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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99239 (125 seq.)
>W1710811727
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
627059
627143
+
Leu
GAG
[ENA]
¡û
>W1710863639
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
480320
480404
+
Leu
GAG
[ENA]
¡û
>W131175923
ARJQ01000005
Gammaproteobacteria
Rudaea cellulosilytica DSM 22992 [ARJQ]
441624
441708
+
Leu
GAG
[ENA]
¡û
>W131230604
AUHT01000006
Gammaproteobacteria
Lysobacter defluvii DSM 18482 [AUHT]
190864
190948
+
Leu
GAG
[ENA]
¡û
>W131235389
AULN01000018
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
19214
19298
+
Leu
GAG
[ENA]
¡û
>W1711424139
MIDV01000020
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
3904
3820
-
Leu
GAG
[ENA]
¡û
>W1711424211
MIDW01000133
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
3364
3448
+
Leu
GAG
[ENA]
¡û
>C171051947
CP016830
Gammaproteobacteria
Xanthomonas fragariae [CP016830]
1589009
1589093
+
Leu
GAG
-
¡û
>C171051999
CP016833
Gammaproteobacteria
Xanthomonas fragariae [CP016833]
1589011
1589095
+
Leu
GAG
-
¡û
>C171063376
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
3484012
3484096
+
Leu
GAG
-
¡û
>C171131537
LT853880
Gammaproteobacteria
Xanthomonas fragariae NBC2815 [LT853880]
1683179
1683263
+
Leu
GAG
-
¡û
>C171131590
LT853882
Gammaproteobacteria
Xanthomonas fragariae PD885 [LT853882]
1661567
1661651
+
Leu
GAG
-
¡û
>C171131642
LT853885
Gammaproteobacteria
Xanthomonas fragariae PD5205 [LT853885]
1589011
1589095
+
Leu
GAG
-
¡û
>WENV180291362
OBIV01045211
[OBIV] soil metagenome; Clay
129
213
+
Leu
GAG
[ENA]
¢þ
>W141149612
AWZR01000005
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
242655
242739
+
Leu
GAG
[ENA]
¡û
>WENV183729041
PJTQ01003079
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1943
2027
+
Leu
GAG
[ENA]
¢þ
>WENV183744297
PJUK01005454
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
703
619
-
Leu
GAG
[ENA]
¢þ
>WENV170574158
FLYM01009885
[FLYM] hot springs metagenome; Sediment
275
359
+
Leu
GAG
[ENA]
¢þ
>WENV170652935
JRYH01121646
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
333
416
+
Leu
GAG
[ENA]
¢þ
>C181021686
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
2929991
2930075
+
Leu
GAG
-
¡û
>C181080819
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
1528750
1528834
+
Leu
GAG
-
¡û
>C181180371
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
693855
693939
+
Leu
GAG
-
¡û
>C181200082
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1331530
1331446
-
Leu
GAG
-
¡û
>C191145563
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
3235413
3235329
-
Leu
GAG
-
¡û
>C191186012
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1801699
1801783
+
Leu
GAG
-
¡û
>C191189067
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
1531373
1531457
+
Leu
GAG
-
¡û
>W141820701
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
2808702
2808786
+
Leu
GAG
[ENA]
¡û
>W141820823
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
2712673
2712589
-
Leu
GAG
[ENA]
¡û
>W141821265
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
4254619
4254703
+
Leu
GAG
[ENA]
¡û
>W1911162536
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
762968
763052
+
Leu
GAG
[ENA]
¡û
>W1911218356
NRQR01000023
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
39406
39322
-
Leu
GAG
[ENA]
¡û
>W1911283702
NTJF01000013
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
83380
83296
-
Leu
GAG
[ENA]
¡û
>W1911283745
NTJG01000014
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
12355
12439
+
Leu
GAG
[ENA]
¡û
>W1911283791
NTJH01000012
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
83381
83297
-
Leu
GAG
[ENA]
¡û
>W1911283820
NTJI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
527386
527302
-
Leu
GAG
[ENA]
¡û
>W1911405260
NWQM01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML03-0222 [NWQM]
448444
448528
+
Leu
GAG
[ENA]
¡û
>W1911405293
NWQN01000003
Gammaproteobacteria
Xanthomonadaceae bacterium NML75-0749 [NWQN]
80963
80879
-
Leu
GAG
[ENA]
¡û
>W1911405382
NWQO01000017
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
84302
84218
-
Leu
GAG
[ENA]
¡û
>W1911405420
NWQP01000020
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
180545
180629
+
Leu
GAG
[ENA]
¡û
>W1911405471
NWQQ01000021
Gammaproteobacteria
Xanthomonadaceae bacterium NML95-0200 [NWQQ]
29698
29614
-
Leu
GAG
[ENA]
¡û
>W1911405486
NWQR01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
245198
245114
-
Leu
GAG
[ENA]
¡û
>W1911405531
NWQS01000006
Gammaproteobacteria
Xanthomonadaceae bacterium NML120232 [NWQS]
90079
90163
+
Leu
GAG
[ENA]
¡û
>W1911405601
NWQT01000030
Gammaproteobacteria
Xanthomonadaceae bacterium NML07-0707 [NWQT]
6247
6331
+
Leu
GAG
[ENA]
¡û
>W1911542046
ORXX01000091
Gammaproteobacteria
Xanthomonas fragariae CFBP 1558 [ORXX]
16962
17046
+
Leu
GAG
[ENA]
¡û
>W1911542094
ORXY01000091
Gammaproteobacteria
Xanthomonas fragariae CFBP 2510 [ORXY]
16672
16756
+
Leu
GAG
[ENA]
¡û
>W1911542137
ORXZ01000111
Gammaproteobacteria
Xanthomonas fragariae CFBP 4784 [ORXZ]
17064
17148
+
Leu
GAG
[ENA]
¡û
>W1911542187
ORYA01000076
Gammaproteobacteria
Xanthomonas fragariae CFBP 4785 [ORYA]
16583
16667
+
Leu
GAG
[ENA]
¡û
>W1911542235
ORYB01000128
Gammaproteobacteria
Xanthomonas fragariae CFBP 4786 [ORYB]
6286
6370
+
Leu
GAG
[ENA]
¡û
>W1911542281
ORYC01000074
Gammaproteobacteria
Xanthomonas fragariae CFBP 5253 [ORYC]
16819
16903
+
Leu
GAG
[ENA]
¡û
>W1911542331
ORYD01000125
Gammaproteobacteria
Xanthomonas fragariae CFBP 5260 [ORYD]
16557
16641
+
Leu
GAG
[ENA]
¡û
>W1911542379
ORYE01000139
Gammaproteobacteria
Xanthomonas fragariae CFBP 5257 [ORYE]
17005
17089
+
Leu
GAG
[ENA]
¡û
>W1911542429
ORYF01000087
Gammaproteobacteria
Xanthomonas fragariae CFBP 6767 [ORYF]
16717
16801
+
Leu
GAG
[ENA]
¡û
>W1911542474
ORYG01000152
Gammaproteobacteria
Xanthomonas fragariae F1-80 [ORYG]
2122
2206
+
Leu
GAG
[ENA]
¡û
>W1911542527
ORYH01000085
Gammaproteobacteria
Xanthomonas fragariae F1-81 [ORYH]
16746
16830
+
Leu
GAG
[ENA]
¡û
>W1911542592
ORYI01000137
Gammaproteobacteria
Xanthomonas fragariae F2-02 [ORYI]
34926
35010
+
Leu
GAG
[ENA]
¡û
>W1911542618
ORYJ01000124
Gammaproteobacteria
Xanthomonas fragariae GBBC 2087 [ORYJ]
16607
16691
+
Leu
GAG
[ENA]
¡û
>W1911542667
ORYK01000111
Gammaproteobacteria
Xanthomonas fragariae GBBC 2088 [ORYK]
15198
15282
+
Leu
GAG
[ENA]
¡û
>W1911542714
ORYL01000134
Gammaproteobacteria
Xanthomonas fragariae ICMP 13779 [ORYL]
8557
8641
+
Leu
GAG
[ENA]
¡û
>W1911542764
ORYM01000141
Gammaproteobacteria
Xanthomonas fragariae ICMP 20572 [ORYM]
1229
1313
+
Leu
GAG
[ENA]
¡û
>W1911542812
ORYN01000110
Gammaproteobacteria
Xanthomonas fragariae ICMP 13780 [ORYN]
10589
10673
+
Leu
GAG
[ENA]
¡û
>W1911542864
ORYO01000144
Gammaproteobacteria
Xanthomonas fragariae ICMP 20573 [ORYO]
10529
10613
+
Leu
GAG
[ENA]
¡û
>W1911542958
ORYQ01000141
Gammaproteobacteria
Xanthomonas fragariae ICMP 20574 [ORYQ]
16583
16667
+
Leu
GAG
[ENA]
¡û
>W1911543007
ORYR01000138
Gammaproteobacteria
Xanthomonas fragariae ICMP 4019 [ORYR]
9874
9958
+
Leu
GAG
[ENA]
¡û
>W1911543055
ORYS01000137
Gammaproteobacteria
Xanthomonas fragariae ICMP 5813 [ORYS]
2452
2536
+
Leu
GAG
[ENA]
¡û
>W1911543103
ORYT01000158
Gammaproteobacteria
Xanthomonas fragariae ICMP 6269 [ORYT]
13201
13285
+
Leu
GAG
[ENA]
¡û
>W1911543151
ORYU01000153
Gammaproteobacteria
Xanthomonas fragariae ICMP 6277 [ORYU]
16770
16854
+
Leu
GAG
[ENA]
¡û
>W1911543200
ORYV01000144
Gammaproteobacteria
Xanthomonas fragariae ICMP 659 [ORYV]
9864
9948
+
Leu
GAG
[ENA]
¡û
>W1911543270
ORYW01000294
Gammaproteobacteria
Xanthomonas fragariae ICMP 6278 [ORYW]
6441
6357
-
Leu
GAG
[ENA]
¡û
>W1911543298
ORYX01000136
Gammaproteobacteria
Xanthomonas fragariae ICMP 6648 [ORYX]
16564
16648
+
Leu
GAG
[ENA]
¡û
>W1911543346
ORYY01000152
Gammaproteobacteria
Xanthomonas fragariae ICMP 661 [ORYY]
16735
16819
+
Leu
GAG
[ENA]
¡û
>W1911543394
ORYZ01000136
Gammaproteobacteria
Xanthomonas fragariae ICMP 6646 [ORYZ]
16575
16659
+
Leu
GAG
[ENA]
¡û
>W1911543439
ORZA01000081
Gammaproteobacteria
Xanthomonas fragariae JVD-0046 [ORZA]
1033
1117
+
Leu
GAG
[ENA]
¡û
>W1911543488
ORZB01000132
Gammaproteobacteria
Xanthomonas fragariae JVD-0047 [ORZB]
6265
6349
+
Leu
GAG
[ENA]
¡û
>W1911543537
ORZC01000108
Gammaproteobacteria
Xanthomonas fragariae JVD-0051 [ORZC]
17251
17335
+
Leu
GAG
[ENA]
¡û
>W1911543588
ORZD01000101
Gammaproteobacteria
Xanthomonas fragariae NCPPB 2473 [ORZD]
16737
16821
+
Leu
GAG
[ENA]
¡û
>W1911543637
ORZE01000088
Gammaproteobacteria
Xanthomonas fragariae NCPPB 1822 [ORZE]
16566
16650
+
Leu
GAG
[ENA]
¡û
>W1911543687
ORZF01000088
Gammaproteobacteria
Xanthomonas fragariae NBC 2815 [ORZF]
24937
24853
-
Leu
GAG
[ENA]
¡û
>W1911543733
ORZG01000081
Gammaproteobacteria
Xanthomonas fragariae NCPPB 3743 [ORZG]
16557
16641
+
Leu
GAG
[ENA]
¡û
>W1911543780
ORZH01000077
Gammaproteobacteria
Xanthomonas fragariae PD 2659 [ORZH]
16307
16391
+
Leu
GAG
[ENA]
¡û
>W1911543833
ORZI01000094
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
16308
16392
+
Leu
GAG
[ENA]
¡û
>W1911543913
ORZJ01000075
Gammaproteobacteria
Xanthomonas fragariae PD 2905 [ORZJ]
16308
16392
+
Leu
GAG
[ENA]
¡û
>W1911543970
ORZK01000099
Gammaproteobacteria
Xanthomonas fragariae PD 2662 [ORZK]
16308
16392
+
Leu
GAG
[ENA]
¡û
>W1911544020
ORZL01000103
Gammaproteobacteria
Xanthomonas fragariae PD 3145 [ORZL]
16308
16392
+
Leu
GAG
[ENA]
¡û
>W1911544067
ORZM01000082
Gammaproteobacteria
Xanthomonas fragariae PD 3170 [ORZM]
16372
16456
+
Leu
GAG
[ENA]
¡û
>W1911544117
ORZN01000086
Gammaproteobacteria
Xanthomonas fragariae PD 4314 [ORZN]
16308
16392
+
Leu
GAG
[ENA]
¡û
>W1911544167
ORZO01000072
Gammaproteobacteria
Xanthomonas fragariae PD 4634 [ORZO]
16449
16533
+
Leu
GAG
[ENA]
¡û
>W1911544267
ORZQ01000089
Gammaproteobacteria
Xanthomonas fragariae PD 5205 [ORZQ]
16308
16392
+
Leu
GAG
[ENA]
¡û
>W1911544308
ORZR01000048
Gammaproteobacteria
Xanthomonas fragariae PD 5365 [ORZR]
24944
24860
-
Leu
GAG
[ENA]
¡û
>W1911544367
ORZS01000093
Gammaproteobacteria
Xanthomonas fragariae PD 5482 [ORZS]
16307
16391
+
Leu
GAG
[ENA]
¡û
>W1911544416
ORZT01000093
Gammaproteobacteria
Xanthomonas fragariae PD 6879 [ORZT]
16311
16395
+
Leu
GAG
[ENA]
¡û
>W1911544465
ORZU01000079
Gammaproteobacteria
Xanthomonas fragariae PD 6840 [ORZU]
16370
16454
+
Leu
GAG
[ENA]
¡û
>W1911544516
ORZV01000098
Gammaproteobacteria
Xanthomonas fragariae PD 6880 [ORZV]
16365
16449
+
Leu
GAG
[ENA]
¡û
>W1911544566
ORZW01000089
Gammaproteobacteria
Xanthomonas fragariae PD 6881 [ORZW]
16370
16454
+
Leu
GAG
[ENA]
¡û
>W1911544669
ORZY01000085
Gammaproteobacteria
Xanthomonas fragariae PD 6882 [ORZY]
16402
16486
+
Leu
GAG
[ENA]
¡û
>W1911544716
ORZZ01000083
Gammaproteobacteria
Xanthomonas fragariae XF 61 [ORZZ]
16309
16393
+
Leu
GAG
[ENA]
¡û
>W1810477586
QAOX01000007
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
79798
79882
+
Leu
GAG
[ENA]
¡û
>W1810914490
QVPD01000011
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
28871
28787
-
Leu
GAG
[ENA]
¡û
>W1511305097
JPLB01000017
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
61116
61200
+
Leu
GAG
[ENA]
¡û
>W1511305304
JPLD01000496
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
18310
18394
+
Leu
GAG
[ENA]
¡û
>W1511348463
JRKJ01000008
Gammaproteobacteria
Lysobacter dokdonensis DS-58 [JRKJ]
10925
11009
+
Leu
GAG
[ENA]
¡û
>W1511433899
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
1729404
1729488
+
Leu
GAG
[ENA]
¡û
>W1511511117
JXSS01000002
Gammaproteobacteria
Lysobacter sp. A03 [JXSS]
36946
37030
+
Leu
GAG
[ENA]
¡û
>W1511547580
JZRB01000023
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
58746
58830
+
Leu
GAG
[ENA]
¡û
>W1511582556
LASZ01000005
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
116455
116371
-
Leu
GAG
[ENA]
¡û
>C161085625
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
1563910
1563994
+
Leu
GAG
[Ensembl]
¡û
>W1610026732
AVBH01000069
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
6478
6394
-
Leu
GAG
[ENA]
¡û
>W1610027249
AVPS01000004
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
134466
134550
+
Leu
GAG
[ENA]
¡û
>W1610027288
AVPT01000004
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
35980
36064
+
Leu
GAG
[ENA]
¡û
>W1610027330
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
84804
84888
+
Leu
GAG
[ENA]
¡û
>W1610616772
LGRQ01000019
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4968
4884
-
Leu
GAG
[ENA]
¡û
>W1610675824
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
627059
627143
+
Leu
GAG
[ENA]
¡û
>W1610725985
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
480320
480404
+
Leu
GAG
[ENA]
¡û
>W1710022781
AVBH01000069
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
6478
6394
-
Leu
GAG
[ENA]
¡û
>W1710023483
AVPS01000004
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
134466
134550
+
Leu
GAG
[ENA]
¡û
>W1710023522
AVPT01000004
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
35980
36064
+
Leu
GAG
[ENA]
¡û
>W1710023564
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
84804
84888
+
Leu
GAG
[ENA]
¡û
>W1710515270
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
1597987
1597903
-
Leu
GAG
[ENA]
¡û
>W1710545819
FOBU01000003
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
33240
33324
+
Leu
GAG
[ENA]
¡û
>W1710548691
FODZ01000002
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
96544
96460
-
Leu
GAG
[ENA]
¡û
>W1710555184
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
738419
738503
+
Leu
GAG
[ENA]
¡û
>W1710579645
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
181715
181799
+
Leu
GAG
[ENA]
¡û
>W1710595322
FTLW01000004
Gammaproteobacteria
Lysobacter tolerans [FTLW]
159377
159461
+
Leu
GAG
[ENA]
¡û
>W1710601713
FUXP01000001
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
549641
549557
-
Leu
GAG
[ENA]
¡û
>W1710603063
FUYT01000007
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
183963
183879
-
Leu
GAG
[ENA]
¡û
>W1710742111
LGRQ01000019
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4968
4884
-
Leu
GAG
[ENA]
¡û
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