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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.697091 (2 seq.)
>WENV079267
AATA01005541
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
708
633
-
Cys
GCA
[ENA]
>WENV079632
AATF01002749
Gut microbiome of Mouse lean and obese (C57BL/6J)
1
76
+
Cys
GCA
[ENA]
Identical group No.799169 (4 seq.)
>WENV182940405
OKVF01012942
[OKVF] human gut metagenome; human gut
1858
1929
+
Cys
GCA
[ENA]
¢þ
>WENV182949434
OKVP01048962
[OKVP] human gut metagenome; human gut
356
285
-
Cys
GCA
[ENA]
¢þ
>WENV079535
AATE01005986
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
342
267
-
Cys
GCA
[ENA]
>WENV079551
AATF01000013
Gut microbiome of Mouse lean and obese (C57BL/6J)
5606
5531
-
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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