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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218458 (134 seq.)
>WENV180002292
FLNY01000572
[FLNY] bioreactor metagenome; Moose rumen
183
102
-
Leu
CAG
[ENA]
¢þ
>WENV180002744
FLNY01003756
[FLNY] bioreactor metagenome; Moose rumen
51220
51301
+
Leu
CAG
[ENA]
¢þ
>WENV180181450
OAWM01012845
[OAWM] human gut metagenome; faeces
167
86
-
Leu
CAG
[ENA]
¢þ
>WENV180184301
OAWS01000080
[OAWS] human gut metagenome; faeces
91982
92063
+
Leu
CAG
[ENA]
¢þ
>WENV180307888
OBJQ01005245
[OBJQ] human gut metagenome; human gut
2802
2883
+
Leu
CAG
[ENA]
¢þ
>WENV180462030
OBYB01000101
[OBYB] human gut metagenome; faeces
75368
75449
+
Leu
CAG
[ENA]
¢þ
>WENV180475730
OBYW01000020
[OBYW] human gut metagenome; faeces
185612
185693
+
Leu
CAG
[ENA]
¢þ
>WENV180480359
OBZD01000979
[OBZD] human gut metagenome; faeces
1396
1315
-
Leu
CAG
[ENA]
¢þ
>WENV180502927
OCAM01000780
[OCAM] human gut metagenome; faeces
14885
14804
-
Leu
CAG
[ENA]
¢þ
>WENV180549279
OCIY01058379
[OCIY] human gut metagenome; human gut
264
183
-
Leu
CAG
[ENA]
¢þ
>WENV180565754
OCLH01004342
[OCLH] human gut metagenome; human gut
966
1048
+
Leu
CAG
[ENA]
¢þ
>WENV180567121
OCLL01006355
[OCLL] human gut metagenome; human gut
997
915
-
Leu
CAG
[ENA]
¢þ
>WENV180579635
OCMD01009410
[OCMD] human gut metagenome; human gut
220
138
-
Leu
CAG
[ENA]
¢þ
>WENV180633104
OCQZ01079270
[OCQZ] human gut metagenome; human gut
81
163
+
Leu
CAG
[ENA]
¢þ
>WENV180653467
OCVV010197381
[OCVV] gut metagenome; gut
1487
1406
-
Leu
CAG
[ENA]
¢þ
>WENV180653469
OCVV010197381
[OCVV] gut metagenome; gut
1487
1406
-
Leu
CAG
[ENA]
¢þ
>WENV180674858
OCVV011354686
[OCVV] gut metagenome; gut
21093
21012
-
Leu
CAG
[ENA]
¢þ
>WENV180674861
OCVV011354686
[OCVV] gut metagenome; gut
21093
21012
-
Leu
CAG
[ENA]
¢þ
>WENV180703221
ODEI01000305
[ODEI] human metagenome; G_DNA_Stool
44945
44864
-
Leu
CAG
[ENA]
¢þ
>WENV180746556
ODHN01000091
[ODHN] human metagenome; G_DNA_Stool
100029
100110
+
Leu
CAG
[ENA]
¢þ
>WENV180760606
ODHZ01001378
[ODHZ] human metagenome; G_DNA_Stool
20519
20436
-
Leu
CAG
[ENA]
¢þ
>WENV180770239
ODIH01000053
[ODIH] human metagenome; G_DNA_Stool
96968
97049
+
Leu
CAG
[ENA]
¢þ
>WENV180826349
ODJZ01001949
[ODJZ] human metagenome; G_DNA_Stool
6457
6540
+
Leu
CAG
[ENA]
¢þ
>WENV180869807
ODLN01000085
[ODLN] human metagenome; G_DNA_Stool
5777
5696
-
Leu
CAG
[ENA]
¢þ
>WENV180892155
ODMR01000065
[ODMR] human metagenome; G_DNA_Stool
95100
95181
+
Leu
CAG
[ENA]
¢þ
>WENV180904420
ODPF01000364
[ODPF] human metagenome; G_DNA_Stool
40849
40930
+
Leu
CAG
[ENA]
¢þ
>WENV180916115
ODTB01102100
[ODTB] human metagenome; G_DNA_Stool
77
158
+
Leu
CAG
[ENA]
¢þ
>WENV180918247
ODTG01000053
[ODTG] human metagenome; G_DNA_Stool
95094
95175
+
Leu
CAG
[ENA]
¢þ
>WENV180992722
ODVQ01000026
[ODVQ] human metagenome; G_DNA_Stool
77812
77731
-
Leu
CAG
[ENA]
¢þ
>WENV181053725
ODYI01000561
[ODYI] human metagenome; G_DNA_Stool
52000
51919
-
Leu
CAG
[ENA]
¢þ
>WENV181100258
OECI01173555
[OECI] human metagenome; G_DNA_Stool
77
158
+
Leu
CAG
[ENA]
¢þ
>WENV181116110
OEFA01000100
[OEFA] human gut metagenome; human gut
23880
23962
+
Leu
CAG
[ENA]
¢þ
>WENV181147714
OEHT01000362
[OEHT] human metagenome; G_DNA_Stool
9431
9512
+
Leu
CAG
[ENA]
¢þ
>WENV181161897
OEIM01026117
[OEIM] human gut metagenome; human gut
740
658
-
Leu
CAG
[ENA]
¢þ
>WENV181395055
OFRZ01003967
[OFRZ] human gut metagenome; human gut
159
78
-
Leu
CAG
[ENA]
¢þ
>WENV181454444
OGED01002076
[OGED] metagenome; Human gut stool
2809
2728
-
Leu
CAG
[ENA]
¢þ
>WENV181478746
OGFG01000084
[OGFG] metagenome; Human gut stool
98382
98465
+
Leu
CAG
[ENA]
¢þ
>WENV181502710
OGGJ01000019
[OGGJ] metagenome; Human gut stool
65115
65034
-
Leu
CAG
[ENA]
¢þ
>WENV181502713
OGGJ01000019
[OGGJ] metagenome; Human gut stool
64831
64748
-
Leu
CAG
[ENA]
¢þ
>WENV181553545
OGIR01000060
[OGIR] metagenome; Human gut stool
25515
25596
+
Leu
CAG
[ENA]
¢þ
>WENV181602197
OGLG01004045
[OGLG] metagenome; Human gut stool
166
84
-
Leu
CAG
[ENA]
¢þ
>WENV181641197
OGNF01001886
[OGNF] metagenome; Human gut stool
15252
15335
+
Leu
CAG
[ENA]
¢þ
>WENV181644027
OGNL01000175
[OGNL] metagenome; Human gut stool
30240
30323
+
Leu
CAG
[ENA]
¢þ
>WENV181681894
OGOU01001167
[OGOU] human gut metagenome; faeces
2619
2701
+
Leu
CAG
[ENA]
¢þ
>WENV181725609
OGPY01005712
[OGPY] human gut metagenome; faeces
5099
5180
+
Leu
CAG
[ENA]
¢þ
>WENV181746231
OGQN01000544
[OGQN] human gut metagenome; faeces
29168
29086
-
Leu
CAG
[ENA]
¢þ
>WENV181748744
OGQO01006420
[OGQO] human gut metagenome; faeces
756
838
+
Leu
CAG
[ENA]
¢þ
>WENV181768276
OGRA01001115
[OGRA] human gut metagenome; faeces
9208
9289
+
Leu
CAG
[ENA]
¢þ
>WENV181802372
OGSD01000218
[OGSD] human gut metagenome; faeces
32054
31972
-
Leu
CAG
[ENA]
¢þ
>WENV181860410
OGWR01000847
[OGWR] human gut metagenome; faeces
304
387
+
Leu
CAG
[ENA]
¢þ
>WENV181994737
OHAT01000088
[OHAT] human gut metagenome; faeces
73870
73788
-
Leu
CAG
[ENA]
¢þ
>WENV181997022
OHAU01000767
[OHAU] human gut metagenome; faeces
317
235
-
Leu
CAG
[ENA]
¢þ
>WENV182008709
OHBJ01002824
[OHBJ] human gut metagenome; faeces
3565
3483
-
Leu
CAG
[ENA]
¢þ
>WENV182008834
OHBJ01004083
[OHBJ] human gut metagenome; faeces
6615
6698
+
Leu
CAG
[ENA]
¢þ
>WENV182016344
OHBU01010806
[OHBU] human gut metagenome; feces
426
345
-
Leu
CAG
[ENA]
¢þ
>WENV182032976
OHCW01003590
[OHCW] human gut metagenome; feces
150
232
+
Leu
CAG
[ENA]
¢þ
>WENV182054208
OHEJ01022766
[OHEJ] human gut metagenome; feces
423
342
-
Leu
CAG
[ENA]
¢þ
>WENV182109697
OHIN01003179
[OHIN] human gut metagenome; feces
2087
2169
+
Leu
CAG
[ENA]
¢þ
>WENV182124787
OHJR01015800
[OHJR] human gut metagenome; feces
756
837
+
Leu
CAG
[ENA]
¢þ
>WENV182165598
OHMO01012387
[OHMO] human gut metagenome; feces
1496
1577
+
Leu
CAG
[ENA]
¢þ
>WENV182198225
OHPI01002053
[OHPI] human gut metagenome; feces
5043
5125
+
Leu
CAG
[ENA]
¢þ
>WENV182199286
OHPJ01022697
[OHPJ] human gut metagenome; feces
167
86
-
Leu
CAG
[ENA]
¢þ
>WENV182203649
OHPP01047636
[OHPP] human gut metagenome; feces
675
593
-
Leu
CAG
[ENA]
¢þ
>WENV182231748
OHRM01028492
[OHRM] human gut metagenome; feces
316
398
+
Leu
CAG
[ENA]
¢þ
>WENV182236234
OHRU01003832
[OHRU] human gut metagenome; feces
2624
2705
+
Leu
CAG
[ENA]
¢þ
>WENV182253348
OHTA01001693
[OHTA] human gut metagenome; feces
6664
6746
+
Leu
CAG
[ENA]
¢þ
>WENV182258342
OHTG01019679
[OHTG] human gut metagenome; feces
1139
1057
-
Leu
CAG
[ENA]
¢þ
>WENV182259454
OHTH01052220
[OHTH] human gut metagenome; feces
23
105
+
Leu
CAG
[ENA]
¢þ
>WENV182266025
OHTX01006664
[OHTX] human gut metagenome; feces
588
669
+
Leu
CAG
[ENA]
¢þ
>WENV182318123
OHYF01001294
[OHYF] human gut metagenome; feces
7417
7498
+
Leu
CAG
[ENA]
¢þ
>WENV182631650
OJKW01015785
[OJKW] metagenome; faeces
267
348
+
Leu
CAG
[ENA]
¢þ
>WENV182638448
OJLA01014922
[OJLA] metagenome; faeces
369
450
+
Leu
CAG
[ENA]
¢þ
>WENV182650288
OJMG01071875
[OJMG] human gut metagenome; feces
643
562
-
Leu
CAG
[ENA]
¢þ
>WENV182676414
OJNR01000037
[OJNR] human gut metagenome; human gut
89949
90030
+
Leu
CAG
[ENA]
¢þ
>WENV182709880
OJPC01000241
[OJPC] human gut metagenome; stool sample
261
180
-
Leu
CAG
[ENA]
¢þ
>WENV182729646
OJPY01000019
[OJPY] human gut metagenome; stool sample
93555
93636
+
Leu
CAG
[ENA]
¢þ
>WENV182758213
OJRI01000566
[OJRI] human gut metagenome; stool sample
25172
25253
+
Leu
CAG
[ENA]
¢þ
>WENV182902996
OKSX01000687
[OKSX] human gut metagenome; feces
3985
3903
-
Leu
CAG
[ENA]
¢þ
>WENV182939927
OKVF01001285
[OKVF] human gut metagenome; human gut
2078
2159
+
Leu
CAG
[ENA]
¢þ
>WENV182949180
OKVP01022231
[OKVP] human gut metagenome; human gut
755
674
-
Leu
CAG
[ENA]
¢þ
>WENV182968388
OKXB01001810
[OKXB] human gut metagenome; human gut
4562
4643
+
Leu
CAG
[ENA]
¢þ
>WENV183028538
OLFV01003204
[OLFV] human gut metagenome; faeces
1111
1028
-
Leu
CAG
[ENA]
¢þ
>WENV183036256
OLGA01000422
[OLGA] human gut metagenome; faeces
1957
1874
-
Leu
CAG
[ENA]
¢þ
>WENV183067163
OLIL01013265
[OLIL] metagenome; faeces
198
279
+
Leu
CAG
[ENA]
¢þ
>WENV183068896
OLIQ01043733
[OLIQ] metagenome; faeces
385
466
+
Leu
CAG
[ENA]
¢þ
>WENV183070497
OLIR01066513
[OLIR] metagenome; faeces
322
403
+
Leu
CAG
[ENA]
¢þ
>WENV183079564
OLIX01040943
[OLIX] human gut metagenome; feces
223
140
-
Leu
CAG
[ENA]
¢þ
>WENV183108441
OLNN01000162
[OLNN] human gut metagenome; faeces
3293
3211
-
Leu
CAG
[ENA]
¢þ
>WENV183132754
OLOB01006729
[OLOB] human gut metagenome; faeces
2297
2214
-
Leu
CAG
[ENA]
¢þ
>WENV183161210
OLOV01003196
[OLOV] human gut metagenome; faeces
428
346
-
Leu
CAG
[ENA]
¢þ
>WENV183323445
OLVY01000008
[OLVY] human gut metagenome; feces
90927
90844
-
Leu
CAG
[ENA]
¢þ
>WENV183332063
OLWC01016543
[OLWC] human gut metagenome; feces
1166
1247
+
Leu
CAG
[ENA]
¢þ
>WENV183338520
OLWK01000206
[OLWK] human gut metagenome; feces
24357
24439
+
Leu
CAG
[ENA]
¢þ
>WENV183339733
OLWL01000289
[OLWL] human gut metagenome; feces
13621
13539
-
Leu
CAG
[ENA]
¢þ
>WENV183347911
OLWU01000176
[OLWU] human gut metagenome; feces
368
287
-
Leu
CAG
[ENA]
¢þ
>WENV183359666
OLXI01000244
[OLXI] human gut metagenome; feces
13621
13539
-
Leu
CAG
[ENA]
¢þ
>WENV183367400
OLXQ01000154
[OLXQ] human gut metagenome; feces
9917
10000
+
Leu
CAG
[ENA]
¢þ
>WENV183380281
OLYI01000006
[OLYI] human gut metagenome; feces
244
162
-
Leu
CAG
[ENA]
¢þ
>WENV183390489
OLZC01000008
[OLZC] human gut metagenome; feces
244
162
-
Leu
CAG
[ENA]
¢þ
>WENV183400846
OLZT01000009
[OLZT] human gut metagenome; feces
132585
132667
+
Leu
CAG
[ENA]
¢þ
>WENV183416916
OMAS01020963
[OMAS] human gut metagenome; feces
1113
1030
-
Leu
CAG
[ENA]
¢þ
>WENV183459745
OMDO01003231
[OMDO] human gut metagenome; feces
2698
2781
+
Leu
CAG
[ENA]
¢þ
>WENV183478849
OMFF01000008
[OMFF] human gut metagenome; feces
132585
132667
+
Leu
CAG
[ENA]
¢þ
>WENV183502895
OMGU01000080
[OMGU] human gut metagenome; human gut
92504
92585
+
Leu
CAG
[ENA]
¢þ
>WENV183535529
OOAG01000001
[OOAG] human gut metagenome; human gut
82948
82867
-
Leu
CAG
[ENA]
¢þ
>WENV183539925
OOAJ01001048
[OOAJ] human gut metagenome; human gut
3682
3763
+
Leu
CAG
[ENA]
¢þ
>WENV183568101
OOCB01001949
[OOCB] human gut metagenome; human gut
257
176
-
Leu
CAG
[ENA]
¢þ
>WENV183575758
OOCI01007227
[OOCI] human gut metagenome; human gut
3624
3707
+
Leu
CAG
[ENA]
¢þ
>WENV183577302
OOCK01000002
[OOCK] human gut metagenome; human gut
166
85
-
Leu
CAG
[ENA]
¢þ
>WENV183597154
OODF01000009
[OODF] human gut metagenome; human gut
217143
217224
+
Leu
CAG
[ENA]
¢þ
>WENV183640265
OQVL01002510
[OQVL] human gut metagenome; human gut
6964
7046
+
Leu
CAG
[ENA]
¢þ
>WENV183648417
OQVS01014787
[OQVS] human gut metagenome; human gut
3379
3295
-
Leu
CAG
[ENA]
¢þ
>WENV183761491
PPYE01257177
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
10918
10837
-
Leu
CAG
[ENA]
¢þ
>WENV183773564
PPYF01027059
[PPYF] human gut metagenome; stool from patient with Crohn's disease
341
259
-
Leu
CAG
[ENA]
¢þ
>WENV183789375
PPYF01385069
[PPYF] human gut metagenome; stool from patient with Crohn's disease
12315
12234
-
Leu
CAG
[ENA]
¢þ
>WENV170037100
CDYP01020432
[CDYP] gut metagenome; human stools
100
181
+
Leu
CAG
[ENA]
¢þ
>WENV170063678
CDZK01021455
[CDZK] gut metagenome; human stools
53
134
+
Leu
CAG
[ENA]
¢þ
>WENV170063681
CDZK01021455
[CDZK] gut metagenome; human stools
358
439
+
Leu
CAG
[ENA]
¢þ
>WENV170063783
CDZK01024834
[CDZK] gut metagenome; human stools
153
72
-
Leu
CAG
[ENA]
¢þ
>WENV170085932
CEAB01068792
[CEAB] gut metagenome; human stools
52063
51982
-
Leu
CAG
[ENA]
¢þ
>WENV170086236
CEAC01001078
[CEAC] gut metagenome; human stools
202670
202751
+
Leu
CAG
[ENA]
¢þ
>WENV170105662
CEBV01018189
[CEBV] gut metagenome; human stools
52246
52165
-
Leu
CAG
[ENA]
¢þ
>WENV170106341
CEBV01045154
[CEBV] gut metagenome; human stools
204586
204667
+
Leu
CAG
[ENA]
¢þ
>WENV170106344
CEBV01045154
[CEBV] gut metagenome; human stools
204891
204972
+
Leu
CAG
[ENA]
¢þ
>C191219356
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
1121010
1120929
-
Leu
CAG
-
¡û
>W1810811400
QRYE01000001
Bacteroidota
Paraprevotella clara AF15-8 [QRYE]
74319
74238
-
Leu
CAG
[ENA]
¡û
>W1810873451
QUEM01000010
Bacteroidota
Bacteroides sp. OF04-15BH [QUEM]
61297
61380
+
Leu
CAG
[ENA]
¡û
>W11156984
AFBR01000090
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [AFBR]
238
157
-
Leu
CAG
[ENA]
¡û
>W11163196
AFHP01000086
Bacteroidota
Capnocytophaga sp. oral taxon 329 oral taxon 329 str. F0087 [AFHP]
49206
49125
-
Leu
CAG
[ENA]
¡û
>W121003836
AFFY01000047
Bacteroidota
Paraprevotella clara YIT 11840 [AFFY]
101147
101228
+
Leu
CAG
[ENA]
¡û
>WENV079314
AATB01001138
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
269
352
+
Leu
CAG
[ENA]
>WENV079373
AATC01000005
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
1465
1548
+
Leu
CAG
[ENA]
>WENV079400
AATC01001790
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
505
588
+
Leu
CAG
[ENA]
>WENV079563
AATF01000133
Gut microbiome of Mouse lean and obese (C57BL/6J)
1412
1329
-
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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