This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified viruses
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.669939 (16 seq.)
>W1710818335
LKPE01000004
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
19987
19916
-
Pseudo
CAT
[ENA]
¡û
>W1711738627
MUBH01000008
Bacillota
Lactococcus lactis subsp. lactis [MUBH]
28316
28387
+
Pseudo
CAT
[ENA]
¡û
>C171110740
CP020604
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis FM03 [CP020604]
1704854
1704783
-
Met
CAT
-
¡û
>W141171161
AXZK01000070
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis str. LD61 [AXZK]
14926
14855
-
Pseudo
CAT
[ENA]
¡û
>PHG181004758
LT985575
unclassified viruses
Bacteriophage sp. (LT985575)
10606
10535
-
Met
CAT
[ENA]
¡û
>PHG181004759
LT985576
unclassified viruses
Bacteriophage sp. (LT985576)
22202
22273
+
Met
CAT
[ENA]
¡û
>PHG181004763
LT993225
unclassified viruses
Bacteriophage sp. (LT993225)
14684
14613
-
Met
CAT
[ENA]
¡û
>PHG181004764
LT996074
unclassified viruses
Bacteriophage sp. (LT996074)
14684
14613
-
Met
CAT
[ENA]
¡û
>PHG181004766
LT996081
unclassified viruses
Bacteriophage sp. (LT996081)
3759
3688
-
Met
CAT
[ENA]
¡û
>W1911503421
OESF01000041
Bacillota
Lactococcus lactis [OESF]
15891
15820
-
Met
CAT
[ENA]
¡û
>W1911503519
OESH01000056
Bacillota
Lactococcus lactis [OESH]
788
859
+
Met
CAT
[ENA]
¡û
>W1911503571
OESI01000022
Bacillota
Lactococcus lactis [OESI]
19918
19847
-
Met
CAT
[ENA]
¡û
>W1911503660
OESK01000013
Bacillota
Lactococcus lactis [OESK]
15791
15720
-
Met
CAT
[ENA]
¡û
>W1911534464
OLMC01000040
Bacillota
Lactococcus lactis subsp. lactis CF112 [OLMC]
18272
18201
-
Met
CAT
[ENA]
¡û
>W1911534533
OLME01000044
Bacillota
Lactococcus lactis subsp. lactis CF111 [OLME]
2882
2953
+
Met
CAT
[ENA]
¡û
>W1610682742
LKPE01000004
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
19987
19916
-
Pseudo
CAT
[ENA]
¡û
Identical group No.685130 (11 seq.)
>WENV180182190
OAWO01001425
[OAWO] human gut metagenome; faeces
6311
6240
-
Met
CAT
[ENA]
¢þ
>WENV180192129
OAXJ01002511
[OAXJ] human gut metagenome; faeces
3896
3967
+
Met
CAT
[ENA]
¢þ
>WENV180306875
OBJP01019753
[OBJP] human gut metagenome; human gut
594
523
-
Met
CAT
[ENA]
¢þ
>WENV183231084
OLQT01026419
[OLQT] human gut metagenome; faeces
1088
1159
+
Met
CAT
[ENA]
¢þ
>WENV183428394
OMBN01030023
[OMBN] human gut metagenome; feces
114
185
+
Met
CAT
[ENA]
¢þ
>WENV183429392
OMBO01019200
[OMBO] human gut metagenome; feces
280
209
-
Met
CAT
[ENA]
¢þ
>PHG181002590
KX160207
Siphoviridae
Lactococcus phage 53801 (KX160207)
13752
13823
+
Met
CAT
[ENA]
¡û
>PHG181002591
KX160208
Siphoviridae
Lactococcus phage 53802 (KX160208)
15054
15125
+
Met
CAT
[ENA]
¡û
>PHG181004765
LT996078
unclassified viruses
Bacteriophage sp. (LT996078)
23448
23377
-
Met
CAT
[ENA]
¡û
>W1910871090
NCWV01000050
Bacillota
Lactococcus lactis OG2 [NCWV]
2116
2187
+
Met
CAT
[ENA]
¡û
>W1910871471
NCXC01000049
Bacillota
Lactococcus lactis KR [NCXC]
627
556
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK