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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99793 (21 seq.)
>W131036337
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
1093946
1093865
-
Leu
TAG
[ENA]
¡û
>W1711229699
LXYR01000017
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
54054
54135
+
Leu
TAG
[ENA]
¡û
>W1711335848
MBRE01000055
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
32962
33043
+
Leu
TAG
[ENA]
¡û
>W1711460787
MJGC01000077
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
94301
94219
-
Leu
TAG
[ENA]
¡û
>W1711629792
MPPI01000027
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
49491
49410
-
Leu
TAG
[ENA]
¡û
>W1711666701
MRCE01000034
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
19097
19016
-
Leu
TAG
[ENA]
¡û
>C171000038
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
4946971
4947052
+
Leu
TAG
-
¡û
>C171000101
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
4946971
4947052
+
Leu
TAG
-
¡û
>WENV170640190
JFJP01014423
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
415
496
+
Leu
TAG
[ENA]
¢þ
>WENV170984625
MWVV01369461
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
237
156
-
Leu
TAG
[ENA]
¢þ
>WENV170996038
MWWF01124944
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
474
555
+
Leu
TAG
[ENA]
¢þ
>C181004863
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
1910986
1910905
-
Leu
TAG
-
¡û
>W1810366243
PVWG01000002
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
9077
8996
-
Leu
TAG
[ENA]
¡û
>W1810366419
PVWK01000132
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
34771
34852
+
Leu
TAG
[ENA]
¡û
>W1511535288
JYON01000007
Cyanobacteriota
Aliterella atlantica CENA595 [JYON]
184785
184704
-
Leu
TAG
[ENA]
¡û
>C161002694
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
3549062
3548981
-
Leu
TAG
[Ensembl]
¡û
>W1610057120
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
4912843
4912762
-
Leu
TAG
[ENA]
¡û
>C131004581
CP003600
Cyanobacteriota
Chamaesiphon minutus PCC 6605 [CP003600]
4722515
4722431
-
Leu
TAG
[Ensembl]
¡û
>W1611013569
LXYR01000017
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
54054
54135
+
Leu
TAG
[ENA]
¡û
>W1611066555
MBRE01000055
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
32962
33043
+
Leu
TAG
[ENA]
¡û
>W1710053819
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
4912843
4912762
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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