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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99048 (33 seq.)
>W1711294787
MABH01000230
Alphaproteobacteria
Cereibacter johrii [MABH]
6931
7015
+
Leu
TAG
[ENA]
¡û
>C171037006
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
1857130
1857046
-
Leu
TAG
-
¡û
>W131058662
ANFS01000044
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
3430
3346
-
Leu
TAG
[ENA]
¡û
>C019231
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
1857201
1857117
-
Leu
TAG
[Ensembl]
¡û
>C019321
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
1873102
1873018
-
Leu
TAG
[Ensembl]
¡û
>WENV180231739
OBCO01000001
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
178269
178185
-
Leu
TAG
[ENA]
¢þ
>WENV180232713
OBCP01000001
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
420385
420301
-
Leu
TAG
[ENA]
¢þ
>w001261
AAAE01000141
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
58799
58883
+
Leu
TAG
[ENA]
¡û
>WENV180569514
OCLR01000122
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
13015
12931
-
Leu
TAG
[ENA]
¢þ
>WENV180570445
OCLS01000119
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
37761
37677
-
Leu
TAG
[ENA]
¢þ
>WENV180571096
OCLT01000002
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
178158
178074
-
Leu
TAG
[ENA]
¢þ
>WENV180573358
OCLW01000006
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
319048
319132
+
Leu
TAG
[ENA]
¢þ
>WENV180639422
OCRL01000002
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
178158
178074
-
Leu
TAG
[ENA]
¢þ
>WENV180640325
OCRM01000001
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
420385
420301
-
Leu
TAG
[ENA]
¢þ
>C181017237
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
1857119
1857035
-
Leu
TAG
-
¡û
>C181191122
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
1857139
1857055
-
Leu
TAG
-
¡û
>C191151001
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
1179548
1179632
+
Leu
TAG
-
¡û
>W09104789
AAMF01000008
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
103636
103552
-
Leu
TAG
[ENA]
¡û
>W1910548877
FZOV01000005
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
312891
312975
+
Leu
TAG
[ENA]
¡û
>C09109069
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
1509209
1509125
-
Leu
TAG
[Ensembl]
¡û
>W1911491905
OAOQ01000001
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
162544
162628
+
Leu
TAG
[ENA]
¡û
>W1911749442
QWGP01000005
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
194485
194401
-
Leu
TAG
[ENA]
¡û
>W1911766284
QXDK01000014
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
8450
8366
-
Leu
TAG
[ENA]
¡û
>W1810116271
PHOB01000040
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
33314
33230
-
Leu
TAG
[ENA]
¡û
>W1810445036
PZKG01000032
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
842
926
+
Leu
TAG
[ENA]
¡û
>W1810463822
PZZW01000002
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
500332
500248
-
Leu
TAG
[ENA]
¡û
>W1810685978
QKZS01000002
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
174315
174399
+
Leu
TAG
[ENA]
¡û
>W1810699116
QMCC01000008
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
580657
580573
-
Leu
TAG
[ENA]
¡û
>W1810785196
QRBG01000025
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
404305
404221
-
Leu
TAG
[ENA]
¡û
>W11160189
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
1249485
1249401
-
Leu
TAG
[ENA]
¡û
>C161048366
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
1857126
1857042
-
Leu
TAG
-
¡û
>W121076790
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
2879071
2878987
-
Leu
TAG
[ENA]
¡û
>W121102137
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
1857135
1857051
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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