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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = CAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193676 (7 seq.)
>WENV079239
AATA01001979
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
240
156
-
Leu
CAA
[ENA]
>WENV079303
AATB01000050
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
275
359
+
Leu
CAA
[ENA]
>WENV079319
AATB01002218
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
184
268
+
Leu
CAA
[ENA]
>WENV079333
AATB01003961
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
78
162
+
Leu
CAA
[ENA]
>WENV079338
AATB01004861
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
288
372
+
Leu
CAA
[ENA]
>WENV079370
AATB01010850
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
309
393
+
Leu
CAA
[ENA]
>WENV079562
AATF01000062
Gut microbiome of Mouse lean and obese (C57BL/6J)
596
680
+
Leu
CAA
[ENA]
Identical group No.193677 (1 seq.)
>WENV079655
AATF01004518
Gut microbiome of Mouse lean and obese (C57BL/6J)
336
422
+
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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