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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99325 (35 seq.)
>W1711411819
MGTO01000139
Thermodesulfobacteriota
Desulfuromonadales bacterium GWC2_61_20 [MGTO]
820
736
-
Tyr
GTA
[ENA]
¡û
>W1711411855
MGTP01000164
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_54_10 [MGTP]
489
405
-
Tyr
GTA
[ENA]
¡û
>W1711414291
MGZH01000200
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
5449
5533
+
Tyr
GTA
[ENA]
¡û
>W1711414312
MGZI01000143
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_48_7 [MGZI]
6185
6269
+
Tyr
GTA
[ENA]
¡û
>W1711414350
MGZJ01000058
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_53_11 [MGZJ]
598
514
-
Tyr
GTA
[ENA]
¡û
>W1711414367
MGZK01000025
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
23014
23098
+
Tyr
GTA
[ENA]
¡û
>W1711414413
MGZL01000033
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
167449
167532
+
Tyr
GTA
[ENA]
¡û
>W131228748
AUGE01000034
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
7816
7900
+
Tyr
GTA
[ENA]
¡û
>C010232
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
1255134
1255218
+
Tyr
GTA
[Ensembl]
¡û
>C017461
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
703659
703743
+
Tyr
GTA
[Ensembl]
¡û
>w024808
AAZA01000030
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
5311
5397
+
Tyr
GTA
[ENA]
¡û
>w018111
AASH01000045
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
699
785
+
Tyr
GTA
[ENA]
¡û
>WENV180298455
OBJA01354204
[OBJA] soil metagenome; sediment, water from around vicinity
22
106
+
Tyr
GTA
[ENA]
¢þ
>WENV180308930
OBJR01331679
[OBJR] soil metagenome; soil
241
157
-
Tyr
GTA
[ENA]
¢þ
>WENV180311597
OBJT01402687
[OBJT] soil metagenome; soil
55
139
+
Tyr
GTA
[ENA]
¢þ
>WENV181165114
OEIR01592262
[OEIR] soil metagenome; soil
119
203
+
Tyr
GTA
[ENA]
¢þ
>WENV181312034
OFJB01034354
[OFJB] sludge metagenome; sludge
469
385
-
Tyr
GTA
[ENA]
¢þ
>W08010653
ABRF01000013
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
16958
16877
-
Tyr
GTA
[ENA]
¡û
>C08005288
CP001089
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [CP001089]
1376444
1376528
+
Tyr
GTA
[Ensembl]
¡û
>C08005182
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1079578
1079662
+
Tyr
GTA
[Ensembl]
¡û
>WENV183672387
ORJL011165932
[ORJL] groundwater metagenome; groundwater
458
542
+
Tyr
GTA
[ENA]
¢þ
>WENV183703370
PDVJ01011338
[PDVJ] alkali sediment metagenome; glacial lake sediment
259
343
+
Tyr
GTA
[ENA]
¢þ
>WENV170661449
JXWV01028445
[JXWV] soil metagenome; rice field; organic FYM Plot
56
140
+
Tyr
GTA
[ENA]
¢þ
>WENV170708153
LNAP01053848
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
990
1074
+
Tyr
GTA
[ENA]
¢þ
>W09103543
AAJH01000016
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
29624
29708
+
Tyr
GTA
[ENA]
¡û
>W09105095
AAON01000144
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
4202
4286
+
Tyr
GTA
[ENA]
¡û
>W09133634
ACPJ01000053
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
1291
1207
-
Tyr
GTA
[ENA]
¡û
>C09106362
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
4034526
4034442
-
Tyr
GTA
[Ensembl]
¡û
>C09106411
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3870108
3870024
-
Tyr
GTA
[Ensembl]
¡û
>C151072480
CP010802
Thermodesulfobacteriota
Desulfuromonas soudanensis WTL [CP010802]
3130947
3130863
-
Tyr
GTA
-
¡û
>C11109557
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
992740
992824
+
Tyr
GTA
[Ensembl]
¡û
>W1610046439
BBCJ01000020
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
84768
84852
+
Tyr
GTA
[ENA]
¡û
>W1710043235
BBCJ01000020
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
84768
84852
+
Tyr
GTA
[ENA]
¡û
>W1710087196
BDQG01000002
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
45439
45355
-
Tyr
GTA
[ENA]
¡û
>W1710600679
FUWR01000019
Thermodesulfobacteriota
Trichlorobacter thiogenes [FUWR]
57346
57430
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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