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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232822 (1 seq.)
>WENV079706
AATF01013475
Gut microbiome of Mouse lean and obese (C57BL/6J)
28
106
+
His
GTG
[ENA]
Identical group No.290748 (18 seq.)
>WENV181607872
OGLM01030718
[OGLM] metagenome; Human gut stool
1782
1707
-
His
GTG
[ENA]
¢þ
>WENV181640829
OGNF01000543
[OGNF] metagenome; Human gut stool
16135
16060
-
His
GTG
[ENA]
¢þ
>WENV181901077
OGXW01000349
[OGXW] human gut metagenome; faeces
2907
2982
+
His
GTG
[ENA]
¢þ
>WENV181924536
OGYL01017596
[OGYL] human gut metagenome; faeces
263
338
+
His
GTG
[ENA]
¢þ
>WENV181941855
OGYY01011906
[OGYY] human gut metagenome; faeces
1557
1482
-
His
GTG
[ENA]
¢þ
>WENV181985077
OHAJ01000611
[OHAJ] human gut metagenome; faeces
7014
6939
-
His
GTG
[ENA]
¢þ
>WENV182111678
OHIS01004664
[OHIS] human gut metagenome; feces
2252
2177
-
His
GTG
[ENA]
¢þ
>WENV182177021
OHNJ01004293
[OHNJ] human gut metagenome; feces
2093
2018
-
His
GTG
[ENA]
¢þ
>WENV182746946
OJQV01000090
[OJQV] human gut metagenome; stool sample
70103
70178
+
His
GTG
[ENA]
¢þ
>WENV182964791
OKWR01008641
[OKWR] human gut metagenome; human gut
248
325
+
His
GTG
[ENA]
¢þ
>WENV183338275
OLWJ01057600
[OLWJ] human gut metagenome; feces
166
91
-
His
GTG
[ENA]
¢þ
>WENV183355711
OLXD01018184
[OLXD] human gut metagenome; feces
1249
1174
-
His
GTG
[ENA]
¢þ
>WENV183374611
OLXZ01006172
[OLXZ] human gut metagenome; feces
2192
2267
+
His
GTG
[ENA]
¢þ
>WENV183723382
PDYJ01001531
[PDYJ] gut metagenome; fecal pellets
394353
394278
-
His
GTG
[ENA]
¢þ
>WENV183723603
PDYJ01002307
[PDYJ] gut metagenome; fecal pellets
329104
329180
+
His
GTG
[ENA]
¢þ
>WENV183723604
PDYJ01002307
[PDYJ] gut metagenome; fecal pellets
329212
329288
+
His
GTG
[ENA]
¢þ
>WENV079653
AATF01004513
Gut microbiome of Mouse lean and obese (C57BL/6J)
180
258
+
His
GTG
[ENA]
>WENV079654
AATF01004513
Gut microbiome of Mouse lean and obese (C57BL/6J)
288
366
+
His
GTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK