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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.784172 (78 seq.)
>WENV180134034
OATJ01017251
[OATJ] human gut metagenome; faeces
554
483
-
Gln
CTG
[ENA]
¢þ
>WENV180339318
OBLI01003486
[OBLI] pig gut metagenome; faeces
11300
11229
-
Gln
CTG
[ENA]
¢þ
>WENV180798519
ODJC01000093
[ODJC] human metagenome; G_DNA_Stool
74697
74768
+
Gln
CTG
[ENA]
¢þ
>WENV180799370
ODJC01005849
[ODJC] human metagenome; G_DNA_Stool
3599
3528
-
Gln
CTG
[ENA]
¢þ
>WENV180970039
ODUU01001212
[ODUU] human metagenome; G_DNA_Stool
14831
14902
+
Gln
CTG
[ENA]
¢þ
>WENV181057115
ODYJ01189395
[ODYJ] human metagenome; G_DNA_Stool
112
183
+
Gln
CTG
[ENA]
¢þ
>WENV181134201
OEGF01034792
[OEGF] human metagenome; G_DNA_Stool
1
72
+
Gln
CTG
[ENA]
¢þ
>WENV181235293
OFEY01000103
[OFEY] mouse gut metagenome; faeces
84629
84700
+
Gln
CTG
[ENA]
¢þ
>WENV181235960
OFEY01010107
[OFEY] mouse gut metagenome; faeces
730
659
-
Gln
CTG
[ENA]
¢þ
>WENV181237459
OFFB01000272
[OFFB] mouse gut metagenome; faeces
51203
51274
+
Gln
CTG
[ENA]
¢þ
>WENV181237986
OFFB01004386
[OFFB] mouse gut metagenome; faeces
1706
1635
-
Gln
CTG
[ENA]
¢þ
>WENV181238388
OFFC01000227
[OFFC] mouse gut metagenome; faeces
47561
47632
+
Gln
CTG
[ENA]
¢þ
>WENV181239250
OFFD01000299
[OFFD] mouse gut metagenome; faeces
44114
44185
+
Gln
CTG
[ENA]
¢þ
>WENV181242015
OFFF01022238
[OFFF] mouse gut metagenome; faeces
1707
1636
-
Gln
CTG
[ENA]
¢þ
>WENV181244216
OFFH01028483
[OFFH] mouse gut metagenome; faeces
685
756
+
Gln
CTG
[ENA]
¢þ
>WENV181246115
OFFJ01009093
[OFFJ] mouse gut metagenome; faeces
901
830
-
Gln
CTG
[ENA]
¢þ
>WENV181247743
OFFL01000067
[OFFL] mouse gut metagenome; faeces
44106
44177
+
Gln
CTG
[ENA]
¢þ
>WENV181248932
OFFM01000236
[OFFM] mouse gut metagenome; faeces
3367
3296
-
Gln
CTG
[ENA]
¢þ
>WENV181249255
OFFM01001892
[OFFM] mouse gut metagenome; faeces
746
675
-
Gln
CTG
[ENA]
¢þ
>WENV181249866
OFFN01000168
[OFFN] mouse gut metagenome; faeces
65018
65089
+
Gln
CTG
[ENA]
¢þ
>WENV181250886
OFFO01000323
[OFFO] mouse gut metagenome; faeces
73
2
-
Gln
CTG
[ENA]
¢þ
>WENV181252607
OFFP01065766
[OFFP] mouse gut metagenome; faeces
358
287
-
Gln
CTG
[ENA]
¢þ
>WENV181256074
OFFT01000203
[OFFT] mouse gut metagenome; faeces
1710
1639
-
Gln
CTG
[ENA]
¢þ
>WENV181257670
OFFU01003083
[OFFU] mouse gut metagenome; faeces
4587
4658
+
Gln
CTG
[ENA]
¢þ
>WENV181262852
OFFY01046423
[OFFY] mouse gut metagenome; faeces
690
619
-
Gln
CTG
[ENA]
¢þ
>WENV181263957
OFFZ01050245
[OFFZ] mouse gut metagenome; faeces
114
185
+
Gln
CTG
[ENA]
¢þ
>WENV181265358
OFGA01075979
[OFGA] mouse gut metagenome; faeces
515
444
-
Gln
CTG
[ENA]
¢þ
>WENV181266924
OFGC01000449
[OFGC] mouse gut metagenome; faeces
38403
38474
+
Gln
CTG
[ENA]
¢þ
>WENV181268952
OFGE01000152
[OFGE] mouse gut metagenome; faeces
36586
36657
+
Gln
CTG
[ENA]
¢þ
>WENV181271171
OFGF01009387
[OFGF] mouse gut metagenome; faeces
2481
2552
+
Gln
CTG
[ENA]
¢þ
>WENV181272849
OFGG01094615
[OFGG] mouse gut metagenome; faeces
297
226
-
Gln
CTG
[ENA]
¢þ
>WENV181274394
OFGI01000247
[OFGI] mouse gut metagenome; faeces
3371
3300
-
Gln
CTG
[ENA]
¢þ
>WENV181275135
OFGJ01000145
[OFGJ] mouse gut metagenome; faeces
65061
65132
+
Gln
CTG
[ENA]
¢þ
>WENV181275841
OFGK01000056
[OFGK] mouse gut metagenome; faeces
71548
71477
-
Gln
CTG
[ENA]
¢þ
>WENV181277070
OFGL01000279
[OFGL] mouse gut metagenome; faeces
47612
47683
+
Gln
CTG
[ENA]
¢þ
>WENV181277306
OFGL01001132
[OFGL] mouse gut metagenome; faeces
14053
13982
-
Gln
CTG
[ENA]
¢þ
>WENV181277954
OFGM01000026
[OFGM] mouse gut metagenome; faeces
10086
10157
+
Gln
CTG
[ENA]
¢þ
>WENV181278205
OFGM01000367
[OFGM] mouse gut metagenome; faeces
910
839
-
Gln
CTG
[ENA]
¢þ
>WENV181279070
OFGN01000048
[OFGN] mouse gut metagenome; faeces
44675
44746
+
Gln
CTG
[ENA]
¢þ
>WENV181279311
OFGN01000375
[OFGN] mouse gut metagenome; faeces
3420
3349
-
Gln
CTG
[ENA]
¢þ
>WENV181285027
OFGR01022718
[OFGR] mouse gut metagenome; faeces
100
29
-
Gln
CTG
[ENA]
¢þ
>WENV181288383
OFGZ01000028
[OFGZ] mouse gut metagenome; faeces
44675
44746
+
Gln
CTG
[ENA]
¢þ
>WENV181290265
OFHA01016914
[OFHA] mouse gut metagenome; faeces
981
910
-
Gln
CTG
[ENA]
¢þ
>WENV181299746
OFHM01037027
[OFHM] mouse gut metagenome; faeces
732
661
-
Gln
CTG
[ENA]
¢þ
>WENV181302921
OFHP01000351
[OFHP] mouse gut metagenome; faeces
30130
30201
+
Gln
CTG
[ENA]
¢þ
>WENV181640882
OGNF01000660
[OGNF] metagenome; Human gut stool
6968
7039
+
Gln
CTG
[ENA]
¢þ
>WENV181749466
OGQO01052212
[OGQO] human gut metagenome; faeces
3
74
+
Gln
CTG
[ENA]
¢þ
>WENV181942190
OGYY01062465
[OGYY] human gut metagenome; faeces
230
301
+
Gln
CTG
[ENA]
¢þ
>WENV181984988
OHAJ01000297
[OHAJ] human gut metagenome; faeces
30392
30463
+
Gln
CTG
[ENA]
¢þ
>WENV182109502
OHIN01000732
[OHIN] human gut metagenome; feces
20346
20275
-
Gln
CTG
[ENA]
¢þ
>WENV182137802
OHKL01022856
[OHKL] human gut metagenome; feces
684
613
-
Gln
CTG
[ENA]
¢þ
>WENV182198217
OHPI01001854
[OHPI] human gut metagenome; feces
7657
7586
-
Gln
CTG
[ENA]
¢þ
>WENV182253199
OHTA01000528
[OHTA] human gut metagenome; feces
23476
23547
+
Gln
CTG
[ENA]
¢þ
>WENV182382778
OIDS01033226
[OIDS] human gut metagenome; feces
226
297
+
Gln
CTG
[ENA]
¢þ
>WENV182415650
OIGD01000030
[OIGD] human gut metagenome; human gut
166404
166475
+
Gln
CTG
[ENA]
¢þ
>WENV182648139
OJME01048922
[OJME] human gut metagenome; feces
56
128
+
Gln
CTG
[ENA]
¢þ
>WENV182894805
OKSL01036134
[OKSL] human gut metagenome; feces
4
75
+
Gln
CTG
[ENA]
¢þ
>WENV182903059
OKSX01001047
[OKSX] human gut metagenome; feces
11436
11507
+
Gln
CTG
[ENA]
¢þ
>WENV182972581
OKXI01057543
[OKXI] human gut metagenome; human gut
155
84
-
Gln
CTG
[ENA]
¢þ
>WENV183078808
OLIX01004819
[OLIX] human gut metagenome; feces
2132
2061
-
Gln
CTG
[ENA]
¢þ
>WENV183723124
PDYJ01000763
[PDYJ] gut metagenome; fecal pellets
1688051
1687980
-
Gln
CTG
[ENA]
¢þ
>WENV183723125
PDYJ01000763
[PDYJ] gut metagenome; fecal pellets
1687967
1687896
-
Gln
CTG
[ENA]
¢þ
>WENV183723231
PDYJ01000788
[PDYJ] gut metagenome; fecal pellets
28674
28603
-
Gln
CTG
[ENA]
¢þ
>WENV183723232
PDYJ01000788
[PDYJ] gut metagenome; fecal pellets
28581
28510
-
Gln
CTG
[ENA]
¢þ
>WENV183723233
PDYJ01000788
[PDYJ] gut metagenome; fecal pellets
28488
28417
-
Gln
CTG
[ENA]
¢þ
>WENV183723234
PDYJ01000788
[PDYJ] gut metagenome; fecal pellets
28395
28324
-
Gln
CTG
[ENA]
¢þ
>WENV183723369
PDYJ01001531
[PDYJ] gut metagenome; fecal pellets
827835
827906
+
Gln
CTG
[ENA]
¢þ
>WENV183723370
PDYJ01001531
[PDYJ] gut metagenome; fecal pellets
827925
827996
+
Gln
CTG
[ENA]
¢þ
>WENV183773573
PPYF01027085
[PPYF] human gut metagenome; stool from patient with Crohn's disease
194
265
+
Gln
CTG
[ENA]
¢þ
>WENV183773574
PPYF01027085
[PPYF] human gut metagenome; stool from patient with Crohn's disease
283
354
+
Gln
CTG
[ENA]
¢þ
>WENV170100734
CEAR01002298
[CEAR] gut metagenome; human stools
1165
1236
+
Gln
CTG
[ENA]
¢þ
>WENV170100735
CEAR01002298
[CEAR] gut metagenome; human stools
1264
1335
+
Gln
CTG
[ENA]
¢þ
>WENV170100736
CEAR01002298
[CEAR] gut metagenome; human stools
1363
1434
+
Gln
CTG
[ENA]
¢þ
>WENV170100737
CEAR01002298
[CEAR] gut metagenome; human stools
1462
1533
+
Gln
CTG
[ENA]
¢þ
>WENV170100738
CEAR01002298
[CEAR] gut metagenome; human stools
1561
1632
+
Gln
CTG
[ENA]
¢þ
>WENV170100739
CEAR01002298
[CEAR] gut metagenome; human stools
1660
1731
+
Gln
CTG
[ENA]
¢þ
>WENV079334
AATB01004089
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
261
186
-
Gln
CTG
[ENA]
>WENV079622
AATF01002521
Gut microbiome of Mouse lean and obese (C57BL/6J)
648
573
-
Gln
CTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK