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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = GTA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122562 (5 seq.)
>PHG181001865
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
89926
90010
+
Tyr
GTA
[ENA]
¡û
>PHG181001882
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
89926
90010
+
Tyr
GTA
[ENA]
¡û
>PHG181001899
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
90192
90276
+
Tyr
GTA
[ENA]
¡û
>PHG14102297
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
90192
90276
+
Tyr
GTA
[ENA]
¡û
>PHG14102344
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
89926
90010
+
Tyr
GTA
[ENA]
¡û
Identical group No.168952 (1 seq.)
>PHG181007530
MG983743
Podoviridae
Xanthomonas phage RiverRider (MG983743)
57721
57636
-
Tyr
GTA
[ENA]
¡û
Identical group No.172861 (1 seq.)
>PHG181007588
MH015256
Podoviridae
Ruegeria phage vB_RpoP-V13 (MH015256)
14645
14730
+
Tyr
GTA
[ENA]
¡û
Identical group No.220142 (3 seq.)
>WENV181190748
OEPS010002196
[OEPS] soil metagenome; soil
5221
5138
-
Tyr
GTA
[ENA]
¢þ
>PHG14102026
KC139517
Podoviridae
Salmonella phage FSL SP-058 TN106 (KC139517)
66870
66953
+
Tyr
GTA
[ENA]
¡û
>PHG14102035
KC139520
Podoviridae
Salmonella phage FSL SP-076 TN106 (KC139520)
61739
61822
+
Tyr
GTA
[ENA]
¡û
Identical group No.232725 (2 seq.)
>PHG181002538
KX098390
Podoviridae
Erwinia phage vB_EamP_Rexella (KX098390)
41796
41877
+
Tyr
GTA
[ENA]
¡û
>PHG14102645
KF806588
Podoviridae
Erwinia phage Ea9-2 (KF806588)
41504
41585
+
Tyr
GTA
[ENA]
¡û
Identical group No.232863 (2 seq.)
>PHG181002531
KX098389
Podoviridae
Erwinia phage vB_EamP_Frozen (KX098389)
41446
41527
+
Tyr
GTA
[ENA]
¡û
>PHG181002544
KX098391
Podoviridae
Erwinia phage vB_EamP_Gutmeister (KX098391)
37469
37550
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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