteobacteria
Azospira oryzae PS [ADDK]
286984
286900
-
Leu
TAG
[ENA]
¡û
>W1511581011
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
12445
12361
-
Leu
TAG
[ENA]
¡û
>C121000578
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
2743876
2743792
-
Leu
TAG
[Ensembl]
¡û
>C161095089
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
2151124
2151208
+
Leu
TAG
-
¡û
>W1610858087
LQQU01000003
Betaproteobacteria
Crenobacter luteus [LQQU]
95146
95062
-
Leu
TAG
[ENA]
¡û
>W1611063334
MBFM01000002
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
141750
141666
-
Leu
TAG
[ENA]
¡û
>W1710607723
FXAG01000021
Betaproteobacteria
Pseudogulbenkiania subflava DSM 22618 [FXAG]
3536
3620
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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