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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.475070 (39 seq.)
>WENV180001099
FLNX01000006
[FLNX] bioreactor metagenome; Moose rumen
47617
47690
+
Gly
TCC
[ENA]
¢þ
>WENV180224207
OBBJ01005776
[OBBJ] human gut metagenome; human gut
20
93
+
Gly
TCC
[ENA]
¢þ
>WENV180224212
OBBJ01006671
[OBBJ] human gut metagenome; human gut
1313
1238
-
Gly
TCC
[ENA]
¢þ
>WENV180341854
OBLI01250080
[OBLI] pig gut metagenome; faeces
160
235
+
Gly
TCC
[ENA]
¢þ
>WENV180798476
ODJC01000042
[ODJC] human metagenome; G_DNA_Stool
1142
1069
-
Gly
TCC
[ENA]
¢þ
>WENV180969901
ODUU01000947
[ODUU] human metagenome; G_DNA_Stool
3856
3783
-
Gly
TCC
[ENA]
¢þ
>WENV180972349
ODUU01422857
[ODUU] human metagenome; G_DNA_Stool
160
87
-
Gly
TCC
[ENA]
¢þ
>WENV181235296
OFEY01000103
[OFEY] mouse gut metagenome; faeces
19437
19364
-
Gly
TCC
[ENA]
¢þ
>WENV181237706
OFFB01001095
[OFFB] mouse gut metagenome; faeces
1142
1069
-
Gly
TCC
[ENA]
¢þ
>WENV181239310
OFFD01000443
[OFFD] mouse gut metagenome; faeces
16382
16455
+
Gly
TCC
[ENA]
¢þ
>WENV181249622
OFFM01031478
[OFFM] mouse gut metagenome; faeces
621
548
-
Gly
TCC
[ENA]
¢þ
>WENV181250926
OFFO01000448
[OFFO] mouse gut metagenome; faeces
19437
19364
-
Gly
TCC
[ENA]
¢þ
>WENV181252605
OFFP01065221
[OFFP] mouse gut metagenome; faeces
39
112
+
Gly
TCC
[ENA]
¢þ
>WENV181256032
OFFT01000128
[OFFT] mouse gut metagenome; faeces
56049
55976
-
Gly
TCC
[ENA]
¢þ
>WENV181257309
OFFU01000562
[OFFU] mouse gut metagenome; faeces
17573
17646
+
Gly
TCC
[ENA]
¢þ
>WENV181274567
OFGI01000790
[OFGI] mouse gut metagenome; faeces
16830
16757
-
Gly
TCC
[ENA]
¢þ
>WENV181278488
OFGM01002363
[OFGM] mouse gut metagenome; faeces
8805
8732
-
Gly
TCC
[ENA]
¢þ
>WENV181288617
OFGZ01000404
[OFGZ] mouse gut metagenome; faeces
19437
19364
-
Gly
TCC
[ENA]
¢þ
>WENV181535276
OGHU01012533
[OGHU] metagenome; Human gut stool
145
218
+
Gly
TCC
[ENA]
¢þ
>WENV181901079
OGXW01000349
[OGXW] human gut metagenome; faeces
29534
29459
-
Gly
TCC
[ENA]
¢þ
>WENV181941965
OGYY01020379
[OGYY] human gut metagenome; faeces
1223
1298
+
Gly
TCC
[ENA]
¢þ
>WENV181985270
OHAJ01001625
[OHAJ] human gut metagenome; faeces
5935
6008
+
Gly
TCC
[ENA]
¢þ
>WENV182009126
OHBJ01008557
[OHBJ] human gut metagenome; faeces
1596
1521
-
Gly
TCC
[ENA]
¢þ
>WENV182137885
OHKL01040850
[OHKL] human gut metagenome; feces
6
81
+
Gly
TCC
[ENA]
¢þ
>WENV182253669
OHTA01015107
[OHTA] human gut metagenome; feces
66
141
+
Gly
TCC
[ENA]
¢þ
>WENV182309093
OHXI01031794
[OHXI] human gut metagenome; feces
448
375
-
Gly
TCC
[ENA]
¢þ
>WENV182747166
OJQV01000529
[OJQV] human gut metagenome; stool sample
11171
11246
+
Gly
TCC
[ENA]
¢þ
>WENV182758166
OJRI01000407
[OJRI] human gut metagenome; stool sample
65
138
+
Gly
TCC
[ENA]
¢þ
>WENV182903052
OKSX01000971
[OKSX] human gut metagenome; feces
40
115
+
Gly
TCC
[ENA]
¢þ
>WENV182924014
OKUF01051154
[OKUF] human gut metagenome; feces
492
419
-
Gly
TCC
[ENA]
¢þ
>WENV182971886
OKXI01004296
[OKXI] human gut metagenome; human gut
1160
1233
+
Gly
TCC
[ENA]
¢þ
>WENV183355421
OLXD01002027
[OLXD] human gut metagenome; feces
73
1
-
Gly
TCC
[ENA]
¢þ
>WENV183374977
OLXZ01043384
[OLXZ] human gut metagenome; feces
122
47
-
Gly
TCC
[ENA]
¢þ
>WENV183723117
PDYJ01000763
[PDYJ] gut metagenome; fecal pellets
1004522
1004597
+
Gly
TCC
[ENA]
¢þ
>WENV183723356
PDYJ01001530
[PDYJ] gut metagenome; fecal pellets
360165
360090
-
Gly
TCC
[ENA]
¢þ
>WENV183723568
PDYJ01002305
[PDYJ] gut metagenome; fecal pellets
446047
446122
+
Gly
TCC
[ENA]
¢þ
>WENV183773343
PPYF01026684
[PPYF] human gut metagenome; stool from patient with Crohn's disease
29466
29541
+
Gly
TCC
[ENA]
¢þ
>WENV079236
AATA01001972
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean1, leptin genotype +/+)
642
567
-
Gly
TCC
[ENA]
>WENV079646
AATF01003753
Gut microbiome of Mouse lean and obese (C57BL/6J)
610
535
-
Gly
TCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK