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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = TTG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.438755 (1 seq.)
>PHG181007402
MG922974
Podoviridae
Klebsiella phage KP8 (MG922974)
34829
34905
+
Gln
TTG
[ENA]
¡û
Identical group No.504409 (5 seq.)
>PHG181001853
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
87495
87568
+
Gln
TTG
[ENA]
¡û
>PHG181001870
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
87495
87568
+
Gln
TTG
[ENA]
¡û
>PHG181001887
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
87948
88021
+
Gln
TTG
[ENA]
¡û
>PHG14102284
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
87948
88021
+
Gln
TTG
[ENA]
¡û
>PHG14102331
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
87495
87568
+
Gln
TTG
[ENA]
¡û
Identical group No.550957 (1 seq.)
>PHG14100634
HQ317387
Podoviridae
Sulfitobacter phage phiCB2047-B (HQ317387)
69511
69436
-
Gln
TTG
[ENA]
¡û
Identical group No.596114 (1 seq.)
>PHG0100472
DQ535032
Podoviridae
Lactococcus virus KSY1 CRC266 (DQ535032)
77160
77232
+
Gln
TTG
[ENA]
¡û
Identical group No.725995 (1 seq.)
>PHG181007533
MG983743
Podoviridae
Xanthomonas phage RiverRider (MG983743)
56895
56821
-
Gln
TTG
[ENA]
¡û
Identical group No.734101 (2 seq.)
>PHG14102308
KC821612
Podoviridae
Cellulophaga phage phi40:1 (KC821612)
38339
38411
+
Gln
TTG
[ENA]
¡û
>PHG14102321
KC821614
Podoviridae
Cellulophaga phage phi38:1 (KC821614)
38343
38415
+
Gln
TTG
[ENA]
¡û
Identical group No.744261 (1 seq.)
>PHG181006914
MG592626
Podoviridae
Vibrio phage 1.262.O._10N.286.51.A9 (MG592626)
1006
1080
+
Gln
TTG
[ENA]
¡û
Identical group No.744262 (1 seq.)
>PHG181007589
MH015256
Podoviridae
Ruegeria phage vB_RpoP-V13 (MH015256)
14733
14807
+
Gln
TTG
[ENA]
¡û
Identical group No.775004 (1 seq.)
>PHG181004003
KY549659
Podoviridae
Pectobacterium phage vB_PatP_CB4 (KY549659)
70661
70735
+
Gln
TTG
[ENA]
¡û
Identical group No.775014 (1 seq.)
>PHG181006919
MG592660
Podoviridae
Vibrio phage 1.293.O._10N.261.52.E1 (MG592660)
1389
1463
+
Gln
TTG
[ENA]
¡û
Identical group No.792392 (3 seq.)
>WENV170005130
AKYZ01002381
[AKYZ] insect gut metagenome;
182
255
+
Gln
TTG
[ENA]
¢þ
>WENV170005159
AKZA01001883
[AKZA] insect gut metagenome;
37903
37976
+
Gln
TTG
[ENA]
¢þ
>PHG181007396
MG873442
Podoviridae
Salmonella phage SE131 (MG873442)
88238
88165
-
Gln
TTG
[ENA]
¡û
Identical group No.806153 (1 seq.)
>PHG14100564
HM997019
Podoviridae
Salmonella phage 7-11 beta4 (HM997019)
2620
2693
+
Gln
TTG
[ENA]
¡û
Identical group No.818431 (1 seq.)
>PHG14100175
FR719956
Podoviridae
Roseovarius Plymouth podovirus 1 phi 2 (FR719956)
71248
71321
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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