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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = TCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337320 (21 seq.)
>W1710978976
LPNF01000014
Unclassified
bacterium F083 [LPNF]
29130
29206
+
Arg
TCT
[ENA]
¡û
>W1711135839
LUZN01000055
Bacteroidota
Bacteroidales bacterium Bact_22 [LUZN]
18232
18308
+
Arg
TCT
[ENA]
¡û
>WENV180000764
FLNV01001682
[FLNV] bioreactor metagenome; Moose rumen
1411
1337
-
Arg
TCT
[ENA]
¢þ
>WENV180001339
FLNX01001625
[FLNX] bioreactor metagenome; Moose rumen
5172
5098
-
Arg
TCT
[ENA]
¢þ
>WENV180002084
FLNX01005009
[FLNX] bioreactor metagenome; Moose rumen
74286
74361
+
Arg
TCT
[ENA]
¢þ
>WENV180002707
FLNY01003702
[FLNY] bioreactor metagenome; Moose rumen
16336
16261
-
Arg
TCT
[ENA]
¢þ
>WENV180133963
OATJ01011791
[OATJ] human gut metagenome; faeces
1368
1442
+
Arg
TCT
[ENA]
¢þ
>WENV183723110
PDYJ01000763
[PDYJ] gut metagenome; fecal pellets
263027
263101
+
Arg
TCT
[ENA]
¢þ
>WENV183723348
PDYJ01001530
[PDYJ] gut metagenome; fecal pellets
1249469
1249395
-
Arg
TCT
[ENA]
¢þ
>WENV183723408
PDYJ01001535
[PDYJ] gut metagenome; fecal pellets
128774
128848
+
Arg
TCT
[ENA]
¢þ
>WENV170775439
LXOW01045630
[LXOW] bovine gut metagenome; Cow rumen
154
230
+
Arg
TCT
[ENA]
¢þ
>WENV170776019
LXOW01117152
[LXOW] bovine gut metagenome; Cow rumen
2953
3029
+
Arg
TCT
[ENA]
¢þ
>WENV170776155
LXOW01135153
[LXOW] bovine gut metagenome; Cow rumen
446
372
-
Arg
TCT
[ENA]
¢þ
>WENV170776986
LXOW01233891
[LXOW] bovine gut metagenome; Cow rumen
11922
11998
+
Arg
TCT
[ENA]
¢þ
>WENV170777308
LXOW01266894
[LXOW] bovine gut metagenome; Cow rumen
1395
1321
-
Arg
TCT
[ENA]
¢þ
>WENV170778319
LXOW01386980
[LXOW] bovine gut metagenome; Cow rumen
1
77
+
Arg
TCT
[ENA]
¢þ
>WENV170778417
LXOW01399658
[LXOW] bovine gut metagenome; Cow rumen
296
220
-
Arg
TCT
[ENA]
¢þ
>W1610835190
LPNF01000014
Unclassified
bacterium F083 [LPNF]
29130
29206
+
Arg
TCT
[ENA]
¡û
>W1610946959
LUZN01000055
Bacteroidota
Bacteroidales bacterium Bact_22 [LUZN]
18232
18308
+
Arg
TCT
[ENA]
¡û
>WENV079344
AATB01005626
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
115
39
-
Arg
TCT
[ENA]
>WENV079603
AATF01001669
Gut microbiome of Mouse lean and obese (C57BL/6J)
733
657
-
Arg
TCT
[ENA]
Identical group No.337324 (4 seq.)
>WENV182940385
OKVF01012061
[OKVF] human gut metagenome; human gut
1647
1721
+
Arg
TCT
[ENA]
¢þ
>WENV182949096
OKVP01015152
[OKVP] human gut metagenome; human gut
1002
1076
+
Arg
TCT
[ENA]
¢þ
>WENV079522
AATE01004373
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
464
540
+
Arg
TCT
[ENA]
>WENV079657
AATF01005497
Gut microbiome of Mouse lean and obese (C57BL/6J)
356
280
-
Arg
TCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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