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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98812 (37 seq.)
>W1710894012
LNFH01000440
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
21008
21092
+
Leu
CAG
[ENA]
¡û
>W1711385334
MEEB01000381
Alphaproteobacteria
Hyphomicrobium sp. SCN 65-11 [MEEB]
1222
1306
+
Leu
CAG
[ENA]
¡û
>W1711961710
NCSQ01000082
Alphaproteobacteria
Aquidulcibacter paucihalophilus TH1-2 [NCSQ]
15296
15212
-
Leu
CAG
[ENA]
¡û
>C010820
CP000158
Alphaproteobacteria
Hyphomonas neptunium ATCC 15444 [CP000158]
1627993
1628077
+
Leu
CAG
[Ensembl]
¡û
>WENV180020301
FTCZ01001304
[FTCZ] metagenome; soil
920026
920110
+
Leu
CAG
[ENA]
¢þ
>WENV180020498
FTCZ01004933
[FTCZ] metagenome; soil
6838
6922
+
Leu
CAG
[ENA]
¢þ
>WENV180095007
MTBK01043389
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
253
169
-
Leu
CAG
[ENA]
¢þ
>WENV180297118
OBJA01010685
[OBJA] soil metagenome; sediment, water from around vicinity
2925
3009
+
Leu
CAG
[ENA]
¢þ
>W141066819
ARYI01000009
Alphaproteobacteria
Hyphomonas hirschiana VP5 [ARYI]
148832
148748
-
Leu
CAG
[ENA]
¡û
>W141066967
ARYM01000005
Alphaproteobacteria
Hyphomonas polymorpha PS728 [ARYM]
102488
102404
-
Leu
CAG
[ENA]
¡û
>WENV181145615
OEHO01363493
[OEHO] metagenome; unknown
68
152
+
Leu
CAG
[ENA]
¢þ
>WENV181169163
OEIV010000482
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2108
2024
-
Leu
CAG
[ENA]
¢þ
>WENV181222574
OFDC01000012
[OFDC] hot springs metagenome; Water
188108
188024
-
Leu
CAG
[ENA]
¢þ
>WENV181222819
OFDC01000367
[OFDC] hot springs metagenome; Water
18130
18214
+
Leu
CAG
[ENA]
¢þ
>WENV181226738
OFDN01000030
[OFDN] hot springs metagenome; Water
149982
149898
-
Leu
CAG
[ENA]
¢þ
>WENV183092532
OLLF01000290
[OLLF] soil metagenome; soil
63783
63699
-
Leu
CAG
[ENA]
¢þ
>WENV183093155
OLLU01000027
[OLLU] soil metagenome; soil
87
3
-
Leu
CAG
[ENA]
¢þ
>WENV170000057
AERA01003911
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
704
788
+
Leu
CAG
[ENA]
¢þ
>WENV170553135
CXWK01008805
[CXWK] wastewater metagenome; activated sludge
3807
3891
+
Leu
CAG
[ENA]
¢þ
>WENV170648966
JRHI01004274
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
5164
5248
+
Leu
CAG
[ENA]
¢þ
>WENV170652311
JRYH01000703
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
85
1
-
Leu
CAG
[ENA]
¢þ
>WENV170652411
JRYH01002376
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
85
1
-
Leu
CAG
[ENA]
¢þ
>WENV170655065
JTFN01003910
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
3719
3803
+
Leu
CAG
[ENA]
¢þ
>WENV170680843
LFEF01027226
[LFEF] freshwater metagenome; waterbloom
485
401
-
Leu
CAG
[ENA]
¢þ
>WENV170714727
LNFM01096147
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
351
435
+
Leu
CAG
[ENA]
¢þ
>C181044807
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
2426941
2426857
-
Leu
CAG
-
¡û
>C181158539
CP027668
Alphaproteobacteria
Phreatobacter cathodiphilus S-12 [CP027668]
3907445
3907361
-
Leu
CAG
-
¡û
>W1910232045
FPEJ01000003
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
556831
556915
+
Leu
CAG
[ENA]
¡û
>W1910236476
FPHO01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
1104426
1104510
+
Leu
CAG
[ENA]
¡û
>C141010522
CP006912
Alphaproteobacteria
Hyphomicrobium nitrativorans NL23 [CP006912]
675317
675233
-
Leu
CAG
[Ensembl]
¡û
>W1810005702
BFBR01000011
Alphaproteobacteria
Candidatus Phycosocius bacilliformis bacilliformis BOTRYCO-2 [BFBR]
91432
91348
-
Leu
CAG
[ENA]
¡û
>W1810195536
PKRQ01000001
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
1041742
1041658
-
Leu
CAG
[ENA]
¡û
>W1810444930
PZKE01000001
Alphaproteobacteria
Fuscovulum blasticum DSM 2131 [PZKE]
42852
42936
+
Leu
CAG
[ENA]
¡û
>W1810707385
QNHG01000002
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
956738
956654
-
Leu
CAG
[ENA]
¡û
>WENV11100415
AERA01003911
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
704
788
+
Leu
CAG
[ENA]
¡û
>C161040209
CP012156
Alphaproteobacteria
Hyphomonadaceae bacterium UKL13-1 [CP012156]
3370075
3369991
-
Leu
CAG
-
¡û
>W1610754278
LNFH01000440
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
21008
21092
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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