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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = CCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664151 (26 seq.)
>WENV180799175
ODJC01002660
[ODJC] human metagenome; G_DNA_Stool
4652
4724
+
Arg
CCG
[ENA]
¢þ
>WENV180969534
ODUU01000276
[ODUU] human metagenome; G_DNA_Stool
21185
21113
-
Arg
CCG
[ENA]
¢þ
>WENV181237979
OFFB01004085
[OFFB] mouse gut metagenome; faeces
2818
2746
-
Arg
CCG
[ENA]
¢þ
>WENV181241842
OFFF01008537
[OFFF] mouse gut metagenome; faeces
206
278
+
Arg
CCG
[ENA]
¢þ
>WENV181254454
OFFR01009666
[OFFR] mouse gut metagenome; faeces
2137
2065
-
Arg
CCG
[ENA]
¢þ
>WENV181256173
OFFT01000636
[OFFT] mouse gut metagenome; faeces
2842
2770
-
Arg
CCG
[ENA]
¢þ
>WENV181262934
OFFY01082893
[OFFY] mouse gut metagenome; faeces
459
387
-
Arg
CCG
[ENA]
¢þ
>WENV181268936
OFGE01000130
[OFGE] mouse gut metagenome; faeces
77838
77910
+
Arg
CCG
[ENA]
¢þ
>WENV181271202
OFGF01011248
[OFGF] mouse gut metagenome; faeces
596
668
+
Arg
CCG
[ENA]
¢þ
>WENV181274760
OFGI01003113
[OFGI] mouse gut metagenome; faeces
74
2
-
Arg
CCG
[ENA]
¢þ
>WENV181276635
OFGK01012684
[OFGK] mouse gut metagenome; faeces
1164
1092
-
Arg
CCG
[ENA]
¢þ
>WENV181277508
OFGL01004376
[OFGL] mouse gut metagenome; faeces
2115
2187
+
Arg
CCG
[ENA]
¢þ
>WENV181278306
OFGM01000690
[OFGM] mouse gut metagenome; faeces
3015
2943
-
Arg
CCG
[ENA]
¢þ
>WENV181279225
OFGN01000231
[OFGN] mouse gut metagenome; faeces
62993
63065
+
Arg
CCG
[ENA]
¢þ
>WENV181289054
OFGZ01006347
[OFGZ] mouse gut metagenome; faeces
2254
2326
+
Arg
CCG
[ENA]
¢þ
>WENV181290111
OFHA01008532
[OFHA] mouse gut metagenome; faeces
561
489
-
Arg
CCG
[ENA]
¢þ
>WENV181291323
OFHB01013117
[OFHB] mouse gut metagenome; faeces
1988
2060
+
Arg
CCG
[ENA]
¢þ
>WENV181303114
OFHP01001322
[OFHP] mouse gut metagenome; faeces
8680
8752
+
Arg
CCG
[ENA]
¢þ
>WENV181599172
OGLB01040156
[OGLB] metagenome; Human gut stool
843
915
+
Arg
CCG
[ENA]
¢þ
>WENV181641259
OGNF01002437
[OGNF] metagenome; Human gut stool
5569
5497
-
Arg
CCG
[ENA]
¢þ
>WENV183723114
PDYJ01000763
[PDYJ] gut metagenome; fecal pellets
910151
910223
+
Arg
CCG
[ENA]
¢þ
>WENV183723328
PDYJ01001530
[PDYJ] gut metagenome; fecal pellets
442743
442815
+
Arg
CCG
[ENA]
¢þ
>WENV183723575
PDYJ01002305
[PDYJ] gut metagenome; fecal pellets
358609
358537
-
Arg
CCG
[ENA]
¢þ
>WENV183773387
PPYF01026737
[PPYF] human gut metagenome; stool from patient with Crohn's disease
20186
20114
-
Arg
CCG
[ENA]
¢þ
>WENV079244
AATA01003150
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
363
289
-
Arg
CCG
[ENA]
>WENV079668
AATF01007388
Gut microbiome of Mouse lean and obese (C57BL/6J)
347
273
-
Arg
CCG
[ENA]
Identical group No.667895 (17 seq.)
>W1711124215
LUJV01000116
Bacteroidota
Bacteroidales bacterium M11 [LUJV]
30653
30581
-
Arg
CCG
[ENA]
¡û
>WENV181344030
OFMJ01050527
[OFMJ] human gut metagenome; human gut
83
11
-
Arg
CCG
[ENA]
¢þ
>WENV181644465
OGNM01000052
[OGNM] metagenome; Human gut stool
65605
65533
-
Arg
CCG
[ENA]
¢þ
>WENV181880570
OGXG01001795
[OGXG] human gut metagenome; faeces
1274
1202
-
Arg
CCG
[ENA]
¢þ
>WENV182000896
OHAY01000827
[OHAY] human gut metagenome; faeces
24866
24794
-
Arg
CCG
[ENA]
¢þ
>WENV182103900
OHHZ01006196
[OHHZ] human gut metagenome; feces
197
125
-
Arg
CCG
[ENA]
¢þ
>WENV182649907
OJMG01025357
[OJMG] human gut metagenome; feces
1463
1391
-
Arg
CCG
[ENA]
¢þ
>WENV183564882
OOBZ01000670
[OOBZ] human gut metagenome; human gut
15249
15177
-
Arg
CCG
[ENA]
¢þ
>WENV183571944
OOCF01000185
[OOCF] human gut metagenome; human gut
27103
27031
-
Arg
CCG
[ENA]
¢þ
>WENV183722977
PDYJ01000004
[PDYJ] gut metagenome; fecal pellets
198611
198685
+
Arg
CCG
[ENA]
¢þ
>WENV183789542
PPYF01385676
[PPYF] human gut metagenome; stool from patient with Crohn's disease
9702
9774
+
Arg
CCG
[ENA]
¢þ
>W1810321524
PUBW01000034
Bacteroidota
Muribaculum intestinale DSM 100746 [PUBW]
5383
5457
+
Arg
CCG
[ENA]
¡û
>W1810325301
PUEE01000033
Bacteroidota
Muribaculum intestinale DSM 100739 [PUEE]
5383
5457
+
Arg
CCG
[ENA]
¡û
>C161087153
CP015402
Bacteroidota
Muribaculum intestinale YL27 [CP015402]
1883231
1883305
+
Arg
CCG
-
¡û
>W1610935254
LUJV01000116
Bacteroidota
Bacteroidales bacterium M11 [LUJV]
30653
30581
-
Arg
CCG
[ENA]
¡û
>WENV079218
AATA01000013
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
1980
2056
+
Arg
CCG
[ENA]
>WENV079575
AATF01000384
Gut microbiome of Mouse lean and obese (C57BL/6J)
238
162
-
Arg
CCG
[ENA]
Identical group No.697089 (7 seq.)
>WENV182940154
OKVF01004014
[OKVF] human gut metagenome; human gut
2690
2618
-
Arg
CCG
[ENA]
¢þ
>WENV182949243
OKVP01028090
[OKVP] human gut metagenome; human gut
224
152
-
Arg
CCG
[ENA]
¢þ
>WENV079306
AATB01000231
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
342
416
+
Arg
CCG
[ENA]
>WENV079341
AATB01005237
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
444
370
-
Arg
CCG
[ENA]
>WENV079359
AATB01008370
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
657
583
-
Arg
CCG
[ENA]
>WENV079533
AATE01005755
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
396
322
-
Arg
CCG
[ENA]
>WENV079593
AATF01001117
Gut microbiome of Mouse lean and obese (C57BL/6J)
387
461
+
Arg
CCG
[ENA]
Identical group No.697092 (1 seq.)
>WENV079674
AATF01008785
Gut microbiome of Mouse lean and obese (C57BL/6J)
352
276
-
Arg
CCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK