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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.697088 (7 seq.)
>WENV182940434
OKVF01014863
[OKVF] human gut metagenome; human gut
801
875
+
Arg
CCT
[ENA]
¢þ
>WENV079243
AATA01003053
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
244
318
+
Arg
CCT
[ENA]
>WENV079269
AATA01005949
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
557
483
-
Arg
CCT
[ENA]
>WENV079308
AATB01000232
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
917
991
+
Arg
CCT
[ENA]
>WENV079323
AATB01002603
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
219
293
+
Arg
CCT
[ENA]
>WENV079546
AATE01007648
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
424
498
+
Arg
CCT
[ENA]
>WENV079583
AATF01000555
Gut microbiome of Mouse lean and obese (C57BL/6J)
1473
1547
+
Arg
CCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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