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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273386 (82 seq.)
>W1710822435
LKUW01000052
Betaproteobacteria
Paracidovorax citrulli [LKUW]
204630
204554
-
Met
CAT
[ENA]
¡û
>W1710870492
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
948476
948552
+
Met
CAT
[ENA]
¡û
>W1710873406
LMMT01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
502987
503063
+
Met
CAT
[ENA]
¡û
>W1710873520
LMMV01000022
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
223894
223818
-
Met
CAT
[ENA]
¡û
>W1710873725
LMNA01000002
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
184766
184842
+
Met
CAT
[ENA]
¡û
>W1711172962
LWCN01000004
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
2507518
2507594
+
Met
CAT
[ENA]
¡û
>W1711409750
MGPC01000035
Betaproteobacteria
Curvibacter sp. GWA2_64_110 [MGPC]
11438
11514
+
Met
CAT
[ENA]
¡û
>W1711575544
MNIU01000001
Betaproteobacteria
Delftia sp. 13_1_20CM_4_67_18 [MNIU]
42029
42105
+
Met
CAT
[ENA]
¡û
>W1711680548
MRWK01000787
Betaproteobacteria
Comamonadaceae bacterium BIN2 [MRWK]
1174
1250
+
Met
CAT
[ENA]
¡û
>W1711751413
MUNS01000041
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
438155
438079
-
Met
CAT
[ENA]
¡û
>W1711853551
MYFL01000003
Betaproteobacteria
Delftia sp. K82 [MYFL]
1022782
1022706
-
Met
CAT
[ENA]
¡û
>W131045656
AMRP01000294
Betaproteobacteria
Paracidovorax citrulli ZJU1106 [AMRP]
1333
1257
-
Met
CAT
[ENA]
¡û
>W131171409
ARGE01000035
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
75122
75046
-
Met
CAT
[ENA]
¡û
>W131178419
ARLO01000067
Betaproteobacteria
Curvibacter lanceolatus ATCC 14669 [ARLO]
115158
115234
+
Met
CAT
[ENA]
¡û
>W131226948
AUET01000011
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
376389
376465
+
Met
CAT
[ENA]
¡û
>W131229596
AUGX01000023
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
45270
45194
-
Met
CAT
[ENA]
¡û
>C000098
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
953378
953454
+
Met
CAT
[Ensembl]
¡û
>C018627
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
1702020
1701944
-
Met
CAT
[Ensembl]
¡û
>w020802
AAVD01000002
Betaproteobacteria
Delftia acidovorans SPH-1 [AAVD]
405437
405513
+
Met
CAT
[ENA]
¡û
>C171072944
CP018101
Betaproteobacteria
Delftia sp. HK171 [CP018101]
1720896
1720820
-
Met
CAT
-
¡û
>C171089941
CP019171
Betaproteobacteria
Delftia acidovorans [CP019171]
1753427
1753351
-
Met
CAT
-
¡û
>C171091643
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
4704383
4704459
+
Met
CAT
-
¡û
>WENV180019583
FTCD01000211
[FTCD] metagenome; soil
3364
3288
-
Met
CAT
[ENA]
¢þ
>w008227
AAJK01000019
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
13440
13516
+
Met
CAT
[ENA]
¡û
>WENV180267131
OBEQ011819097
[OBEQ] groundwater metagenome; groundwater
555
479
-
Met
CAT
[ENA]
¢þ
>WENV180694848
OCZS012750251
[OCZS] soil metagenome; soil
99
175
+
Met
CAT
[ENA]
¢þ
>WENV181172388
OEIV010645008
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
97
173
+
Met
CAT
[ENA]
¢þ
>WENV181381874
OFRF01020625
[OFRF] wastewater metagenome; Exp Tend CN 50WW
734
658
-
Met
CAT
[ENA]
¢þ
>WENV181401311
OFSF01117441
[OFSF] wastewater metagenome; Exp Tend VB 100WW
94
18
-
Met
CAT
[ENA]
¢þ
>C08004070
CP000884
Betaproteobacteria
Delftia acidovorans SPH-1 [CP000884]
1716400
1716327
-
Met
CAT
[Ensembl]
¡û
>W141276658
JADZ01000002
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
20311
20387
+
Met
CAT
[ENA]
¡û
>WENV183710742
PDWI01052674
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
590
514
-
Met
CAT
[ENA]
¢þ
>WENV170556290
CXWL01006701
[CXWL] groundwater metagenome; biofilm material
13020
13096
+
Met
CAT
[ENA]
¢þ
>WENV170609364
FUWD011382941
[FUWD] metagenome; unknown
243
319
+
Met
CAT
[ENA]
¢þ
>W141484637
JFYT01000086
Betaproteobacteria
Delftia sp. RIT313 [JFYT]
13502
13578
+
Met
CAT
[ENA]
¡û
>C181088978
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
3599667
3599591
-
Met
CAT
-
¡û
>C191063769
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
2840310
2840386
+
Met
CAT
-
¡û
>W141701610
JMKU01000002
Betaproteobacteria
Paracidovorax oryzae ATCC 19882 [JMKU]
253794
253870
+
Met
CAT
[ENA]
¡û
>W141789919
JOUB01000005
Betaproteobacteria
Delftia acidovorans [JOUB]
998713
998637
-
Met
CAT
[ENA]
¡û
>W09106070
AASX01000002
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
397700
397624
-
Met
CAT
[ENA]
¡û
>W1910744104
MHZY01000127
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
234
158
-
Met
CAT
[ENA]
¡û
>W1910888691
NESA01000002
Betaproteobacteria
Limnohabitans sp. JirII-31 [NESA]
250918
250842
-
Met
CAT
[ENA]
¡û
>W1910888728
NESB01000002
Betaproteobacteria
Limnohabitans sp. JirII-29 [NESB]
479161
479085
-
Met
CAT
[ENA]
¡û
>W1911494371
OBKE01007141
Unclassified
bacterium [OBKE]
370
446
+
Met
CAT
[ENA]
¡û
>W1911497657
OCRO01000001
Betaproteobacteria
Delftia acidovorans ATCC 11299b [OCRO]
4580382
4580458
+
Met
CAT
[ENA]
¡û
>W1810071674
PEEW01000001
Betaproteobacteria
Burkholderiales bacterium 23 [PEEW]
5391959
5392035
+
Met
CAT
[ENA]
¡û
>W1810072151
PEFD01000001
Betaproteobacteria
Delftia sp. 60 [PEFD]
1739563
1739487
-
Met
CAT
[ENA]
¡û
>W1810078549
PEKB02000177
Betaproteobacteria
Delftia acidovorans B15 [PEKB]
16352
16428
+
Met
CAT
[ENA]
¡û
>SRA1004289
SRR002328.251807
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
82
158
+
Met
CAT
[SRA]
>SRA1006219
SRR016610.313319
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
138
62
-
Met
CAT
[SRA]
>W1810573130
QEKN01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5684 [QEKN]
3286647
3286723
+
Met
CAT
[ENA]
¡û
>W1810672037
QJTC01000025
Betaproteobacteria
Xylophilus ampelinus CECT 7646 [QJTC]
5448
5372
-
Met
CAT
[ENA]
¡û
>W1810696116
QLTA01000003
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
154185
154261
+
Met
CAT
[ENA]
¡û
>W1810759426
QPJK01000002
Betaproteobacteria
Pseudorhodoferax soli DSM 21634 [QPJK]
590048
589972
-
Met
CAT
[ENA]
¡û
>W1810759940
QPJU01000010
Betaproteobacteria
Extensimonas vulgaris DSM 100911 [QPJU]
6630
6554
-
Met
CAT
[ENA]
¡û
>W1810885139
QUNC01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5596 [QUNC]
3600456
3600380
-
Met
CAT
[ENA]
¡û
>W10110544
ADCB01000004
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
19537
19613
+
Met
CAT
[ENA]
¡û
>C11100127
CP002521
Betaproteobacteria
Paracidovorax avenae ATCC 19860 [CP002521]
891080
891156
+
Met
CAT
[Ensembl]
¡û
>C11106993
CP002735
Betaproteobacteria
Delftia sp. Cs1-4 [CP002735]
5625623
5625699
+
Met
CAT
[Ensembl]
¡û
>W11112981
ADCB01000004
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
19537
19613
+
Met
CAT
[ENA]
¡û
>W1510766094
JANU01000042
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
139440
139516
+
Met
CAT
[ENA]
¡û
>C11118983
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
3657410
3657486
+
Met
CAT
[Ensembl]
¡û
>W1511503081
JXDJ01000025
Betaproteobacteria
Paracidovorax citrulli tw6 [JXDJ]
416247
416323
+
Met
CAT
[ENA]
¡û
>W1511527434
JYHM01000021
Betaproteobacteria
Paracidovorax citrulli pslbtw65 [JYHM]
305753
305677
-
Met
CAT
[ENA]
¡û
>W11170777
AFPT01000120
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
1888
1812
-
Met
CAT
[ENA]
¡û
>W1610074339
BCWP01000001
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
62592
62516
-
Met
CAT
[ENA]
¡û
>W1610077621
BCZP01000008
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
37903
37827
-
Met
CAT
[ENA]
¡û
>W1610599184
LFJT01000015
Betaproteobacteria
Delftia sp. JD2 [LFJT]
112723
112647
-
Met
CAT
[ENA]
¡û
>W1610686300
LKUW01000052
Betaproteobacteria
Paracidovorax citrulli [LKUW]
204630
204554
-
Met
CAT
[ENA]
¡û
>W1610732838
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
948476
948552
+
Met
CAT
[ENA]
¡û
>W1610735752
LMMT01000012
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
502987
503063
+
Met
CAT
[ENA]
¡û
>W1610735866
LMMV01000022
Betaproteobacteria
Pseudorhodoferax sp. Leaf267 [LMMV]
223894
223818
-
Met
CAT
[ENA]
¡û
>W1610736071
LMNA01000002
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
184766
184842
+
Met
CAT
[ENA]
¡û
>W1610981567
LWCN01000004
Betaproteobacteria
Delftia sp. GW456-R20 [LWCN]
2507518
2507594
+
Met
CAT
[ENA]
¡û
>W1710071457
BCWP01000001
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
62592
62516
-
Met
CAT
[ENA]
¡û
>W1710075259
BCZP01000008
Betaproteobacteria
Delftia acidovorans NBRC 14950 [BCZP]
37903
37827
-
Met
CAT
[ENA]
¡û
>W1710512057
FMZC01000003
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
408630
408554
-
Met
CAT
[ENA]
¡û
>W1710519703
FNEY01000002
Betaproteobacteria
Paracidovorax citrulli [FNEY]
149696
149772
+
Met
CAT
[ENA]
¡û
>W1710525315
FNJL01000020
Betaproteobacteria
Paracidovorax cattleyae [FNJL]
103175
103251
+
Met
CAT
[ENA]
¡û
>W1710547358
FOCW01000001
Betaproteobacteria
Brachymonas denitrificans DSM 15123 [FOCW]
299794
299870
+
Met
CAT
[ENA]
¡û
>W1710559444
FOMQ01000007
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
85022
84946
-
Met
CAT
[ENA]
¡û
>W1710720542
LFJT01000015
Betaproteobacteria
Delftia sp. JD2 [LFJT]
112723
112647
-
Met
CAT
[ENA]
¡û
Identical group No.538063 (1 seq.)
>SRA1006213
SRR016610.294728
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
102
27
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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