Home | tRNADB-CE : tRNA gene database curated manually by experts

This is the navigation skips to jump to main contents

Jump to main contents.

Top | Keyword | BLAST | Download | HOW TO USE

tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001803)

Anticodon = CCT

HIT: 47 Group(s).

Download Sequence	Representative sequence of each cluster
View ClustalW result

Sort by Identical group No.

Sort by the number of tRNAs in the Identical group

Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision
Identical group No.236495 (5 seq.)
	>WENV183797238	PVBE010317937	[PVBE] marine metagenome; water		720	799	+	Arg	CCT	[ENA]	◯
	>WENV170612770	FUWD012684880	[FUWD] metagenome; unknown		78	1	-	Arg	CCT	[ENA]	◯
	>WENV170879394	MDTC01093954	[MDTC] marine metagenome; seawater		4483	4562	+	Arg	CCT	[ENA]	◯
	>SRA1018360	SRR035082.279477	454 Sequencing (SRP001803)		63	138	+	Arg	CCT	[SRA]
	>SRA1048995	SRR035094.307096	454 Sequencing (SRP001815)		139	60	-	Arg	CCT	[SRA]
Identical group No.240135 (1 seq.)
	>SRA1017848	SRR035082.206146	454 Sequencing (SRP001803)		263	185	-	Arg	CCT	[SRA]
Identical group No.268467 (1 seq.)
	>SRA1019377	SRR035082.444662	454 Sequencing (SRP001803)		118	41	-	Arg	CCT	[SRA]
Identical group No.272388 (8 seq.)
	>WENV170616123	FUWD012878456	[FUWD] metagenome; unknown		100	24	-	Arg	CCT	[ENA]	◯
	>WENV170617305	FUWD012921235	[FUWD] metagenome; unknown		322	398	+	Arg	CCT	[ENA]	◯
	>WENV170624234	FUWD013178211	[FUWD] metagenome; unknown		708	632	-	Arg	CCT	[ENA]	◯
	>WENV170632516	FUWD013383794	[FUWD] metagenome; unknown		708	632	-	Arg	CCT	[ENA]	◯
	>SRA1018995	SRR035082.383558	454 Sequencing (SRP001803)		100	24	-	Arg	CCT	[SRA]
	>SRA1019597	SRR035082.484761	454 Sequencing (SRP001803)		462	386	-	Arg	CCT	[SRA]
	>SRA1026312	SRR035085.184232	454 Sequencing (SRP001806)		332	408	+	Arg	CCT	[SRA]
	>SRA1035576	SRR035089.334157	454 Sequencing (SRP001810)		185	109	-	Arg	CCT	[SRA]
Identical group No.272700 (5 seq.)
	>WENV170608045	FUWD010886560	[FUWD] metagenome; unknown		234	310	+	Arg	CCT	[ENA]	◯
	>SRA1017774	SRR035082.194583	454 Sequencing (SRP001803)		107	31	-	Arg	CCT	[SRA]
	>SRA1018196	SRR035082.254563	454 Sequencing (SRP001803)		12	88	+	Arg	CCT	[SRA]
	>SRA1035206	SRR035089.261418	454 Sequencing (SRP001810)		147	223	+	Arg	CCT	[SRA]
	>SRA1042537	SRR035091.404442	454 Sequencing (SRP001812)		254	330	+	Arg	CCT	[SRA]
Identical group No.300276 (5 seq.)
	>WENV170611943	FUWD012463630	[FUWD] metagenome; unknown		99	22	-	Arg	CCT	[ENA]	◯
	>SRA1017947	SRR035082.218637	454 Sequencing (SRP001803)		326	249	-	Arg	CCT	[SRA]
	>SRA1028783	SRR035087.3431	454 Sequencing (SRP001808)		288	211	-	Arg	CCT	[SRA]
	>SRA1028965	SRR035087.48214	454 Sequencing (SRP001808)		154	78	-	Arg	CCT	[SRA]
	>SRA1030136	SRR035087.232199	454 Sequencing (SRP001808)		154	78	-	Arg	CCT	[SRA]
Identical group No.357782 (3 seq.)
	>WENV170605004	FUWD010441051	[FUWD] metagenome; unknown		187	263	+	Arg	CCT	[ENA]	◯
	>SRA1019078	SRR035082.398249	454 Sequencing (SRP001803)		150	226	+	Arg	CCT	[SRA]
	>SRA1043258	SRR035092.84011	454 Sequencing (SRP001813)		387	311	-	Arg	CCT	[SRA]
Identical group No.358270 (3 seq.)
	>WENV170611474	FUWD012326016	[FUWD] metagenome; unknown		179	103	-	Arg	CCT	[ENA]	◯
	>SRA1016760	SRR035082.20608	454 Sequencing (SRP001803)		320	244	-	Arg	CCT	[SRA]
	>SRA1043853	SRR035092.186017	454 Sequencing (SRP001813)		202	278	+	Arg	CCT	[SRA]
Identical group No.358620 (3 seq.)
	>WENV170619420	FUWD013013927	[FUWD] metagenome; unknown		293	369	+	Arg	CCT	[ENA]	◯
	>SRA1018165	SRR035082.250314	454 Sequencing (SRP001803)		83	159	+	Arg	CCT	[SRA]
	>SRA1049603	SRR035095.103313	454 Sequencing (SRP001816)		113	37	-	Arg	CCT	[SRA]
Identical group No.358782 (4 seq.)
	>WENV170622801	FUWD013121323	[FUWD] metagenome; unknown		895	819	-	Arg	CCT	[ENA]	◯
	>WENV170631015	FUWD013335060	[FUWD] metagenome; unknown		534	610	+	Arg	CCT	[ENA]	◯
	>SRA1018432	SRR035082.290510	454 Sequencing (SRP001803)		310	234	-	Arg	CCT	[SRA]
	>SRA1044763	SRR035092.336491	454 Sequencing (SRP001813)		185	109	-	Arg	CCT	[SRA]
Identical group No.439717 (1 seq.)
	>SRA1017653	SRR035082.175684	454 Sequencing (SRP001803)		369	443	+	Arg	CCT	[SRA]
Identical group No.439749 (1 seq.)
	>SRA1017991	SRR035082.225292	454 Sequencing (SRP001803)		127	51	-	Arg	CCT	[SRA]
Identical group No.439789 (1 seq.)
	>SRA1018396	SRR035082.284196	454 Sequencing (SRP001803)		183	110	-	Arg	CCT	[SRA]
Identical group No.439827 (1 seq.)
	>SRA1018671	SRR035082.330985	454 Sequencing (SRP001803)		256	329	+	Arg	CCT	[SRA]
Identical group No.439845 (1 seq.)
	>SRA1018890	SRR035082.364131	454 Sequencing (SRP001803)		420	344	-	Arg	CCT	[SRA]
Identical group No.439858 (1 seq.)
	>SRA1019087	SRR035082.399590	454 Sequencing (SRP001803)		95	171	+	Arg	CCT	[SRA]
Identical group No.439901 (1 seq.)
	>SRA1019525	SRR035082.470875	454 Sequencing (SRP001803)		159	234	+	Arg	CCT	[SRA]
Identical group No.439934 (1 seq.)
	>SRA1019828	SRR035082.539002	454 Sequencing (SRP001803)		346	270	-	Arg	CCT	[SRA]
Identical group No.453575 (5 seq.)
	>WENV170620562	FUWD013033996	[FUWD] metagenome; unknown		714	642	-	Arg	CCT	[ENA]	◯
	>WENV170628704	FUWD013251402	[FUWD] metagenome; unknown		714	642	-	Arg	CCT	[ENA]	◯
	>SRA1019563	SRR035082.476609	454 Sequencing (SRP001803)		195	123	-	Arg	CCT	[SRA]
	>SRA1034720	SRR035089.160047	454 Sequencing (SRP001810)		153	225	+	Arg	CCT	[SRA]
	>SRA1035054	SRR035089.227387	454 Sequencing (SRP001810)		279	207	-	Arg	CCT	[SRA]
Identical group No.484337 (9 seq.)
	>WENV170622510	FUWD013107458	[FUWD] metagenome; unknown		256	181	-	Arg	CCT	[ENA]	◯
	>WENV170630735	FUWD013321778	[FUWD] metagenome; unknown		256	181	-	Arg	CCT	[ENA]	◯
	>SRA1018046	SRR035082.231401	454 Sequencing (SRP001803)		242	167	-	Arg	CCT	[SRA]
	>SRA1018175	SRR035082.251552	454 Sequencing (SRP001803)		476	401	-	Arg	CCT	[SRA]
	>SRA1030680	SRR035087.312485	454 Sequencing (SRP001808)		473	548	+	Arg	CCT	[SRA]
	>SRA1043086	SRR035092.42338	454 Sequencing (SRP001813)		291	366	+	Arg	CCT	[SRA]
	>SRA1043396	SRR035092.107418	454 Sequencing (SRP001813)		261	336	+	Arg	CCT	[SRA]
	>SRA1054820	SRR035099.222588	454 Sequencing (SRP001820)		251	176	-	Arg	CCT	[SRA]
	>SRA1054857	SRR035099.236072	454 Sequencing (SRP001820)		251	176	-	Arg	CCT	[SRA]
Identical group No.484339 (5 seq.)
	>WENV170604957	FUWD010437897	[FUWD] metagenome; unknown		497	424	-	Arg	CCT	[ENA]	◯
	>SRA1016715	SRR035082.11385	454 Sequencing (SRP001803)		427	354	-	Arg	CCT	[SRA]
	>SRA1017091	SRR035082.79450	454 Sequencing (SRP001803)		166	239	+	Arg	CCT	[SRA]
	>SRA1017237	SRR035082.104418	454 Sequencing (SRP001803)		167	240	+	Arg	CCT	[SRA]
	>SRA1030736	SRR035087.322577	454 Sequencing (SRP001808)		309	236	-	Arg	CCT	[SRA]
Identical group No.484644 (18 seq.)
	>WENV183629945	OOGR01000826	[OOGR] marine metagenome; seawater		460	535	+	Arg	CCT	[ENA]	◯
	>WENV170572981	FLOH01002039	[FLOH] marine metagenome; water		3299	3374	+	Arg	CCT	[ENA]	◯
	>WENV170599105	FUWD010062999	[FUWD] metagenome; unknown		447	522	+	Arg	CCT	[ENA]	◯
	>WENV170601973	FUWD010205756	[FUWD] metagenome; unknown		534	459	-	Arg	CCT	[ENA]	◯
	>WENV170614907	FUWD012844118	[FUWD] metagenome; unknown		435	510	+	Arg	CCT	[ENA]	◯
	>WENV170614908	FUWD012844119	[FUWD] metagenome; unknown		135	210	+	Arg	CCT	[ENA]	◯
	>WENV170619907	FUWD013022717	[FUWD] metagenome; unknown		402	475	+	Arg	CCT	[ENA]	◯
	>WENV170626789	FUWD013229490	[FUWD] metagenome; unknown		7535	7610	+	Arg	CCT	[ENA]	◯
	>WENV170627505	FUWD013232971	[FUWD] metagenome; unknown		2892	2967	+	Arg	CCT	[ENA]	◯
	>WENV170630584	FUWD013314421	[FUWD] metagenome; unknown		13881	13954	+	Arg	CCT	[ENA]	◯
	>SRA1018885	SRR035082.363237	454 Sequencing (SRP001803)		331	256	-	Arg	CCT	[SRA]
	>SRA1023272	SRR035084.58950	454 Sequencing (SRP001805)		415	340	-	Arg	CCT	[SRA]
	>SRA1023953	SRR035084.214952	454 Sequencing (SRP001805)		195	270	+	Arg	CCT	[SRA]
	>SRA1044582	SRR035092.305542	454 Sequencing (SRP001813)		216	143	-	Arg	CCT	[SRA]
	>SRA1045863	SRR035093.183451	454 Sequencing (SRP001814)		46	119	+	Arg	CCT	[SRA]
	>SRA1046339	SRR035093.283220	454 Sequencing (SRP001814)		128	53	-	Arg	CCT	[SRA]
	>SRA1046694	SRR035093.363893	454 Sequencing (SRP001814)		399	474	+	Arg	CCT	[SRA]
	>SRA1047199	SRR035093.480859	454 Sequencing (SRP001814)		200	125	-	Arg	CCT	[SRA]
Identical group No.547964 (2 seq.)
	>WENV170607707	FUWD010850603	[FUWD] metagenome; unknown		1	74	+	Arg	CCT	[ENA]	◯
	>SRA1018718	SRR035082.337187	454 Sequencing (SRP001803)		1	74	+	Arg	CCT	[SRA]
Identical group No.548925 (7 seq.)
	>WENV170625549	FUWD013200123	[FUWD] metagenome; unknown		1548	1475	-	Arg	CCT	[ENA]	◯
	>WENV170633776	FUWD013402441	[FUWD] metagenome; unknown		1548	1475	-	Arg	CCT	[ENA]	◯
	>SRA1018470	SRR035082.296031	454 Sequencing (SRP001803)		187	114	-	Arg	CCT	[SRA]
	>SRA1032814	SRR035088.107908	454 Sequencing (SRP001809)		364	437	+	Arg	CCT	[SRA]
	>SRA1039996	SRR035091.13273	454 Sequencing (SRP001812)		520	447	-	Arg	CCT	[SRA]
	>SRA1041626	SRR035091.270584	454 Sequencing (SRP001812)		165	238	+	Arg	CCT	[SRA]
	>SRA1042705	SRR035091.433473	454 Sequencing (SRP001812)		73	146	+	Arg	CCT	[SRA]
Identical group No.639970 (1 seq.)
	>SRA1017121	SRR035082.84363	454 Sequencing (SRP001803)		118	45	-	Arg	CCT	[SRA]
Identical group No.639972 (1 seq.)
	>SRA1017156	SRR035082.90007	454 Sequencing (SRP001803)		3	78	+	Arg	CCT	[SRA]
Identical group No.654315 (4 seq.)
	>WENV170620123	FUWD013026221	[FUWD] metagenome; unknown		2414	2488	+	Arg	CCT	[ENA]	◯
	>WENV170628256	FUWD013244073	[FUWD] metagenome; unknown		10922	10848	-	Arg	CCT	[ENA]	◯
	>SRA1019527	SRR035082.471496	454 Sequencing (SRP001803)		264	338	+	Arg	CCT	[SRA]
	>SRA1026077	SRR035085.138988	454 Sequencing (SRP001806)		311	237	-	Arg	CCT	[SRA]
Identical group No.654414 (9 seq.)
	>WENV170608212	FUWD010902775	[FUWD] metagenome; unknown		431	359	-	Arg	CCT	[ENA]	◯
	>SRA1017661	SRR035082.176980	454 Sequencing (SRP001803)		70	142	+	Arg	CCT	[SRA]
	>SRA1018710	SRR035082.335918	454 Sequencing (SRP001803)		390	316	-	Arg	CCT	[SRA]
	>SRA1034164	SRR035089.6829	454 Sequencing (SRP001810)		187	113	-	Arg	CCT	[SRA]
	>SRA1048285	SRR035094.139102	454 Sequencing (SRP001815)		245	173	-	Arg	CCT	[SRA]
	>SRA1049547	SRR035095.94504	454 Sequencing (SRP001816)		165	93	-	Arg	CCT	[SRA]
	>SRA1049806	SRR035095.141230	454 Sequencing (SRP001816)		165	93	-	Arg	CCT	[SRA]
	>SRA1049856	SRR035095.148393	454 Sequencing (SRP001816)		165	93	-	Arg	CCT	[SRA]
	>SRA1049901	SRR035095.157073	454 Sequencing (SRP001816)		29	103	+	Arg	CCT	[SRA]
Identical group No.710506 (4 seq.)
	>WENV170600689	FUWD010138174	[FUWD] metagenome; unknown		401	327	-	Arg	CCT	[ENA]	◯
	>WENV170626969	FUWD013230564	[FUWD] metagenome; unknown		974	900	-	Arg	CCT	[ENA]	◯
	>SRA1019084	SRR035082.399022	454 Sequencing (SRP001803)		159	233	+	Arg	CCT	[SRA]
	>SRA1019676	SRR035082.500014	454 Sequencing (SRP001803)		134	208	+	Arg	CCT	[SRA]
Identical group No.710534 (3 seq.)
	>WENV170601743	FUWD010191354	[FUWD] metagenome; unknown		264	338	+	Arg	CCT	[ENA]	◯
	>SRA1017794	SRR035082.197352	454 Sequencing (SRP001803)		338	264	-	Arg	CCT	[SRA]
	>SRA1043936	SRR035092.197978	454 Sequencing (SRP001813)		168	94	-	Arg	CCT	[SRA]
Identical group No.711034 (4 seq.)
	>WENV170611666	FUWD012369692	[FUWD] metagenome; unknown		103	29	-	Arg	CCT	[ENA]	◯
	>SRA1019192	SRR035082.416267	454 Sequencing (SRP001803)		103	29	-	Arg	CCT	[SRA]
	>SRA1049219	SRR035095.39791	454 Sequencing (SRP001816)		62	136	+	Arg	CCT	[SRA]
	>SRA1049427	SRR035095.76333	454 Sequencing (SRP001816)		62	136	+	Arg	CCT	[SRA]
Identical group No.711192 (4 seq.)
	>WENV170613314	FUWD012794998	[FUWD] metagenome; unknown		374	446	+	Arg	CCT	[ENA]	◯
	>SRA1018241	SRR035082.260383	454 Sequencing (SRP001803)		177	249	+	Arg	CCT	[SRA]
	>SRA1018805	SRR035082.350053	454 Sequencing (SRP001803)		155	227	+	Arg	CCT	[SRA]
	>SRA1019812	SRR035082.535923	454 Sequencing (SRP001803)		138	66	-	Arg	CCT	[SRA]
Identical group No.711215 (2 seq.)
	>WENV170613504	FUWD012809470	[FUWD] metagenome; unknown		276	202	-	Arg	CCT	[ENA]	◯
	>SRA1018743	SRR035082.341526	454 Sequencing (SRP001803)		185	259	+	Arg	CCT	[SRA]
Identical group No.711445 (3 seq.)
	>WENV170623286	FUWD013144730	[FUWD] metagenome; unknown		1357	1431	+	Arg	CCT	[ENA]	◯
	>WENV170631545	FUWD013356728	[FUWD] metagenome; unknown		1357	1431	+	Arg	CCT	[ENA]	◯
	>SRA1017365	SRR035082.126315	454 Sequencing (SRP001803)		221	147	-	Arg	CCT	[SRA]
Identical group No.711447 (3 seq.)
	>WENV170623335	FUWD013145939	[FUWD] metagenome; unknown		1023	1094	+	Arg	CCT	[ENA]	◯
	>WENV170631598	FUWD013357880	[FUWD] metagenome; unknown		1023	1094	+	Arg	CCT	[ENA]	◯
	>SRA1019682	SRR035082.501933	454 Sequencing (SRP001803)		176	247	+	Arg	CCT	[SRA]
Identical group No.771154 (1 seq.)
	>SRA1017573	SRR035082.162690	454 Sequencing (SRP001803)		321	249	-	Arg	CCT	[SRA]
Identical group No.771170 (1 seq.)
	>SRA1017752	SRR035082.191506	454 Sequencing (SRP001803)		230	302	+	Arg	CCT	[SRA]
Identical group No.771200 (1 seq.)
	>SRA1018101	SRR035082.240538	454 Sequencing (SRP001803)		160	87	-	Arg	CCT	[SRA]
Identical group No.771206 (1 seq.)
	>SRA1018142	SRR035082.245445	454 Sequencing (SRP001803)		101	175	+	Arg	CCT	[SRA]
Identical group No.771239 (1 seq.)
	>SRA1018442	SRR035082.292025	454 Sequencing (SRP001803)		195	121	-	Arg	CCT	[SRA]
Identical group No.771240 (1 seq.)
	>SRA1018448	SRR035082.293221	454 Sequencing (SRP001803)		190	261	+	Arg	CCT	[SRA]
Identical group No.771281 (1 seq.)
	>SRA1018895	SRR035082.365796	454 Sequencing (SRP001803)		144	70	-	Arg	CCT	[SRA]
Identical group No.771284 (1 seq.)
	>SRA1018939	SRR035082.373114	454 Sequencing (SRP001803)		27	98	+	Arg	CCT	[SRA]
Identical group No.771288 (1 seq.)
	>SRA1018984	SRR035082.382302	454 Sequencing (SRP001803)		455	384	-	Arg	CCT	[SRA]
Identical group No.771367 (1 seq.)
	>SRA1017378	SRR035082.130077	454 Sequencing (SRP001803)		85	13	-	Arg	CCT	[SRA]
Identical group No.833589 (1 seq.)
	>SRA1018906	SRR035082.367907	454 Sequencing (SRP001803)		407	335	-	Arg	CCT	[SRA]
Identical group No.833640 (1 seq.)
	>SRA1019829	SRR035082.539264	454 Sequencing (SRP001803)		270	199	-	Arg	CCT	[SRA]
Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision

Download Sequence	Representative sequence of each cluster
View ClustalW result

BACK