This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183476 (34 seq.)
>W1711345236
MCNR01000008
Bacillota
Ligilactobacillus animalis [MCNR]
556
640
+
Leu
TAG
[ENA]
¡û
>W1711632486
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
310704
310620
-
Leu
TAG
[ENA]
¡û
>W131144854
AQFS01000046
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
3389
3473
+
Leu
TAG
[ENA]
¡û
>WENV181240317
OFFE01000799
[OFFE] mouse gut metagenome; faeces
3659
3743
+
Leu
TAG
[ENA]
¢þ
>WENV181247148
OFFK01006856
[OFFK] mouse gut metagenome; faeces
616
700
+
Leu
TAG
[ENA]
¢þ
>WENV181254812
OFFR01071774
[OFFR] mouse gut metagenome; faeces
527
443
-
Leu
TAG
[ENA]
¢þ
>WENV181256083
OFFT01000220
[OFFT] mouse gut metagenome; faeces
245
329
+
Leu
TAG
[ENA]
¢þ
>WENV181257239
OFFU01000388
[OFFU] mouse gut metagenome; faeces
2172
2256
+
Leu
TAG
[ENA]
¢þ
>WENV181264235
OFGA01000263
[OFGA] mouse gut metagenome; faeces
46633
46549
-
Leu
TAG
[ENA]
¢þ
>WENV181269217
OFGE01000668
[OFGE] mouse gut metagenome; faeces
35763
35679
-
Leu
TAG
[ENA]
¢þ
>WENV181272239
OFGG01005159
[OFGG] mouse gut metagenome; faeces
245
329
+
Leu
TAG
[ENA]
¢þ
>WENV181280848
OFGO01002429
[OFGO] mouse gut metagenome; faeces
3660
3744
+
Leu
TAG
[ENA]
¢þ
>WENV181283442
OFGQ01003671
[OFGQ] mouse gut metagenome; faeces
7042
6958
-
Leu
TAG
[ENA]
¢þ
>WENV181285061
OFGR01027164
[OFGR] mouse gut metagenome; faeces
245
329
+
Leu
TAG
[ENA]
¢þ
>W141229226
BAMM01000063
Bacillota
Ligilactobacillus apodemi JCM 16172 [BAMM]
357
273
-
Leu
TAG
[ENA]
¡û
>WENV183723251
PDYJ01000822
[PDYJ] gut metagenome; fecal pellets
18258
18342
+
Leu
TAG
[ENA]
¢þ
>C181084720
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
2135238
2135322
+
Leu
TAG
-
¡û
>C181084777
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
837556
837640
+
Leu
TAG
-
¡û
>C191172059
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
309787
309871
+
Leu
TAG
-
¡û
>W141699161
JMHU01000019
Bacillota
Ligilactobacillus animalis [JMHU]
371
455
+
Leu
TAG
[ENA]
¡û
>W1910611606
LFJL01000019
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
478
562
+
Leu
TAG
[ENA]
¡û
>W1910611657
LFJM01000018
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
478
562
+
Leu
TAG
[ENA]
¡û
>W1810225304
POVP01000021
Bacillota
Ligilactobacillus animalis NP51 [POVP]
171
87
-
Leu
TAG
[ENA]
¡û
>W1610031090
AYYN01000150
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
4905
4821
-
Leu
TAG
[ENA]
¡û
>W1610031546
AYYW01000053
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
455
539
+
Leu
TAG
[ENA]
¡û
>W1610037043
AZFT01000048
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
70
154
+
Leu
TAG
[ENA]
¡û
>WENV079380
AATC01000024
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
1573
1659
+
Leu
TAG
[ENA]
>WENV079426
AATC01004403
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
526
440
-
Leu
TAG
[ENA]
>WENV079450
AATC01005664
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
397
311
-
Leu
TAG
[ENA]
>WENV079557
AATF01000050
Gut microbiome of Mouse lean and obese (C57BL/6J)
3729
3815
+
Leu
TAG
[ENA]
>W1710028042
AYYN01000150
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
4905
4821
-
Leu
TAG
[ENA]
¡û
>W1710028473
AYYW01000053
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
455
539
+
Leu
TAG
[ENA]
¡û
>W1710034082
AZFT01000048
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
70
154
+
Leu
TAG
[ENA]
¡û
>W1710081598
BDFM01000112
Bacillota
Ligilactobacillus murinus [BDFM]
339
255
-
Leu
TAG
[ENA]
¡û
Identical group No.193678 (2 seq.)
>WENV079495
AATD01009973
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob1, leptin genotype ob/ob)
244
158
-
Leu
TAG
[ENA]
>WENV079698
AATF01011436
Gut microbiome of Mouse lean and obese (C57BL/6J)
111
25
-
Leu
TAG
[ENA]
Identical group No.221655 (3 seq.)
>WENV183723681
PDYJ01003082
[PDYJ] gut metagenome; fecal pellets
1187551
1187632
+
Leu
TAG
[ENA]
¢þ
>WENV079250
AATA01003767
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
188
273
+
Leu
TAG
[ENA]
>WENV079665
AATF01006612
Gut microbiome of Mouse lean and obese (C57BL/6J)
177
262
+
Leu
TAG
[ENA]
Identical group No.229392 (13 seq.)
>WENV181240002
OFFD01045323
[OFFD] mouse gut metagenome; faeces
485
564
+
Leu
TAG
[ENA]
¢þ
>WENV181253201
OFFQ01001931
[OFFQ] mouse gut metagenome; faeces
9683
9602
-
Leu
TAG
[ENA]
¢þ
>WENV181259752
OFFW01002022
[OFFW] mouse gut metagenome; faeces
8925
8844
-
Leu
TAG
[ENA]
¢þ
>WENV181261131
OFFX01006843
[OFFX] mouse gut metagenome; faeces
5012
4931
-
Leu
TAG
[ENA]
¢þ
>WENV181262473
OFFY01005918
[OFFY] mouse gut metagenome; faeces
5392
5473
+
Leu
TAG
[ENA]
¢þ
>WENV181268777
OFGD01073487
[OFGD] mouse gut metagenome; faeces
404
485
+
Leu
TAG
[ENA]
¢þ
>WENV181270995
OFGF01003783
[OFGF] mouse gut metagenome; faeces
4299
4218
-
Leu
TAG
[ENA]
¢þ
>WENV181277409
OFGL01002343
[OFGL] mouse gut metagenome; faeces
2117
2038
-
Leu
TAG
[ENA]
¢þ
>WENV181278794
OFGM01017215
[OFGM] mouse gut metagenome; faeces
493
414
-
Leu
TAG
[ENA]
¢þ
>WENV181284861
OFGR01010363
[OFGR] mouse gut metagenome; faeces
113
192
+
Leu
TAG
[ENA]
¢þ
>WENV181299253
OFHM01003844
[OFHM] mouse gut metagenome; faeces
2104
2023
-
Leu
TAG
[ENA]
¢þ
>WENV183275154
OLRY01011409
[OLRY] human gut metagenome; faeces
692
613
-
Leu
TAG
[ENA]
¢þ
>WENV079701
AATF01012259
Gut microbiome of Mouse lean and obese (C57BL/6J)
48
130
+
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK