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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99884 (50 seq.)
>W1711174144
LWDZ01000001
Gammaproteobacteria
Pseudomonas argentinensis [LWDZ]
229437
229352
-
Leu
GAG
[ENA]
¡û
>W1711178775
LWHA01000007
Gammaproteobacteria
Pseudomonas seleniipraecipitans punonensis [LWHA]
19066
19151
+
Leu
GAG
[ENA]
¡û
>W1711212899
LXJR01000017
Gammaproteobacteria
Pseudomonas sp. 21C1 [LXJR]
40176
40091
-
Leu
GAG
[ENA]
¡û
>W1711708765
MSXU01000009
Gammaproteobacteria
Pseudomonas sp. PA1(2017) [MSXU]
1650178
1650093
-
Leu
GAG
[ENA]
¡û
>W1711708795
MSXV01000001
Gammaproteobacteria
Pseudomonas sp. PA15(2017) [MSXV]
52021
51936
-
Leu
GAG
[ENA]
¡û
>W1711708864
MSXW01000014
Gammaproteobacteria
Pseudomonas sp. PA27(2017) [MSXW]
51916
51831
-
Leu
GAG
[ENA]
¡û
>W131218382
ATXQ01000001
Gammaproteobacteria
Denitrificimonas caeni DSM 24390 [ATXQ]
286912
286827
-
Leu
GAG
[ENA]
¡û
>W141217336
AZVM01000006
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I4 [AZVM]
363165
363080
-
Leu
GAG
[ENA]
¡û
>W141217456
AZVO01000015
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I3 [AZVO]
345331
345246
-
Leu
GAG
[ENA]
¡û
>WENV170684076
LFRM01018391
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12767
12682
-
Leu
GAG
[ENA]
¢þ
>WENV170686709
LFRM01159902
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
41024
41109
+
Leu
GAG
[ENA]
¢þ
>WENV170705458
LNAO01000587
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1395
1310
-
Leu
GAG
[ENA]
¢þ
>WENV170708600
LNAP01099209
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
332
417
+
Leu
GAG
[ENA]
¢þ
>WENV170709509
LNFM01000408
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
33736
33821
+
Leu
GAG
[ENA]
¢þ
>WENV170726695
LSQX01390502
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10124
10039
-
Leu
GAG
[ENA]
¢þ
>W1910743726
MHZK01000134
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 [MHZK]
539
454
-
Leu
GAG
[ENA]
¡û
>W1911681240
QJUH01000001
Gammaproteobacteria
Pseudomonas sp. FRB 228 P2A [QJUH]
370982
370897
-
Leu
GAG
[ENA]
¡û
>W1911681315
QJUI01000003
Gammaproteobacteria
Pseudomonas daroniae P9A [QJUI]
169728
169813
+
Leu
GAG
[ENA]
¡û
>W1911681362
QJUJ01000001
Gammaproteobacteria
Pseudomonas daroniae P18A [QJUJ]
425542
425457
-
Leu
GAG
[ENA]
¡û
>W1911681410
QJUK01000001
Gammaproteobacteria
Pseudomonas daroniae P23A [QJUK]
370982
370897
-
Leu
GAG
[ENA]
¡û
>W1911681471
QJUL01000003
Gammaproteobacteria
Pseudomonas dryadis P6B [QJUL]
111191
111106
-
Leu
GAG
[ENA]
¡û
>W1911681553
QJUM01000008
Gammaproteobacteria
Pseudomonas dryadis P26B [QJUM]
155255
155170
-
Leu
GAG
[ENA]
¡û
>W1911681613
QJUN01000013
Gammaproteobacteria
Pseudomonas sp. FRB 230 P27B [QJUN]
32582
32667
+
Leu
GAG
[ENA]
¡û
>W1810476916
QAOJ01000012
Gammaproteobacteria
Pseudomonas sp. GV071 [QAOJ]
18520
18435
-
Leu
GAG
[ENA]
¡û
>W1810486735
QAYB01000012
Gammaproteobacteria
Pseudomonas sp. GV054 [QAYB]
18520
18435
-
Leu
GAG
[ENA]
¡û
>W1810671156
QJSO01000013
Gammaproteobacteria
Pseudomonas sp. GV034 [QJSO]
18520
18435
-
Leu
GAG
[ENA]
¡û
>W1810676380
QKLY01000007
Gammaproteobacteria
Pseudomonas sp. OV467 [QKLY]
227130
227045
-
Leu
GAG
[ENA]
¡û
>W1810684833
QKYW01000001
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I2 [QKYW]
377538
377453
-
Leu
GAG
[ENA]
¡û
>W1810685130
QKZB01000004
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I1 [QKZB]
345343
345258
-
Leu
GAG
[ENA]
¡û
>C151093927
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2411904
2411989
+
Leu
GAG
-
¡û
>C151093994
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1099667
1099582
-
Leu
GAG
-
¡û
>C151094019
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1168456
1168541
+
Leu
GAG
-
¡û
>C151094099
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
743739
743654
-
Leu
GAG
-
¡û
>C151094132
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
2225714
2225799
+
Leu
GAG
-
¡û
>C151094201
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
846646
846561
-
Leu
GAG
-
¡û
>C151094254
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
745461
745376
-
Leu
GAG
-
¡û
>C11117204
CP002727
Gammaproteobacteria
Pseudomonas fulva 12-X [CP002727]
3862513
3862428
-
Leu
GAG
[Ensembl]
¡û
>W1511509233
JXQW01000041
Gammaproteobacteria
Pseudomonas fulva MEJ086 [JXQW]
276460
276545
+
Leu
GAG
[ENA]
¡û
>C161041368
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1906304
1906389
+
Leu
GAG
[Ensembl]
¡û
>W1610605445
LFRZ01000005
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
12767
12682
-
Leu
GAG
[ENA]
¡û
>W1710075761
BCZZ01000004
Gammaproteobacteria
Pseudomonas flavescens NBRC 103044 [BCZZ]
214757
214672
-
Leu
GAG
[ENA]
¡û
>W1710505138
FMTL01000006
Gammaproteobacteria
Pseudomonas peli [FMTL]
41971
42056
+
Leu
GAG
[ENA]
¡û
>W1710515067
FNBM01000002
Gammaproteobacteria
Pseudomonas seleniipraecipitans [FNBM]
435992
435907
-
Leu
GAG
[ENA]
¡û
>W1710517353
FNDG01000005
Gammaproteobacteria
Pseudomonas flavescens [FNDG]
214846
214761
-
Leu
GAG
[ENA]
¡û
>W1710550842
FOFP01000015
Gammaproteobacteria
Pseudomonas cuatrocienegasensis [FOFP]
56885
56970
+
Leu
GAG
[ENA]
¡û
>W1710559359
FOMO01000004
Gammaproteobacteria
Pseudomonas straminea [FOMO]
413103
413018
-
Leu
GAG
[ENA]
¡û
>W1710564394
FOQL01000004
Gammaproteobacteria
Pseudomonas guineae [FOQL]
368444
368529
+
Leu
GAG
[ENA]
¡û
>W1710565244
FORC01000001
Gammaproteobacteria
Pseudomonas argentinensis [FORC]
1165607
1165522
-
Leu
GAG
[ENA]
¡û
>W1710591324
FRBQ01000001
Gammaproteobacteria
Pseudomonas punonensis [FRBQ]
365534
365449
-
Leu
GAG
[ENA]
¡û
>W1710726732
LFRZ01000005
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
12767
12682
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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