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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99099 (19 seq.)
>w027644
ABCJ01000004
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
115512
115426
-
Leu
TAG
[ENA]
¡û
>WENV180275297
OBHT01002017
[OBHT] metagenome; hydrothermal vent
369
285
-
Leu
TAG
[ENA]
¢þ
>WENV180287868
OBIL01008999
[OBIL] metagenome; hydrothermal vent
505
589
+
Leu
TAG
[ENA]
¢þ
>WENV181210166
OFBG01007605
[OFBG] metagenome; hydrothermal vent
708
792
+
Leu
TAG
[ENA]
¢þ
>WENV181212929
OFBU01001842
[OFBU] metagenome; hydrothermal vent
1183
1099
-
Leu
TAG
[ENA]
¢þ
>WENV181213439
OFBV01002505
[OFBV] metagenome; hydrothermal vent
1854
1938
+
Leu
TAG
[ENA]
¢þ
>WENV181213824
OFBW01000617
[OFBW] metagenome; hydrothermal vent
1923
1839
-
Leu
TAG
[ENA]
¢þ
>WENV181214299
OFBX01001121
[OFBX] metagenome; hydrothermal vent
310
226
-
Leu
TAG
[ENA]
¢þ
>WENV181214592
OFBY01002457
[OFBY] metagenome; hydrothermal vent
1290
1374
+
Leu
TAG
[ENA]
¢þ
>WENV181215141
OFBZ01004825
[OFBZ] metagenome; hydrothermal vent
557
641
+
Leu
TAG
[ENA]
¢þ
>WENV181215688
OFCA01007860
[OFCA] metagenome; hydrothermal vent
357
273
-
Leu
TAG
[ENA]
¢þ
>WENV181216126
OFCB01004910
[OFCB] metagenome; hydrothermal vent
325
241
-
Leu
TAG
[ENA]
¢þ
>WENV181216596
OFCC01006098
[OFCC] metagenome; hydrothermal vent
174
90
-
Leu
TAG
[ENA]
¢þ
>C08006800
AP009178
Campylobacterota
Nitratiruptor sp. SB155-2 [AP009178]
199420
199504
+
Leu
TAG
[Ensembl]
¡û
>C191044919
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1701485
1701569
+
Leu
TAG
-
¡û
>C191051427
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
1699006
1699090
+
Leu
TAG
-
¡û
>C191177835
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
155534
155618
+
Leu
TAG
-
¡û
>W1910015361
BDME01000007
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
1737
1653
-
Leu
TAG
[ENA]
¡û
>C09108060
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1620879
1620963
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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