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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Mouse lean and obese (C57BL/6J)
Anticodon = TTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783773 (99 seq.)
>W1711123847
LUJL01000007
Bacteroidota
Bacteroidales bacterium M1 [LUJL]
603
532
-
Gln
TTG
[ENA]
¡û
>W1711123934
LUJN01000032
Bacteroidota
Bacteroidales bacterium M3 [LUJN]
31446
31517
+
Gln
TTG
[ENA]
¡û
>W1711124056
LUJR01000024
Bacteroidota
Bacteroidales bacterium M7 [LUJR]
27693
27766
+
Gln
TTG
[ENA]
¡û
>W1711124097
LUJS01000017
Bacteroidota
Bacteroidales bacterium M8 [LUJS]
57962
57889
-
Gln
TTG
[ENA]
¡û
>W1711124174
LUJU01000002
Bacteroidota
Bacteroidales bacterium M10 [LUJU]
10097
10168
+
Gln
TTG
[ENA]
¡û
>W1711124218
LUJW01000027
Bacteroidota
Bacteroidales bacterium M12 [LUJW]
47923
47852
-
Gln
TTG
[ENA]
¡û
>W1711124241
LUJX01000051
Bacteroidota
Bacteroidales bacterium M13 [LUJX]
635
706
+
Gln
TTG
[ENA]
¡û
>W1711124357
LUKA01000026
Bacteroidota
Bacteroidales bacterium K10 [LUKA]
36610
36683
+
Gln
TTG
[ENA]
¡û
>W1711578081
MNQK01000033
Bacteroidota
Bacteroidales bacterium 52_46 [MNQK]
68675
68746
+
Gln
TTG
[ENA]
¡û
>WENV180301016
OBJE01001171
[OBJE] human gut metagenome; faeces
5481
5552
+
Gln
TTG
[ENA]
¢þ
>WENV180323558
OBKR01043934
[OBKR] human gut metagenome; feces
715
644
-
Gln
TTG
[ENA]
¢þ
>WENV180817384
ODJQ01000520
[ODJQ] human metagenome; G_DNA_Stool
26413
26486
+
Gln
TTG
[ENA]
¢þ
>WENV180957103
ODUK01011388
[ODUK] human metagenome; G_DNA_Stool
123
194
+
Gln
TTG
[ENA]
¢þ
>WENV181000717
ODVV01000654
[ODVV] human metagenome; G_DNA_Stool
5858
5929
+
Gln
TTG
[ENA]
¢þ
>WENV181027193
ODXC01159693
[ODXC] human metagenome; G_DNA_Stool
136
208
+
Gln
TTG
[ENA]
¢þ
>WENV181056741
ODYJ01024817
[ODYJ] human metagenome; G_DNA_Stool
669
740
+
Gln
TTG
[ENA]
¢þ
>WENV181239639
OFFD01002828
[OFFD] mouse gut metagenome; faeces
6393
6322
-
Gln
TTG
[ENA]
¢þ
>WENV181241833
OFFF01008229
[OFFF] mouse gut metagenome; faeces
2991
2920
-
Gln
TTG
[ENA]
¢þ
>WENV181243365
OFFG01072636
[OFFG] mouse gut metagenome; faeces
280
351
+
Gln
TTG
[ENA]
¢þ
>WENV181243778
OFFH01001004
[OFFH] mouse gut metagenome; faeces
8728
8799
+
Gln
TTG
[ENA]
¢þ
>WENV181246167
OFFJ01011858
[OFFJ] mouse gut metagenome; faeces
3296
3225
-
Gln
TTG
[ENA]
¢þ
>WENV181247483
OFFK01036407
[OFFK] mouse gut metagenome; faeces
1153
1224
+
Gln
TTG
[ENA]
¢þ
>WENV181248140
OFFL01000887
[OFFL] mouse gut metagenome; faeces
12642
12571
-
Gln
TTG
[ENA]
¢þ
>WENV181250329
OFFN01003722
[OFFN] mouse gut metagenome; faeces
1927
1856
-
Gln
TTG
[ENA]
¢þ
>WENV181251414
OFFO01007324
[OFFO] mouse gut metagenome; faeces
253
182
-
Gln
TTG
[ENA]
¢þ
>WENV181256360
OFFT01002772
[OFFT] mouse gut metagenome; faeces
1302
1373
+
Gln
TTG
[ENA]
¢þ
>WENV181257186
OFFU01000294
[OFFU] mouse gut metagenome; faeces
21714
21785
+
Gln
TTG
[ENA]
¢þ
>WENV181260241
OFFW01038239
[OFFW] mouse gut metagenome; faeces
288
217
-
Gln
TTG
[ENA]
¢þ
>WENV181263381
OFFZ01001789
[OFFZ] mouse gut metagenome; faeces
7682
7611
-
Gln
TTG
[ENA]
¢þ
>WENV181267395
OFGC01005495
[OFGC] mouse gut metagenome; faeces
2330
2401
+
Gln
TTG
[ENA]
¢þ
>WENV181269031
OFGE01000293
[OFGE] mouse gut metagenome; faeces
29340
29269
-
Gln
TTG
[ENA]
¢þ
>WENV181277335
OFGL01001365
[OFGL] mouse gut metagenome; faeces
11508
11579
+
Gln
TTG
[ENA]
¢þ
>WENV181278711
OFGM01009534
[OFGM] mouse gut metagenome; faeces
2330
2401
+
Gln
TTG
[ENA]
¢þ
>WENV181279338
OFGN01000412
[OFGN] mouse gut metagenome; faeces
41940
42011
+
Gln
TTG
[ENA]
¢þ
>WENV181285264
OFGR01076820
[OFGR] mouse gut metagenome; faeces
259
188
-
Gln
TTG
[ENA]
¢þ
>WENV181290332
OFHA01022562
[OFHA] mouse gut metagenome; faeces
1759
1688
-
Gln
TTG
[ENA]
¢þ
>WENV181299821
OFHM01054224
[OFHM] mouse gut metagenome; faeces
240
169
-
Gln
TTG
[ENA]
¢þ
>WENV181303341
OFHP01007030
[OFHP] mouse gut metagenome; faeces
2736
2807
+
Gln
TTG
[ENA]
¢þ
>WENV181495832
OGGC01006802
[OGGC] metagenome; Human gut stool
1542
1613
+
Gln
TTG
[ENA]
¢þ
>WENV181601680
OGLG01000168
[OGLG] metagenome; Human gut stool
16842
16913
+
Gln
TTG
[ENA]
¢þ
>WENV181632537
OGMT01027599
[OGMT] metagenome; Human gut stool
561
632
+
Gln
TTG
[ENA]
¢þ
>WENV181641565
OGNF01006651
[OGNF] metagenome; Human gut stool
3140
3211
+
Gln
TTG
[ENA]
¢þ
>WENV181703975
OGPJ01053179
[OGPJ] human gut metagenome; faeces
427
356
-
Gln
TTG
[ENA]
¢þ
>WENV181802626
OGSD01000968
[OGSD] human gut metagenome; faeces
15490
15419
-
Gln
TTG
[ENA]
¢þ
>WENV181813099
OGTB01020567
[OGTB] human gut metagenome; faeces
249
178
-
Gln
TTG
[ENA]
¢þ
>WENV181860133
OGWR01000075
[OGWR] human gut metagenome; faeces
10202
10273
+
Gln
TTG
[ENA]
¢þ
>WENV181901343
OGXW01001435
[OGXW] human gut metagenome; faeces
17846
17917
+
Gln
TTG
[ENA]
¢þ
>WENV182017958
OHBW01009689
[OHBW] human gut metagenome; feces
1249
1178
-
Gln
TTG
[ENA]
¢þ
>WENV182040256
OHDH01000106
[OHDH] human gut metagenome; feces
253
182
-
Gln
TTG
[ENA]
¢þ
>WENV182051773
OHEG01008097
[OHEG] human gut metagenome; feces
1093
1164
+
Gln
TTG
[ENA]
¢þ
>WENV182063213
OHEX01000004
[OHEX] human gut metagenome; feces
103383
103454
+
Gln
TTG
[ENA]
¢þ
>WENV182151544
OHLJ01014840
[OHLJ] human gut metagenome; feces
1238
1167
-
Gln
TTG
[ENA]
¢þ
>WENV182155035
OHLQ01000008
[OHLQ] human gut metagenome; feces
103384
103455
+
Gln
TTG
[ENA]
¢þ
>WENV182159631
OHMD01000009
[OHMD] human gut metagenome; feces
71
142
+
Gln
TTG
[ENA]
¢þ
>WENV182182553
OHNR01000048
[OHNR] human gut metagenome; feces
17764
17693
-
Gln
TTG
[ENA]
¢þ
>WENV182213850
OHQH01038101
[OHQH] human gut metagenome; feces
628
557
-
Gln
TTG
[ENA]
¢þ
>WENV182213917
OHQI01000267
[OHQI] human gut metagenome; feces
4993
5064
+
Gln
TTG
[ENA]
¢þ
>WENV182241895
OHSG01003103
[OHSG] human gut metagenome; feces
859
788
-
Gln
TTG
[ENA]
¢þ
>WENV182249717
OHSQ01004623
[OHSQ] human gut metagenome; feces
1353
1282
-
Gln
TTG
[ENA]
¢þ
>WENV182382780
OIDS01033551
[OIDS] human gut metagenome; feces
495
424
-
Gln
TTG
[ENA]
¢þ
>WENV182612970
OJJY01041994
[OJJY] metagenome; faeces
289
360
+
Gln
TTG
[ENA]
¢þ
>WENV182615002
OJKC01000878
[OJKC] metagenome; faeces
10125
10054
-
Gln
TTG
[ENA]
¢þ
>WENV182649408
OJMG01006679
[OJMG] human gut metagenome; feces
4617
4688
+
Gln
TTG
[ENA]
¢þ
>WENV182673705
OJNP01000079
[OJNP] human gut metagenome; human gut
17939
18010
+
Gln
TTG
[ENA]
¢þ
>WENV182677417
OJNR01025068
[OJNR] human gut metagenome; human gut
948
1019
+
Gln
TTG
[ENA]
¢þ
>WENV182680210
OJNU01000092
[OJNU] human gut metagenome; human gut
17939
18010
+
Gln
TTG
[ENA]
¢þ
>WENV182695931
OJOK01000076
[OJOK] human gut metagenome; human gut
63730
63659
-
Gln
TTG
[ENA]
¢þ
>WENV182701574
OJOP01036382
[OJOP] human gut metagenome; human gut
627
556
-
Gln
TTG
[ENA]
¢þ
>WENV182727868
OJPW01000345
[OJPW] human gut metagenome; stool sample
27940
28013
+
Gln
TTG
[ENA]
¢þ
>WENV182735007
OJQF01016103
[OJQF] human gut metagenome; stool sample
84
157
+
Gln
TTG
[ENA]
¢þ
>WENV182878402
OKRZ01000382
[OKRZ] human gut metagenome; faeces
7829
7758
-
Gln
TTG
[ENA]
¢þ
>WENV182942472
OKVH01000902
[OKVH] human gut metagenome; human gut
9538
9467
-
Gln
TTG
[ENA]
¢þ
>WENV183024884
OLFT01001778
[OLFT] human gut metagenome; faeces
10054
9983
-
Gln
TTG
[ENA]
¢þ
>WENV183031251
OLFX01001837
[OLFX] human gut metagenome; faeces
10855
10926
+
Gln
TTG
[ENA]
¢þ
>WENV183115147
OLNQ01004420
[OLNQ] human gut metagenome; faeces
7295
7224
-
Gln
TTG
[ENA]
¢þ
>WENV183164228
OLOX01000016
[OLOX] human gut metagenome; faeces
40880
40951
+
Gln
TTG
[ENA]
¢þ
>WENV183211842
OLQD01000233
[OLQD] human gut metagenome; faeces
10735
10806
+
Gln
TTG
[ENA]
¢þ
>WENV183270952
OLRV01033683
[OLRV] human gut metagenome; faeces
415
344
-
Gln
TTG
[ENA]
¢þ
>WENV183277426
OLSA01000836
[OLSA] human gut metagenome; faeces
6761
6832
+
Gln
TTG
[ENA]
¢þ
>WENV183355067
OLXC01048906
[OLXC] human gut metagenome; feces
359
288
-
Gln
TTG
[ENA]
¢þ
>WENV183381891
OLYK01002760
[OLYK] human gut metagenome; feces
1418
1347
-
Gln
TTG
[ENA]
¢þ
>WENV183462009
OMDV01012925
[OMDV] human gut metagenome; feces
1124
1195
+
Gln
TTG
[ENA]
¢þ
>WENV183462306
OMDW01002467
[OMDW] human gut metagenome; feces
5239
5310
+
Gln
TTG
[ENA]
¢þ
>WENV183530386
OOAA01000887
[OOAA] human gut metagenome; human gut
5934
6005
+
Gln
TTG
[ENA]
¢þ
>WENV183568603
OOCB01004628
[OOCB] human gut metagenome; human gut
5569
5640
+
Gln
TTG
[ENA]
¢þ
>WENV183573576
OOCH01000244
[OOCH] human gut metagenome; human gut
10785
10856
+
Gln
TTG
[ENA]
¢þ
>WENV183633153
OOIG01000090
[OOIG] human gut metagenome; human gut
55407
55336
-
Gln
TTG
[ENA]
¢þ
>WENV170086451
CEAC01008715
[CEAC] gut metagenome; human stools
43586
43515
-
Gln
TTG
[ENA]
¢þ
>C192000038
CP040121
Bacteroidota
Duncaniella sp. B8 [CP040121]
2570051
2569980
-
Gln
TTG
-
¡û
>W1810325210
PUEC01000025
Bacteroidota
Duncaniella muris DSM 103720 [PUEC]
39022
38951
-
Gln
TTG
[ENA]
¡û
>W1610934886
LUJL01000007
Bacteroidota
Bacteroidales bacterium M1 [LUJL]
603
532
-
Gln
TTG
[ENA]
¡û
>W1610934973
LUJN01000032
Bacteroidota
Bacteroidales bacterium M3 [LUJN]
31446
31517
+
Gln
TTG
[ENA]
¡û
>W1610935095
LUJR01000024
Bacteroidota
Bacteroidales bacterium M7 [LUJR]
27693
27766
+
Gln
TTG
[ENA]
¡û
>W1610935136
LUJS01000017
Bacteroidota
Bacteroidales bacterium M8 [LUJS]
57962
57889
-
Gln
TTG
[ENA]
¡û
>W1610935213
LUJU01000002
Bacteroidota
Bacteroidales bacterium M10 [LUJU]
10097
10168
+
Gln
TTG
[ENA]
¡û
>W1610935257
LUJW01000027
Bacteroidota
Bacteroidales bacterium M12 [LUJW]
47923
47852
-
Gln
TTG
[ENA]
¡û
>W1610935280
LUJX01000051
Bacteroidota
Bacteroidales bacterium M13 [LUJX]
635
706
+
Gln
TTG
[ENA]
¡û
>W1610935396
LUKA01000026
Bacteroidota
Bacteroidales bacterium K10 [LUKA]
36610
36683
+
Gln
TTG
[ENA]
¡û
>WENV079574
AATF01000370
Gut microbiome of Mouse lean and obese (C57BL/6J)
2212
2287
+
Gln
TTG
[ENA]
Identical group No.785966 (13 seq.)
>WENV181237881
OFFB01002226
[OFFB] mouse gut metagenome; faeces
3624
3553
-
Gln
TTG
[ENA]
¢þ
>WENV181249278
OFFM01002158
[OFFM] mouse gut metagenome; faeces
3610
3539
-
Gln
TTG
[ENA]
¢þ
>WENV181267397
OFGC01005666
[OFGC] mouse gut metagenome; faeces
4072
4001
-
Gln
TTG
[ENA]
¢þ
>WENV181640786
OGNF01000465
[OGNF] metagenome; Human gut stool
26277
26348
+
Gln
TTG
[ENA]
¢þ
>WENV183303106
OLSQ01000441
[OLSQ] human gut metagenome; faeces
27352
27281
-
Gln
TTG
[ENA]
¢þ
>WENV183774549
PPYF01040069
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1996
2067
+
Gln
TTG
[ENA]
¢þ
>WENV079302
AATB01000008
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
2620
2545
-
Gln
TTG
[ENA]
>WENV079348
AATB01006409
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
505
430
-
Gln
TTG
[ENA]
>WENV079385
AATC01000085
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
704
629
-
Gln
TTG
[ENA]
>WENV079459
AATC01007429
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
716
641
-
Gln
TTG
[ENA]
>WENV079506
AATE01001630
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
248
173
-
Gln
TTG
[ENA]
>WENV079521
AATE01004353
Gut microbiome of Mouse lean and obese (C57BL/6J; sample ob2, leptin genotype ob/ob)
248
323
+
Gln
TTG
[ENA]
>WENV079553
AATF01000024
Gut microbiome of Mouse lean and obese (C57BL/6J)
2253
2328
+
Gln
TTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK