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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = CGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468959 (120 seq.)
>W1711124108
LUJS01000039
Bacteroidota
Bacteroidales bacterium M8 [LUJS]
69384
69459
+
Thr
CGT
[ENA]
¡û
>W1711124154
LUJT01000049
Bacteroidota
Bacteroidales bacterium M9 [LUJT]
36547
36622
+
Thr
CGT
[ENA]
¡û
>W1711124253
LUJX01000090
Bacteroidota
Bacteroidales bacterium M13 [LUJX]
31722
31797
+
Thr
CGT
[ENA]
¡û
>W1711578083
MNQK01000034
Bacteroidota
Bacteroidales bacterium 52_46 [MNQK]
130001
130076
+
Thr
CGT
[ENA]
¡û
>WENV180341123
OBLI01081432
[OBLI] pig gut metagenome; faeces
819
891
+
Thr
CGT
[ENA]
¢þ
>WENV180811580
ODJN01000302
[ODJN] human metagenome; G_DNA_Stool
53358
53431
+
Thr
CGT
[ENA]
¢þ
>WENV180956476
ODUK01001461
[ODUK] human metagenome; G_DNA_Stool
19502
19429
-
Thr
CGT
[ENA]
¢þ
>WENV180970106
ODUU01001416
[ODUU] human metagenome; G_DNA_Stool
9728
9655
-
Thr
CGT
[ENA]
¢þ
>WENV180971247
ODUU01020351
[ODUU] human metagenome; G_DNA_Stool
1847
1774
-
Thr
CGT
[ENA]
¢þ
>WENV181235460
OFEY01000446
[OFEY] mouse gut metagenome; faeces
24406
24333
-
Thr
CGT
[ENA]
¢þ
>WENV181235496
OFEY01000603
[OFEY] mouse gut metagenome; faeces
26041
25968
-
Thr
CGT
[ENA]
¢þ
>WENV181236304
OFEZ01000208
[OFEZ] mouse gut metagenome; faeces
40422
40349
-
Thr
CGT
[ENA]
¢þ
>WENV181236515
OFEZ01001669
[OFEZ] mouse gut metagenome; faeces
6102
6175
+
Thr
CGT
[ENA]
¢þ
>WENV181237349
OFFB01000125
[OFFB] mouse gut metagenome; faeces
70902
70829
-
Thr
CGT
[ENA]
¢þ
>WENV181237408
OFFB01000198
[OFFB] mouse gut metagenome; faeces
749
676
-
Thr
CGT
[ENA]
¢þ
>WENV181237697
OFFB01001064
[OFFB] mouse gut metagenome; faeces
2882
2809
-
Thr
CGT
[ENA]
¢þ
>WENV181238369
OFFC01000175
[OFFC] mouse gut metagenome; faeces
6991
6918
-
Thr
CGT
[ENA]
¢þ
>WENV181238442
OFFC01000372
[OFFC] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181238690
OFFC01001793
[OFFC] mouse gut metagenome; faeces
2835
2908
+
Thr
CGT
[ENA]
¢þ
>WENV181239204
OFFD01000207
[OFFD] mouse gut metagenome; faeces
28391
28464
+
Thr
CGT
[ENA]
¢þ
>WENV181239307
OFFD01000434
[OFFD] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181241595
OFFF01002513
[OFFF] mouse gut metagenome; faeces
6663
6590
-
Thr
CGT
[ENA]
¢þ
>WENV181242239
OFFG01000009
[OFFG] mouse gut metagenome; faeces
154355
154428
+
Thr
CGT
[ENA]
¢þ
>WENV181242982
OFFG01009172
[OFFG] mouse gut metagenome; faeces
1566
1493
-
Thr
CGT
[ENA]
¢þ
>WENV181243468
OFFH01000066
[OFFH] mouse gut metagenome; faeces
79249
79322
+
Thr
CGT
[ENA]
¢þ
>WENV181244429
OFFI01000053
[OFFI] mouse gut metagenome; faeces
44965
45038
+
Thr
CGT
[ENA]
¢þ
>WENV181244914
OFFI01003361
[OFFI] mouse gut metagenome; faeces
3405
3478
+
Thr
CGT
[ENA]
¢þ
>WENV181245455
OFFJ01000135
[OFFJ] mouse gut metagenome; faeces
739
666
-
Thr
CGT
[ENA]
¢þ
>WENV181245948
OFFJ01004912
[OFFJ] mouse gut metagenome; faeces
4031
4104
+
Thr
CGT
[ENA]
¢þ
>WENV181247523
OFFK01044213
[OFFK] mouse gut metagenome; faeces
356
283
-
Thr
CGT
[ENA]
¢þ
>WENV181247777
OFFL01000093
[OFFL] mouse gut metagenome; faeces
58095
58168
+
Thr
CGT
[ENA]
¢þ
>WENV181248055
OFFL01000631
[OFFL] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181248108
OFFL01000817
[OFFL] mouse gut metagenome; faeces
26039
25966
-
Thr
CGT
[ENA]
¢þ
>WENV181248774
OFFM01000027
[OFFM] mouse gut metagenome; faeces
71185
71258
+
Thr
CGT
[ENA]
¢þ
>WENV181249033
OFFM01000449
[OFFM] mouse gut metagenome; faeces
24987
25062
+
Thr
CGT
[ENA]
¢þ
>WENV181249045
OFFM01000484
[OFFM] mouse gut metagenome; faeces
11832
11905
+
Thr
CGT
[ENA]
¢þ
>WENV181249057
OFFM01000524
[OFFM] mouse gut metagenome; faeces
4208
4281
+
Thr
CGT
[ENA]
¢þ
>WENV181249685
OFFN01000017
[OFFN] mouse gut metagenome; faeces
164079
164152
+
Thr
CGT
[ENA]
¢þ
>WENV181250006
OFFN01000430
[OFFN] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181250043
OFFN01000536
[OFFN] mouse gut metagenome; faeces
4130
4203
+
Thr
CGT
[ENA]
¢þ
>WENV181250902
OFFO01000406
[OFFO] mouse gut metagenome; faeces
26040
25967
-
Thr
CGT
[ENA]
¢þ
>WENV181250912
OFFO01000427
[OFFO] mouse gut metagenome; faeces
12766
12839
+
Thr
CGT
[ENA]
¢þ
>WENV181250939
OFFO01000492
[OFFO] mouse gut metagenome; faeces
26924
26997
+
Thr
CGT
[ENA]
¢þ
>WENV181254384
OFFR01005710
[OFFR] mouse gut metagenome; faeces
2205
2132
-
Thr
CGT
[ENA]
¢þ
>WENV181255665
OFFS01014154
[OFFS] mouse gut metagenome; faeces
158
85
-
Thr
CGT
[ENA]
¢þ
>WENV181256896
OFFU01000002
[OFFU] mouse gut metagenome; faeces
265940
266013
+
Thr
CGT
[ENA]
¢þ
>WENV181257229
OFFU01000372
[OFFU] mouse gut metagenome; faeces
46221
46148
-
Thr
CGT
[ENA]
¢þ
>WENV181257316
OFFU01000574
[OFFU] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181259849
OFFW01004145
[OFFW] mouse gut metagenome; faeces
2873
2800
-
Thr
CGT
[ENA]
¢þ
>WENV181261665
OFFY01000062
[OFFY] mouse gut metagenome; faeces
63641
63568
-
Thr
CGT
[ENA]
¢þ
>WENV181262008
OFFY01000902
[OFFY] mouse gut metagenome; faeces
24007
23934
-
Thr
CGT
[ENA]
¢þ
>WENV181264993
OFGA01017393
[OFGA] mouse gut metagenome; faeces
207
134
-
Thr
CGT
[ENA]
¢þ
>WENV181265936
OFGB01004479
[OFGB] mouse gut metagenome; faeces
2883
2810
-
Thr
CGT
[ENA]
¢þ
>WENV181266490
OFGC01000003
[OFGC] mouse gut metagenome; faeces
265368
265441
+
Thr
CGT
[ENA]
¢þ
>WENV181266926
OFGC01000452
[OFGC] mouse gut metagenome; faeces
26039
25966
-
Thr
CGT
[ENA]
¢þ
>WENV181266978
OFGC01000545
[OFGC] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181269717
OFGE01005766
[OFGE] mouse gut metagenome; faeces
3573
3646
+
Thr
CGT
[ENA]
¢þ
>WENV181270754
OFGF01000963
[OFGF] mouse gut metagenome; faeces
6994
6921
-
Thr
CGT
[ENA]
¢þ
>WENV181272787
OFGG01069433
[OFGG] mouse gut metagenome; faeces
236
163
-
Thr
CGT
[ENA]
¢þ
>WENV181274258
OFGI01000048
[OFGI] mouse gut metagenome; faeces
102578
102505
-
Thr
CGT
[ENA]
¢þ
>WENV181274359
OFGI01000170
[OFGI] mouse gut metagenome; faeces
65457
65530
+
Thr
CGT
[ENA]
¢þ
>WENV181275187
OFGJ01000248
[OFGJ] mouse gut metagenome; faeces
46183
46110
-
Thr
CGT
[ENA]
¢þ
>WENV181275238
OFGJ01000389
[OFGJ] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181275301
OFGJ01000582
[OFGJ] mouse gut metagenome; faeces
24817
24890
+
Thr
CGT
[ENA]
¢þ
>WENV181276056
OFGK01000463
[OFGK] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181276357
OFGK01002471
[OFGK] mouse gut metagenome; faeces
4535
4608
+
Thr
CGT
[ENA]
¢þ
>WENV181277128
OFGL01000452
[OFGL] mouse gut metagenome; faeces
11832
11905
+
Thr
CGT
[ENA]
¢þ
>WENV181277471
OFGL01003335
[OFGL] mouse gut metagenome; faeces
3573
3646
+
Thr
CGT
[ENA]
¢þ
>WENV181277949
OFGM01000022
[OFGM] mouse gut metagenome; faeces
57023
57096
+
Thr
CGT
[ENA]
¢þ
>WENV181278246
OFGM01000485
[OFGM] mouse gut metagenome; faeces
11832
11905
+
Thr
CGT
[ENA]
¢þ
>WENV181278354
OFGM01000981
[OFGM] mouse gut metagenome; faeces
15754
15681
-
Thr
CGT
[ENA]
¢þ
>WENV181278998
OFGN01000002
[OFGN] mouse gut metagenome; faeces
281758
281831
+
Thr
CGT
[ENA]
¢þ
>WENV181279363
OFGN01000462
[OFGN] mouse gut metagenome; faeces
3573
3646
+
Thr
CGT
[ENA]
¢þ
>WENV181279435
OFGN01000621
[OFGN] mouse gut metagenome; faeces
11832
11905
+
Thr
CGT
[ENA]
¢þ
>WENV181280330
OFGO01000097
[OFGO] mouse gut metagenome; faeces
71208
71281
+
Thr
CGT
[ENA]
¢þ
>WENV181283529
OFGQ01005688
[OFGQ] mouse gut metagenome; faeces
3053
2978
-
Thr
CGT
[ENA]
¢þ
>WENV181284105
OFGR01000071
[OFGR] mouse gut metagenome; faeces
90348
90421
+
Thr
CGT
[ENA]
¢þ
>WENV181284318
OFGR01000627
[OFGR] mouse gut metagenome; faeces
8294
8367
+
Thr
CGT
[ENA]
¢þ
>WENV181284327
OFGR01000688
[OFGR] mouse gut metagenome; faeces
21171
21098
-
Thr
CGT
[ENA]
¢þ
>WENV181287405
OFGX01004876
[OFGX] mouse gut metagenome; faeces
3042
3115
+
Thr
CGT
[ENA]
¢þ
>WENV181288611
OFGZ01000392
[OFGZ] mouse gut metagenome; faeces
24408
24335
-
Thr
CGT
[ENA]
¢þ
>WENV181288648
OFGZ01000506
[OFGZ] mouse gut metagenome; faeces
4356
4429
+
Thr
CGT
[ENA]
¢þ
>WENV181288679
OFGZ01000583
[OFGZ] mouse gut metagenome; faeces
14344
14271
-
Thr
CGT
[ENA]
¢þ
>WENV181289967
OFHA01004492
[OFHA] mouse gut metagenome; faeces
1020
947
-
Thr
CGT
[ENA]
¢þ
>WENV181290931
OFHB01000724
[OFHB] mouse gut metagenome; faeces
8208
8135
-
Thr
CGT
[ENA]
¢þ
>WENV181299977
OFHN01000016
[OFHN] mouse gut metagenome; faeces
6966
6893
-
Thr
CGT
[ENA]
¢þ
>WENV181301016
OFHN01021128
[OFHN] mouse gut metagenome; faeces
1736
1661
-
Thr
CGT
[ENA]
¢þ
>WENV181303235
OFHP01003207
[OFHP] mouse gut metagenome; faeces
2885
2812
-
Thr
CGT
[ENA]
¢þ
>WENV181744499
OGQM01000806
[OGQM] human gut metagenome; faeces
4827
4754
-
Thr
CGT
[ENA]
¢þ
>WENV181903390
OGXX01001073
[OGXX] human gut metagenome; faeces
23886
23813
-
Thr
CGT
[ENA]
¢þ
>WENV182042934
OHDP01000179
[OHDP] human gut metagenome; feces
37321
37394
+
Thr
CGT
[ENA]
¢þ
>WENV182055340
OHEL01007058
[OHEL] human gut metagenome; feces
415
488
+
Thr
CGT
[ENA]
¢þ
>WENV182076151
OHFV01000184
[OHFV] human gut metagenome; feces
8492
8419
-
Thr
CGT
[ENA]
¢þ
>WENV182116098
OHJB01007216
[OHJB] human gut metagenome; feces
457
530
+
Thr
CGT
[ENA]
¢þ
>WENV182157923
OHLY01000253
[OHLY] human gut metagenome; feces
37321
37394
+
Thr
CGT
[ENA]
¢þ
>WENV182195229
OHPD01001011
[OHPD] human gut metagenome; feces
3028
2955
-
Thr
CGT
[ENA]
¢þ
>WENV182940279
OKVF01007502
[OKVF] human gut metagenome; human gut
629
556
-
Thr
CGT
[ENA]
¢þ
>WENV183068789
OLIQ01032000
[OLIQ] metagenome; faeces
206
279
+
Thr
CGT
[ENA]
¢þ
>WENV183083344
OLJB01052977
[OLJB] human gut metagenome; human gut
463
388
-
Thr
CGT
[ENA]
¢þ
>WENV183106652
OLNL01025715
[OLNL] human gut metagenome; faeces
637
562
-
Thr
CGT
[ENA]
¢þ
>WENV183152092
OLOQ01002138
[OLOQ] human gut metagenome; faeces
16610
16683
+
Thr
CGT
[ENA]
¢þ
>WENV183164319
OLOX01000087
[OLOX] human gut metagenome; faeces
40556
40483
-
Thr
CGT
[ENA]
¢þ
>WENV183327010
OLWA01000039
[OLWA] human gut metagenome; faeces
139462
139535
+
Thr
CGT
[ENA]
¢þ
>WENV183381816
OLYK01000481
[OLYK] human gut metagenome; feces
1246
1173
-
Thr
CGT
[ENA]
¢þ
>WENV183461758
OMDV01000029
[OMDV] human gut metagenome; feces
17894
17821
-
Thr
CGT
[ENA]
¢þ
>WENV183462531
OMDW01022409
[OMDW] human gut metagenome; feces
1285
1212
-
Thr
CGT
[ENA]
¢þ
>WENV183723259
PDYJ01000831
[PDYJ] gut metagenome; fecal pellets
1972
1899
-
Thr
CGT
[ENA]
¢þ
>WENV183723325
PDYJ01001529
[PDYJ] gut metagenome; fecal pellets
341285
341212
-
Thr
CGT
[ENA]
¢þ
>WENV183723640
PDYJ01002478
[PDYJ] gut metagenome; fecal pellets
8772
8699
-
Thr
CGT
[ENA]
¢þ
>WENV183774283
PPYF01032042
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2520
2593
+
Thr
CGT
[ENA]
¢þ
>WENV183774760
PPYF01052553
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1054
981
-
Thr
CGT
[ENA]
¢þ
>WENV170086294
CEAC01003372
[CEAC] gut metagenome; human stools
80688
80613
-
Thr
CGT
[ENA]
¢þ
>WENV170086515
CEAC01010671
[CEAC] gut metagenome; human stools
8364
8291
-
Thr
CGT
[ENA]
¢þ
>C191175266
CP040121
Bacteroidota
Duncaniella sp. B8 [CP040121]
402197
402124
-
Thr
CGT
-
¡û
>W1810325208
PUEC01000024
Bacteroidota
Duncaniella muris DSM 103720 [PUEC]
39288
39361
+
Thr
CGT
[ENA]
¡û
>W1610935147
LUJS01000039
Bacteroidota
Bacteroidales bacterium M8 [LUJS]
69384
69459
+
Thr
CGT
[ENA]
¡û
>W1610935193
LUJT01000049
Bacteroidota
Bacteroidales bacterium M9 [LUJT]
36547
36622
+
Thr
CGT
[ENA]
¡û
>W1610935292
LUJX01000090
Bacteroidota
Bacteroidales bacterium M13 [LUJX]
31722
31797
+
Thr
CGT
[ENA]
¡û
>WENV079298
AATA01010378
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
238
315
+
Thr
CGT
[ENA]
>WENV079658
AATF01005560
Gut microbiome of Mouse lean and obese (C57BL/6J)
283
360
+
Thr
CGT
[ENA]
Identical group No.525230 (1 seq.)
>WENV079697
AATF01011086
Gut microbiome of Mouse lean and obese (C57BL/6J)
238
313
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK