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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine microbial communities from Global Ocean Sampling (GOS)
Anticodon = ACC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.389840 (1 seq.)
>WENV029614
AACY021213869
Marine microbial communities from Global Ocean Sampling (GOS)
227
305
+
Gly
ACC
[ENA]
Identical group No.732616 (1 seq.)
>WENV002183
AACY020060610
Marine microbial communities from Global Ocean Sampling (GOS)
775
849
+
Gly
ACC
[ENA]
Identical group No.733007 (1 seq.)
>WENV027096
AACY021020617
Marine microbial communities from Global Ocean Sampling (GOS)
635
559
-
Gly
ACC
[ENA]
Identical group No.733026 (2 seq.)
>WENV028439
AACY021121836
Marine microbial communities from Global Ocean Sampling (GOS)
685
609
-
Gly
ACC
[ENA]
>WENV035610
AACY021709942
Marine microbial communities from Global Ocean Sampling (GOS)
575
499
-
Gly
ACC
[ENA]
Identical group No.733087 (2 seq.)
>WENV181369606
OFQP01011262
[OFQP] freshwater metagenome; Freshwater Lake
790
716
-
Gly
ACC
[ENA]
¢þ
>WENV031788
AACY021394883
Marine microbial communities from Global Ocean Sampling (GOS)
211
135
-
Gly
ACC
[ENA]
Identical group No.733478 (1 seq.)
>WENV057228
AACY023289044
Marine microbial communities from Global Ocean Sampling (GOS)
606
530
-
Gly
ACC
[ENA]
Identical group No.733689 (1 seq.)
>WENV063167
AACY023494384
Marine microbial communities from Global Ocean Sampling (GOS)
232
306
+
Gly
ACC
[ENA]
Identical group No.815332 (1 seq.)
>WENV002273
AACY020063827
Marine microbial communities from Global Ocean Sampling (GOS)
357
432
+
Gly
ACC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK