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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = CCC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525227 (2 seq.)
>WENV181256894
OFFU01000002
[OFFU] mouse gut metagenome; faeces
561
634
+
Gly
CCC
[ENA]
¢þ
>WENV079600
AATF01001528
Gut microbiome of Mouse lean and obese (C57BL/6J)
543
618
+
Gly
CCC
[ENA]
Identical group No.525228 (1 seq.)
>WENV079638
AATF01003188
Gut microbiome of Mouse lean and obese (C57BL/6J)
556
481
-
Gly
CCC
[ENA]
Identical group No.784655 (37 seq.)
>W131228930
AUGK01000002
Actinomycetota
Adlercreutzia mucosicola DSM 19490 [AUGK]
153247
153174
-
Gly
CCC
[ENA]
¡û
>WENV180506876
OCAS01024081
[OCAS] human gut metagenome; faeces
394
467
+
Gly
CCC
[ENA]
¢þ
>WENV181236814
OFEZ01014908
[OFEZ] mouse gut metagenome; faeces
1098
1171
+
Gly
CCC
[ENA]
¢þ
>WENV181240888
OFFE01014155
[OFFE] mouse gut metagenome; faeces
2179
2252
+
Gly
CCC
[ENA]
¢þ
>WENV181241614
OFFF01002852
[OFFF] mouse gut metagenome; faeces
7139
7212
+
Gly
CCC
[ENA]
¢þ
>WENV181244049
OFFH01008177
[OFFH] mouse gut metagenome; faeces
3369
3442
+
Gly
CCC
[ENA]
¢þ
>WENV181246442
OFFJ01065928
[OFFJ] mouse gut metagenome; faeces
550
623
+
Gly
CCC
[ENA]
¢þ
>WENV181252176
OFFP01005324
[OFFP] mouse gut metagenome; faeces
5509
5582
+
Gly
CCC
[ENA]
¢þ
>WENV181254821
OFFR01072947
[OFFR] mouse gut metagenome; faeces
487
560
+
Gly
CCC
[ENA]
¢þ
>WENV181259791
OFFW01002766
[OFFW] mouse gut metagenome; faeces
6003
6076
+
Gly
CCC
[ENA]
¢þ
>WENV181261245
OFFX01012241
[OFFX] mouse gut metagenome; faeces
964
1037
+
Gly
CCC
[ENA]
¢þ
>WENV181262396
OFFY01004061
[OFFY] mouse gut metagenome; faeces
141
68
-
Gly
CCC
[ENA]
¢þ
>WENV181263999
OFFZ01066507
[OFFZ] mouse gut metagenome; faeces
130
57
-
Gly
CCC
[ENA]
¢þ
>WENV181264672
OFGA01004603
[OFGA] mouse gut metagenome; faeces
4989
4916
-
Gly
CCC
[ENA]
¢þ
>WENV181265738
OFGB01001161
[OFGB] mouse gut metagenome; faeces
9255
9182
-
Gly
CCC
[ENA]
¢þ
>WENV181269454
OFGE01001963
[OFGE] mouse gut metagenome; faeces
13752
13825
+
Gly
CCC
[ENA]
¢þ
>WENV181280932
OFGO01003367
[OFGO] mouse gut metagenome; faeces
4467
4540
+
Gly
CCC
[ENA]
¢þ
>WENV181282369
OFGP01010313
[OFGP] mouse gut metagenome; faeces
965
892
-
Gly
CCC
[ENA]
¢þ
>WENV181284922
OFGR01012829
[OFGR] mouse gut metagenome; faeces
1761
1834
+
Gly
CCC
[ENA]
¢þ
>WENV181287821
OFGX01044178
[OFGX] mouse gut metagenome; faeces
101
28
-
Gly
CCC
[ENA]
¢þ
>WENV181291557
OFHB01053270
[OFHB] mouse gut metagenome; faeces
695
768
+
Gly
CCC
[ENA]
¢þ
>WENV181301944
OFHO01002224
[OFHO] mouse gut metagenome; faeces
6310
6237
-
Gly
CCC
[ENA]
¢þ
>WENV181727440
OGQA01000201
[OGQA] human gut metagenome; faeces
5461
5534
+
Gly
CCC
[ENA]
¢þ
>WENV181740405
OGQJ01006762
[OGQJ] human gut metagenome; faeces
1352
1425
+
Gly
CCC
[ENA]
¢þ
>WENV181746201
OGQN01000476
[OGQN] human gut metagenome; faeces
16557
16484
-
Gly
CCC
[ENA]
¢þ
>WENV181788089
OGRO01000355
[OGRO] human gut metagenome; faeces
4929
5002
+
Gly
CCC
[ENA]
¢þ
>WENV181829297
OGUN01012004
[OGUN] human gut metagenome; faeces
1126
1199
+
Gly
CCC
[ENA]
¢þ
>WENV182943068
OKVH01020779
[OKVH] human gut metagenome; human gut
604
677
+
Gly
CCC
[ENA]
¢þ
>WENV183286800
OLSE01064023
[OLSE] human gut metagenome; faeces
89
16
-
Gly
CCC
[ENA]
¢þ
>WENV183298210
OLSM01084486
[OLSM] human gut metagenome; faeces
463
390
-
Gly
CCC
[ENA]
¢þ
>WENV183345749
OLWR01016677
[OLWR] human gut metagenome; feces
424
497
+
Gly
CCC
[ENA]
¢þ
>WENV183372378
OLXW01009309
[OLXW] human gut metagenome; feces
1646
1719
+
Gly
CCC
[ENA]
¢þ
>W1911680087
QICA01000005
Actinomycetota
Adlercreutzia equolifaciens DSM 18785 [QICA]
102055
101982
-
Gly
CCC
[ENA]
¡û
>W1810914614
QVPV01000003
Actinomycetota
Adlercreutzia equolifaciens JCM 14811 [QVPV]
86460
86387
-
Gly
CCC
[ENA]
¡û
>C151048632
CP009302
Actinomycetota
Berryella intestinalis 68-1-3 [CP009302]
1947796
1947723
-
Gly
CCC
[Ensembl]
¡û
>WENV079363
AATB01008890
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
609
536
-
Gly
CCC
[ENA]
>WENV079581
AATF01000544
Gut microbiome of Mouse lean and obese (C57BL/6J)
986
1059
+
Gly
CCC
[ENA]
Identical group No.799170 (2 seq.)
>W131195830
ASSW01000032
Bacillota
Lachnospiraceae bacterium MD335 COE1 [ASSW]
202437
202507
+
Gly
CCC
[ENA]
¡û
>WENV079700
AATF01011828
Gut microbiome of Mouse lean and obese (C57BL/6J)
224
151
-
Gly
CCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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