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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = GAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115672 (50 seq.)
>WENV180234442
OBCQ01093904
[OBCQ] human gut metagenome; human gut
91
175
+
Leu
GAG
[ENA]
¢þ
>WENV180325819
OBKS01011488
[OBKS] human gut metagenome; human gut
162
246
+
Leu
GAG
[ENA]
¢þ
>WENV180579823
OCMD01055118
[OCMD] human gut metagenome; human gut
223
307
+
Leu
GAG
[ENA]
¢þ
>WENV180811384
ODJN01000137
[ODJN] human metagenome; G_DNA_Stool
334
250
-
Leu
GAG
[ENA]
¢þ
>WENV180972072
ODUU01201009
[ODUU] human metagenome; G_DNA_Stool
89
173
+
Leu
GAG
[ENA]
¢þ
>WENV181133509
OEGF01000289
[OEGF] human metagenome; G_DNA_Stool
4
88
+
Leu
GAG
[ENA]
¢þ
>WENV181236603
OFEZ01002666
[OFEZ] mouse gut metagenome; faeces
7426
7342
-
Leu
GAG
[ENA]
¢þ
>WENV181238992
OFFC01026583
[OFFC] mouse gut metagenome; faeces
101
185
+
Leu
GAG
[ENA]
¢þ
>WENV181244729
OFFI01000761
[OFFI] mouse gut metagenome; faeces
1694
1610
-
Leu
GAG
[ENA]
¢þ
>WENV181248191
OFFL01001096
[OFFL] mouse gut metagenome; faeces
2874
2958
+
Leu
GAG
[ENA]
¢þ
>WENV181249521
OFFM01011119
[OFFM] mouse gut metagenome; faeces
1694
1610
-
Leu
GAG
[ENA]
¢þ
>WENV181250446
OFFN01010372
[OFFN] mouse gut metagenome; faeces
1694
1610
-
Leu
GAG
[ENA]
¢þ
>WENV181259264
OFFV01050259
[OFFV] mouse gut metagenome; faeces
101
185
+
Leu
GAG
[ENA]
¢þ
>WENV181262733
OFFY01021824
[OFFY] mouse gut metagenome; faeces
101
185
+
Leu
GAG
[ENA]
¢þ
>WENV181267530
OFGC01014642
[OFGC] mouse gut metagenome; faeces
1694
1610
-
Leu
GAG
[ENA]
¢þ
>WENV181268740
OFGD01056387
[OFGD] mouse gut metagenome; faeces
630
546
-
Leu
GAG
[ENA]
¢þ
>WENV181274114
OFGH01059024
[OFGH] mouse gut metagenome; faeces
101
185
+
Leu
GAG
[ENA]
¢þ
>WENV181275376
OFGJ01000968
[OFGJ] mouse gut metagenome; faeces
16560
16476
-
Leu
GAG
[ENA]
¢þ
>WENV181277892
OFGL01058145
[OFGL] mouse gut metagenome; faeces
96
180
+
Leu
GAG
[ENA]
¢þ
>WENV181281030
OFGO01006038
[OFGO] mouse gut metagenome; faeces
4560
4476
-
Leu
GAG
[ENA]
¢þ
>WENV181282674
OFGP01054054
[OFGP] mouse gut metagenome; faeces
101
185
+
Leu
GAG
[ENA]
¢þ
>WENV181283982
OFGQ01065144
[OFGQ] mouse gut metagenome; faeces
101
185
+
Leu
GAG
[ENA]
¢þ
>WENV181284342
OFGR01000749
[OFGR] mouse gut metagenome; faeces
29096
29012
-
Leu
GAG
[ENA]
¢þ
>WENV181802420
OGSD01000317
[OGSD] human gut metagenome; faeces
22424
22508
+
Leu
GAG
[ENA]
¢þ
>WENV182016631
OHBU01046157
[OHBU] human gut metagenome; feces
477
393
-
Leu
GAG
[ENA]
¢þ
>WENV182036189
OHDC01000024
[OHDC] human gut metagenome; feces
56429
56513
+
Leu
GAG
[ENA]
¢þ
>WENV182055479
OHEL01017214
[OHEL] human gut metagenome; feces
1021
937
-
Leu
GAG
[ENA]
¢þ
>WENV182144672
OHKW01024174
[OHKW] human gut metagenome; feces
942
1026
+
Leu
GAG
[ENA]
¢þ
>WENV182241317
OHSF01013133
[OHSF] human gut metagenome; feces
42
126
+
Leu
GAG
[ENA]
¢þ
>WENV182680134
OJNU01000008
[OJNU] human gut metagenome; human gut
4
88
+
Leu
GAG
[ENA]
¢þ
>WENV182695879
OJOK01000010
[OJOK] human gut metagenome; human gut
113
197
+
Leu
GAG
[ENA]
¢þ
>WENV183027493
OLFV01000068
[OLFV] human gut metagenome; faeces
75051
74967
-
Leu
GAG
[ENA]
¢þ
>WENV183036042
OLGA01000085
[OLGA] human gut metagenome; faeces
49356
49440
+
Leu
GAG
[ENA]
¢þ
>WENV183161122
OLOV01002522
[OLOV] human gut metagenome; faeces
65
149
+
Leu
GAG
[ENA]
¢þ
>WENV183323579
OLVY01000142
[OLVY] human gut metagenome; feces
19988
20072
+
Leu
GAG
[ENA]
¢þ
>WENV183338468
OLWK01000116
[OLWK] human gut metagenome; feces
3837
3921
+
Leu
GAG
[ENA]
¢þ
>WENV183339602
OLWL01000060
[OLWL] human gut metagenome; feces
62273
62189
-
Leu
GAG
[ENA]
¢þ
>WENV183359736
OLXI01000479
[OLXI] human gut metagenome; feces
16729
16813
+
Leu
GAG
[ENA]
¢þ
>WENV183381790
OLYK01000041
[OLYK] human gut metagenome; feces
3805
3721
-
Leu
GAG
[ENA]
¢þ
>WENV183395662
OLZI01000007
[OLZI] human gut metagenome; feces
54236
54320
+
Leu
GAG
[ENA]
¢þ
>WENV183439283
OMCG01000006
[OMCG] human gut metagenome; feces
76857
76941
+
Leu
GAG
[ENA]
¢þ
>WENV183455221
OMDI01002146
[OMDI] human gut metagenome; feces
89
173
+
Leu
GAG
[ENA]
¢þ
>WENV183456881
OMDL01000040
[OMDL] human gut metagenome; feces
62642
62558
-
Leu
GAG
[ENA]
¢þ
>WENV183461993
OMDV01011069
[OMDV] human gut metagenome; feces
2005
1921
-
Leu
GAG
[ENA]
¢þ
>WENV183462179
OMDW01000074
[OMDW] human gut metagenome; feces
2005
1921
-
Leu
GAG
[ENA]
¢þ
>WENV183640150
OQVL01001489
[OQVL] human gut metagenome; human gut
5548
5632
+
Leu
GAG
[ENA]
¢þ
>WENV183648984
OQVS01070259
[OQVS] human gut metagenome; human gut
92
176
+
Leu
GAG
[ENA]
¢þ
>W1810321461
PUBV01000012
Bacteroidota
Paramuribaculum intestinale DSM 100764 [PUBV]
56342
56258
-
Leu
GAG
[ENA]
¡û
>W1810325237
PUED01000012
Bacteroidota
Paramuribaculum intestinale DSM 100749 [PUED]
3252
3168
-
Leu
GAG
[ENA]
¡û
>WENV079616
AATF01002353
Gut microbiome of Mouse lean and obese (C57BL/6J)
1118
1030
-
Leu
GAG
[ENA]
Identical group No.126773 (6 seq.)
>WENV182940046
OKVF01002104
[OKVF] human gut metagenome; human gut
4117
4201
+
Leu
GAG
[ENA]
¢þ
>WENV183303574
OLSQ01003357
[OLSQ] human gut metagenome; faeces
5401
5316
-
Leu
GAG
[ENA]
¢þ
>WENV079312
AATB01000705
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
371
459
+
Leu
GAG
[ENA]
>WENV079419
AATC01004065
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
249
337
+
Leu
GAG
[ENA]
>WENV079435
AATC01004817
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
392
480
+
Leu
GAG
[ENA]
>WENV079568
AATF01000245
Gut microbiome of Mouse lean and obese (C57BL/6J)
2067
2155
+
Leu
GAG
[ENA]
Identical group No.126775 (4 seq.)
>WENV079219
AATA01000109
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
570
482
-
Leu
GAG
[ENA]
>WENV079261
AATA01004911
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
586
498
-
Leu
GAG
[ENA]
>WENV079294
AATA01008830
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
177
265
+
Leu
GAG
[ENA]
>WENV079659
AATF01006077
Gut microbiome of Mouse lean and obese (C57BL/6J)
570
482
-
Leu
GAG
[ENA]
Identical group No.250598 (2 seq.)
>WENV079484
AATD01005628
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob1, leptin genotype ob/ob)
114
35
-
Leu
GAG
[ENA]
>WENV079667
AATF01006978
Gut microbiome of Mouse lean and obese (C57BL/6J)
103
24
-
Leu
GAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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