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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Ackermannviridae
Anticodon = GTT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.335750 (1 seq.)
>PHG183000747
LC121084
Ackermannviridae
Ralstonia phage RSP15 (LC121084)
91515
91439
-
Asn
GTT
[ENA]
¡û
Identical group No.504460 (4 seq.)
>PHG181002610
KX245012
Ackermannviridae
Salmonella phage GG32 (KX245012)
19529
19604
+
Asn
GTT
[ENA]
¡û
>PHG181003728
KY000003
Ackermannviridae
Salmonella phage STP07 (KY000003)
3826
3901
+
Asn
GTT
[ENA]
¡û
>PHG181006756
MG383452
Ackermannviridae
Escherichia phage FEC14 (MG383452)
154869
154794
-
Asn
GTT
[ENA]
¡û
>PHG14102781
KJ174317
Ackermannviridae
Salmonella phage vB_SalM_SJ2 VD13 (KJ174317)
96816
96741
-
Asn
GTT
[ENA]
¡û
Identical group No.504496 (1 seq.)
>PHG181008357
MH517022
Ackermannviridae
Acinetobacter phage SH-Ab 15599 (MH517022)
83532
83607
+
Asn
GTT
[ENA]
¡û
Identical group No.506667 (7 seq.)
>PHG181002596
KX171211
Ackermannviridae
Salmonella phage vB_SenM-2 (KX171211)
133376
133301
-
Asn
GTT
[ENA]
¡û
>PHG181004839
MF001362
Ackermannviridae
Salmonella phage SP1 (MF001362)
131878
131953
+
Asn
GTT
[ENA]
¡û
>PHG14100145
FQ312032
Ackermannviridae
Salmonella virus ViI phi 2 (FQ312032)
137626
137701
+
Asn
GTT
[ENA]
¡û
>PHG14101042
JN126049
Ackermannviridae
Salmonella phage Sh19 Shauna1 (JN126049)
137806
137881
+
Asn
GTT
[ENA]
¡û
>PHG14101225
JN673056
Ackermannviridae
Escherichia phage PhaxI G (JN673056)
136693
136768
+
Asn
GTT
[ENA]
¡û
>PHG14101796
JX128257
Ackermannviridae
Escherichia phage ECML-4 Lu11 (JX128257)
76468
76393
-
Asn
GTT
[ENA]
¡û
>PHG14101874
JX181828
Ackermannviridae
Salmonella phage STML-13-1 STML-198 (JX181828)
112793
112868
+
Asn
GTT
[ENA]
¡û
Identical group No.523517 (3 seq.)
>PHG181004246
KY630163
Ackermannviridae
Salmonella phage S8 (KY630163)
98680
98605
-
Asn
GTT
[ENA]
¡û
>PHG181004386
KY787213
Ackermannviridae
Salmonella phage BSP101 (KY787213)
44777
44702
-
Asn
GTT
[ENA]
¡û
>PHG181006782
MG428992
Ackermannviridae
Salmonella phage Mutine (MG428992)
22399
22324
-
Asn
GTT
[ENA]
¡û
Identical group No.536355 (10 seq.)
>WENV170560361
CYGL01000829
[CYGL] human gut metagenome;
5407
5332
-
Asn
GTT
[ENA]
¢þ
>PHG181001006
KP797973
Ackermannviridae
Salmonella phage Det7 (KP797973)
132902
132827
-
Asn
GTT
[ENA]
¡û
>PHG181001288
KR296692
Ackermannviridae
Salmonella phage 38 (KR296692)
19030
18955
-
Asn
GTT
[ENA]
¡û
>PHG181003324
KX438380
Ackermannviridae
Salmonella phage vB-SalM-PM10 (KX438380)
102153
102228
+
Asn
GTT
[ENA]
¡û
>PHG181004519
LC373201
Ackermannviridae
Enterobacter phage EspM4VN (LC373201)
57672
57597
-
Asn
GTT
[ENA]
¡û
>PHG181008079
MH370368
Ackermannviridae
Salmonella phage S115 (MH370368)
138666
138741
+
Asn
GTT
[ENA]
¡û
>PHG181008106
MH370370
Ackermannviridae
Salmonella phage S117 (MH370370)
137869
137944
+
Asn
GTT
[ENA]
¡û
>PHG14100091
FJ373894
Ackermannviridae
Shigella phage Ag3 wBol1b (FJ373894)
138197
138272
+
Asn
GTT
[ENA]
¡û
>PHG14100583
HQ259103
Ackermannviridae
Salmonella phage SFP10 ENT47670 (HQ259103)
137939
138014
+
Asn
GTT
[ENA]
¡û
>PHG14102784
KJ174318
Ackermannviridae
Salmonella phage vB_SalM_SJ3 VD13 (KJ174318)
82794
82719
-
Asn
GTT
[ENA]
¡û
Identical group No.537845 (1 seq.)
>PHG14101880
JX181829
Ackermannviridae
Salmonella phage SKML-39 (JX181829)
145843
145768
-
Asn
GTT
[ENA]
¡û
Identical group No.561461 (2 seq.)
>PHG181007198
MG748547
Ackermannviridae
Escherichia phage EP75 (MG748547)
116472
116397
-
Asn
GTT
[ENA]
¡û
>PHG181008110
MH370371
Ackermannviridae
Salmonella phage S118 (MH370371)
137508
137583
+
Asn
GTT
[ENA]
¡û
Identical group No.562762 (1 seq.)
>PHG14101175
JN593240
Ackermannviridae
Escherichia virus CBA120 vB_EcoM_CBA120 (JN593240)
137294
137369
+
Asn
GTT
[ENA]
¡û
Identical group No.572065 (2 seq.)
>PHG181002584
KX147096
Ackermannviridae
Serratia phage vB-Sru-IME250 (KX147096)
66741
66666
-
Asn
GTT
[ENA]
¡û
>PHG181003773
KY073123
Ackermannviridae
Serratia phage vB-Sru-IME250 (KY073123)
66741
66666
-
Asn
GTT
[ENA]
¡û
Identical group No.593517 (3 seq.)
>PHG181006773
MG428990
Ackermannviridae
Klebsiella phage Menlow (MG428990)
20486
20411
-
Asn
GTT
[ENA]
¡û
>PHG181007280
MG770379
Ackermannviridae
Klebsiella virus vB_KpnM_KpS110 (MG770379)
74279
74204
-
Asn
GTT
[ENA]
¡û
>PHG14103149
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
3621
3696
+
Asn
GTT
[ENA]
¡û
Identical group No.627256 (1 seq.)
>PHG181006778
MG428991
Ackermannviridae
Klebsiella phage May (MG428991)
20041
19966
-
Asn
GTT
[ENA]
¡û
Identical group No.628088 (2 seq.)
>WENV180311796
OBJT01581566
[OBJT] soil metagenome; soil
211
136
-
Asn
GTT
[ENA]
¢þ
>PHG14100011
AB797215
Ackermannviridae
Klebsiella phage 0507-KN2-1 (AB797215)
84467
84392
-
Asn
GTT
[ENA]
¡û
Identical group No.672101 (4 seq.)
>PHG14102044
KC139523
Myoviridae
Salmonella phage FSL SP-063 TN106 (KC139523)
3803
3877
+
Asn
GTT
[ENA]
¡û
>PHG14102078
KC139564
Myoviridae
Salmonella phage FSL SP-029 TN106 (KC139564)
3793
3867
+
Asn
GTT
[ENA]
¡û
>PHG14102626
KF669653
Ackermannviridae
Salmonella phage Marshall PM6 (KF669653)
22014
21940
-
Asn
GTT
[ENA]
¡û
>PHG14102630
KF669654
Ackermannviridae
Salmonella phage Maynard PM6 (KF669654)
20381
20307
-
Asn
GTT
[ENA]
¡û
Identical group No.725987 (1 seq.)
>PHG181004436
KY914485
Ackermannviridae
Aeromonas phage phiA8-29 (KY914485)
78809
78735
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK