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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.99916 (98 seq.)
>W1711540055
MLZL01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
31833
31748
-
Leu
CAG
[ENA]
¡û
>W131232744
AUJM01000012
Actinomycetota
Bifidobacterium sp. AGR2158 [AUJM]
290208
290293
+
Leu
CAG
[ENA]
¡û
>WENV180216995
OBAR01000321
[OBAR] human gut metagenome; human gut
5557
5474
-
Leu
CAG
[ENA]
¢þ
>WENV180278098
OBHX01002039
[OBHX] metagenome; feces
5744
5661
-
Leu
CAG
[ENA]
¢þ
>WENV180332898
OBLF01000025
[OBLF] metagenome; feces
31582
31499
-
Leu
CAG
[ENA]
¢þ
>WENV180347678
OBLO01000918
[OBLO] metagenome; feces
3506
3589
+
Leu
CAG
[ENA]
¢þ
>WENV180495900
OCAC01000068
[OCAC] human gut metagenome; faeces
5583
5500
-
Leu
CAG
[ENA]
¢þ
>WENV180598642
OCPN01000007
[OCPN] human gut metagenome; faeces
151867
151950
+
Leu
CAG
[ENA]
¢þ
>WENV181434076
OGDF01000262
[OGDF] human gut metagenome; human gut
31582
31499
-
Leu
CAG
[ENA]
¢þ
>WENV181439550
OGDN01000045
[OGDN] human gut metagenome; human gut
31577
31494
-
Leu
CAG
[ENA]
¢þ
>W08009148
ABOT01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
31522
31437
-
Leu
CAG
[ENA]
¡û
>WENV181752471
OGQQ01005833
[OGQQ] human gut metagenome; faeces
4743
4660
-
Leu
CAG
[ENA]
¢þ
>WENV181780072
OGRI01064342
[OGRI] human gut metagenome; faeces
73
156
+
Leu
CAG
[ENA]
¢þ
>WENV182340191
OIAD01032130
[OIAD] human gut metagenome; feces
315
398
+
Leu
CAG
[ENA]
¢þ
>W141258200
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
1749189
1749274
+
Leu
CAG
[ENA]
¡û
>WENV182764304
OJRP01007758
[OJRP] human gut metagenome; stool sample
1480
1397
-
Leu
CAG
[ENA]
¢þ
>WENV183106627
OLNL01021637
[OLNL] human gut metagenome; faeces
1012
929
-
Leu
CAG
[ENA]
¢þ
>WENV183133065
OLOB01021318
[OLOB] human gut metagenome; faeces
621
704
+
Leu
CAG
[ENA]
¢þ
>WENV183136028
OLOF01000007
[OLOF] human gut metagenome; faeces
169444
169527
+
Leu
CAG
[ENA]
¢þ
>WENV183144480
OLOL01002895
[OLOL] human gut metagenome; faeces
7190
7107
-
Leu
CAG
[ENA]
¢þ
>WENV183147317
OLON01000060
[OLON] human gut metagenome; faeces
31582
31499
-
Leu
CAG
[ENA]
¢þ
>WENV183171580
OLPC01000444
[OLPC] human gut metagenome; faeces
10068
10151
+
Leu
CAG
[ENA]
¢þ
>WENV183174247
OLPE01000517
[OLPE] human gut metagenome; faeces
2514
2431
-
Leu
CAG
[ENA]
¢þ
>WENV183188490
OLPP01001456
[OLPP] human gut metagenome; faeces
4335
4418
+
Leu
CAG
[ENA]
¢þ
>WENV183215671
OLQG01007972
[OLQG] human gut metagenome; faeces
2278
2195
-
Leu
CAG
[ENA]
¢þ
>WENV183281065
OLSB01030416
[OLSB] human gut metagenome; faeces
246
163
-
Leu
CAG
[ENA]
¢þ
>WENV183291152
OLSI01000293
[OLSI] human gut metagenome; faeces
40222
40305
+
Leu
CAG
[ENA]
¢þ
>WENV183297804
OLSM01010758
[OLSM] human gut metagenome; faeces
754
837
+
Leu
CAG
[ENA]
¢þ
>WENV183500609
OMGQ01045119
[OMGQ] human gut metagenome; human gut
250
333
+
Leu
CAG
[ENA]
¢þ
>WENV183792800
PPYF01463190
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6568
6485
-
Leu
CAG
[ENA]
¢þ
>C181023458
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
112042
111959
-
Leu
CAG
-
¡û
>C181071814
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
614143
614060
-
Leu
CAG
-
¡û
>C191057570
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
114186
114101
-
Leu
CAG
-
¡û
>W141523687
JGYM01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
60958
61043
+
Leu
CAG
[ENA]
¡û
>C191073884
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
111878
111795
-
Leu
CAG
-
¡û
>C191078822
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
116225
116308
+
Leu
CAG
-
¡û
>C191144137
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
112011
111928
-
Leu
CAG
-
¡û
>W1910179765
BJKG01000005
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
169478
169561
+
Leu
CAG
[ENA]
¡û
>W1910179837
BJKH01000012
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
31627
31544
-
Leu
CAG
[ENA]
¡û
>W1910179864
BJKI01000004
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
169479
169562
+
Leu
CAG
[ENA]
¡û
>W1910342700
FTRE01000002
Actinomycetota
Bifidobacterium animalis [FTRE]
31726
31643
-
Leu
CAG
[ENA]
¡û
>W1910343319
FTRP01000002
Actinomycetota
Bifidobacterium animalis [FTRP]
31726
31643
-
Leu
CAG
[ENA]
¡û
>C141002681
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
99856
99771
-
Leu
CAG
[Ensembl]
¡û
>C09101028
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
112448
112363
-
Leu
CAG
[Ensembl]
¡û
>C09101077
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
112011
111926
-
Leu
CAG
[Ensembl]
¡û
>C09101125
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
112011
111926
-
Leu
CAG
[Ensembl]
¡û
>W1910814839
MVOG01000005
Actinomycetota
Bifidobacterium italicum 70 [MVOG]
154487
154402
-
Leu
CAG
[ENA]
¡û
>W1910814902
MVOH01000008
Actinomycetota
Bifidobacterium criceti 71 [MVOH]
56902
56819
-
Leu
CAG
[ENA]
¡û
>W1910910844
NHMR02000002
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
632132
632047
-
Leu
CAG
[ENA]
¡û
>W1910923041
NIGQ01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
31558
31475
-
Leu
CAG
[ENA]
¡û
>W1910923085
NIGR01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
169291
169374
+
Leu
CAG
[ENA]
¡û
>W1911079617
NMYC01000005
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
178853
178768
-
Leu
CAG
[ENA]
¡û
>W1911768197
QXGI01000002
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
175332
175249
-
Leu
CAG
[ENA]
¡û
>W1810084969
PESQ01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
31622
31539
-
Leu
CAG
[ENA]
¡û
>W1810121988
PHUS01000010
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
31621
31538
-
Leu
CAG
[ENA]
¡û
>W1810541591
QDIK01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
169332
169415
+
Leu
CAG
[ENA]
¡û
>W1810541642
QDIL01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
31649
31566
-
Leu
CAG
[ENA]
¡û
>W1810541743
QDIN01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
511
428
-
Leu
CAG
[ENA]
¡û
>W1810541783
QDIO01000034
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
2349
2266
-
Leu
CAG
[ENA]
¡û
>W1810541836
QDIP01000003
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
169497
169580
+
Leu
CAG
[ENA]
¡û
>W1810541940
QDIR01000004
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
169496
169579
+
Leu
CAG
[ENA]
¡û
>W1810542037
QDIT01000002
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
31649
31566
-
Leu
CAG
[ENA]
¡û
>W1810542086
QDIU01000002
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
31649
31566
-
Leu
CAG
[ENA]
¡û
>W1810542120
QDIV01000027
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
21185
21268
+
Leu
CAG
[ENA]
¡û
>W1810542313
QDIZ01000005
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
169446
169529
+
Leu
CAG
[ENA]
¡û
>W1810837822
QSSU01000004
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
169416
169499
+
Leu
CAG
[ENA]
¡û
>W1810839895
QSUF01000004
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
169411
169494
+
Leu
CAG
[ENA]
¡û
>C151024264
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
107484
107401
-
Leu
CAG
[Ensembl]
¡û
>C151026500
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
111880
111795
-
Leu
CAG
[Ensembl]
¡û
>C151033721
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
112391
112306
-
Leu
CAG
[Ensembl]
¡û
>C151042243
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
111878
111793
-
Leu
CAG
[Ensembl]
¡û
>C151068814
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
112011
111926
-
Leu
CAG
[Ensembl]
¡û
>C10101330
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
747638
747553
-
Leu
CAG
[Ensembl]
¡û
>C10101381
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
112011
111926
-
Leu
CAG
[Ensembl]
¡û
>C11101937
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
112011
111926
-
Leu
CAG
[Ensembl]
¡û
>C11101986
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
112021
111936
-
Leu
CAG
[Ensembl]
¡û
>C121002644
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
114320
114235
-
Leu
CAG
[Ensembl]
¡û
>C121013680
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
112011
111926
-
Leu
CAG
[Ensembl]
¡û
>C121013729
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
112011
111926
-
Leu
CAG
[Ensembl]
¡û
>C161087468
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
550852
550767
-
Leu
CAG
[Ensembl]
¡û
>W1610027694
AWFK01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
169337
169252
-
Leu
CAG
[ENA]
¡û
>W1610027735
AWFL01000003
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
31542
31457
-
Leu
CAG
[ENA]
¡û
>W1610027818
AWFM01000008
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
31542
31457
-
Leu
CAG
[ENA]
¡û
>W1610027832
AWFN01000002
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
165502
165417
-
Leu
CAG
[ENA]
¡û
>W1610027918
AWFO01000008
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
226597
226682
+
Leu
CAG
[ENA]
¡û
>W1610027936
AWFP01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
163223
163138
-
Leu
CAG
[ENA]
¡û
>W1610028001
AWFQ01000001
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
168196
168111
-
Leu
CAG
[ENA]
¡û
>W1610083115
CBUQ010000005
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
176665
176580
-
Leu
CAG
[ENA]
¡û
>W121031670
AHGW01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
173886
173801
-
Leu
CAG
[ENA]
¡û
>C131012169
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
111874
111789
-
Leu
CAG
[Ensembl]
¡û
>W1610519200
JDTZ01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
160566
160649
+
Leu
CAG
[ENA]
¡û
>W1610519505
JDUG01000015
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
21988
22073
+
Leu
CAG
[ENA]
¡û
>W1710023902
AWFK01000004
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
169337
169252
-
Leu
CAG
[ENA]
¡û
>W1710023942
AWFN01000002
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
165502
165417
-
Leu
CAG
[ENA]
¡û
>W1710024028
AWFO01000008
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
226597
226682
+
Leu
CAG
[ENA]
¡û
>W1710088235
CBUQ010000005
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
176665
176580
-
Leu
CAG
[ENA]
¡û
>W1710614655
JDTZ01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
160566
160649
+
Leu
CAG
[ENA]
¡û
>W1710614960
JDUG01000015
Actinomycetota
Bifidobacterium magnum DSM 20222 [JDUG]
21988
22073
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK