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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9951 (23 seq.)
>W1710852990
LLWF02000011
Alphaproteobacteria
Roseomonas mucosa [LLWF]
45220
45128
-
Ser
GCT
[ENA]
¡û
>W1710893545
LNEW01000077
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
5630
5538
-
Ser
GCT
[ENA]
¡û
>C171039542
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1754524
1754616
+
Ser
GCT
-
¡û
>C171074547
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1371226
1371318
+
Ser
GCT
-
¡û
>C171074599
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1407762
1407854
+
Ser
GCT
-
¡û
>C171074651
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1367753
1367845
+
Ser
GCT
-
¡û
>C171074703
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1363474
1363566
+
Ser
GCT
-
¡û
>C171074755
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1407763
1407855
+
Ser
GCT
-
¡û
>C171074807
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1371285
1371377
+
Ser
GCT
-
¡û
>C009829
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1371255
1371347
+
Ser
GCT
[Ensembl]
¡û
>W141276640
JADY01000008
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
58419
58511
+
Ser
GCT
[ENA]
¡û
>WENV170645948
JQGF01001491
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
264
172
-
Ser
GCT
[ENA]
¢þ
>C181102055
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
1001374
1001282
-
Ser
GCT
-
¡û
>W141558705
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
100508
100600
+
Ser
GCT
[ENA]
¡û
>W141779187
JONP01000004
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
11906
11814
-
Ser
GCT
[ENA]
¡û
>C151004019
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1367902
1367994
+
Ser
GCT
[Ensembl]
¡û
>C151004094
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2102819
2102727
-
Ser
GCT
[Ensembl]
¡û
>C151004146
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2044514
2044422
-
Ser
GCT
[Ensembl]
¡û
>W121113826
ALOX01000010
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
155298
155206
-
Ser
GCT
[ENA]
¡û
>W1610716147
LLWF01000364
Alphaproteobacteria
Roseomonas mucosa [LLWF]
8229
8321
+
Ser
GCT
[ENA]
¡û
>W1610753811
LNEW01000077
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
5630
5538
-
Ser
GCT
[ENA]
¡û
>W1710084270
BDLP01000030
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
7969
7877
-
Ser
GCT
[ENA]
¡û
>W1710588287
FQZF01000012
Alphaproteobacteria
Roseomonas rosea [FQZF]
21049
20957
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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