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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = CCA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269426 (1 seq.)
>SRA1021508
SRR035083.267424
454 Sequencing (SRP001804)
279
202
-
Trp
CCA
[SRA]
Identical group No.272542 (6 seq.)
>WENV170606168
FUWD010626202
[FUWD] metagenome; unknown
145
221
+
Trp
CCA
[ENA]
¢þ
>SRA1020013
SRR035083.41338
454 Sequencing (SRP001804)
376
300
-
Trp
CCA
[SRA]
>SRA1034019
SRR035088.448547
454 Sequencing (SRP001809)
167
245
+
Trp
CCA
[SRA]
>SRA1034356
SRR035089.65607
454 Sequencing (SRP001810)
65
141
+
Trp
CCA
[SRA]
>SRA1034541
SRR035089.117879
454 Sequencing (SRP001810)
65
141
+
Trp
CCA
[SRA]
>SRA1034905
SRR035089.194615
454 Sequencing (SRP001810)
65
141
+
Trp
CCA
[SRA]
Identical group No.358299 (3 seq.)
>WENV170611746
FUWD012387228
[FUWD] metagenome; unknown
264
338
+
Trp
CCA
[ENA]
¢þ
>SRA1021569
SRR035083.274286
454 Sequencing (SRP001804)
403
477
+
Trp
CCA
[SRA]
>SRA1022011
SRR035083.338781
454 Sequencing (SRP001804)
206
280
+
Trp
CCA
[SRA]
Identical group No.446046 (1 seq.)
>SRA1022257
SRR035083.376803
454 Sequencing (SRP001804)
68
142
+
Trp
CCA
[SRA]
Identical group No.453381 (116 seq.)
>C171049444
CP016432
Chlorobi
Prosthecochloris sp. CIB 2401 (CP016432)
263657
263732
+
Trp
CCA
-
¡û
>C171113992
CP020873
Chlorobi
Prosthecochloris sp. HL-130-GSB (CP020873)
266430
266505
+
Trp
CCA
-
¡û
>C005290
CP000108
Chlorobi
Chlorobium chlorochromatii CaD3
399570
399642
+
Trp
CCA
[Ensembl]
¡û
>C007007
AE006470
Chlorobi
Chlorobium tepidum TLS
152295
152367
+
Trp
CCA
[Ensembl]
¡û
>C018259
CP000607
Chlorobi
Prosthecochloris vibrioformis DSM 265
1795356
1795284
-
Trp
CCA
[Ensembl]
¡û
>C08003632
CP001101
Chlorobi
Chlorobium phaeobacteroides BS1
311913
311986
+
Trp
CCA
[Ensembl]
¡û
>C08003799
CP001100
Chlorobi
Chloroherpeton thalassium ATCC 35110
1378771
1378846
+
Trp
CCA
[Ensembl]
¡û
>WENV183812095
PYLN01000002
[PYLN] freshwater metagenome; meromictic lake
30363
30290
-
Trp
CCA
[ENA]
¢þ
>WENV170613995
FUWD012823312
[FUWD] metagenome; unknown
14797
14870
+
Trp
CCA
[ENA]
¢þ
>W09103350
AAJD01000003
Chlorobi
Prosthecochloris vibrioformis DSM 265 [AAJD]
204607
204680
+
Trp
CCA
[ENA]
¡û
>C181068768
CP022571
Chlorobi
Prosthecochloris sp. GSB1 TY Vent (CP022571)
290858
290932
+
Trp
CCA
-
¡û
>W1810062243
PDNY01000026
Chlorobi
Prosthecochloris sp. ZM_2 (PDNY)
16155
16081
-
Trp
CCA
[ENA]
¡û
>W1810062263
PDNZ01000003
Chlorobi
Prosthecochloris sp. V1 (PDNZ)
227091
227017
-
Trp
CCA
[ENA]
¡û
>SRA1019901
SRR035083.18257
454 Sequencing (SRP001804)
401
328
-
Trp
CCA
[SRA]
>SRA1019989
SRR035083.37632
454 Sequencing (SRP001804)
198
125
-
Trp
CCA
[SRA]
>SRA1020186
SRR035083.69195
454 Sequencing (SRP001804)
148
221
+
Trp
CCA
[SRA]
>SRA1020206
SRR035083.74260
454 Sequencing (SRP001804)
477
404
-
Trp
CCA
[SRA]
>SRA1020234
SRR035083.79255
454 Sequencing (SRP001804)
412
339
-
Trp
CCA
[SRA]
>SRA1020269
SRR035083.86654
454 Sequencing (SRP001804)
157
230
+
Trp
CCA
[SRA]
>SRA1020306
SRR035083.94829
454 Sequencing (SRP001804)
478
405
-
Trp
CCA
[SRA]
>SRA1020348
SRR035083.100449
454 Sequencing (SRP001804)
8
81
+
Trp
CCA
[SRA]
>SRA1020402
SRR035083.109098
454 Sequencing (SRP001804)
316
243
-
Trp
CCA
[SRA]
>SRA1020472
SRR035083.119812
454 Sequencing (SRP001804)
255
182
-
Trp
CCA
[SRA]
>SRA1020483
SRR035083.121430
454 Sequencing (SRP001804)
50
123
+
Trp
CCA
[SRA]
>SRA1020539
SRR035083.131710
454 Sequencing (SRP001804)
479
406
-
Trp
CCA
[SRA]
>SRA1020739
SRR035083.157853
454 Sequencing (SRP001804)
68
141
+
Trp
CCA
[SRA]
>SRA1020771
SRR035083.162038
454 Sequencing (SRP001804)
239
312
+
Trp
CCA
[SRA]
>SRA1020909
SRR035083.183524
454 Sequencing (SRP001804)
499
426
-
Trp
CCA
[SRA]
>SRA1021399
SRR035083.254628
454 Sequencing (SRP001804)
115
188
+
Trp
CCA
[SRA]
>SRA1021422
SRR035083.256520
454 Sequencing (SRP001804)
56
129
+
Trp
CCA
[SRA]
>SRA1021441
SRR035083.258961
454 Sequencing (SRP001804)
9
82
+
Trp
CCA
[SRA]
>SRA1021487
SRR035083.265069
454 Sequencing (SRP001804)
9
82
+
Trp
CCA
[SRA]
>SRA1021566
SRR035083.273563
454 Sequencing (SRP001804)
499
426
-
Trp
CCA
[SRA]
>SRA1021578
SRR035083.275398
454 Sequencing (SRP001804)
222
295
+
Trp
CCA
[SRA]
>SRA1021610
SRR035083.281207
454 Sequencing (SRP001804)
144
71
-
Trp
CCA
[SRA]
>SRA1021653
SRR035083.287571
454 Sequencing (SRP001804)
124
197
+
Trp
CCA
[SRA]
>SRA1021658
SRR035083.288284
454 Sequencing (SRP001804)
14
87
+
Trp
CCA
[SRA]
>SRA1021679
SRR035083.292102
454 Sequencing (SRP001804)
80
7
-
Trp
CCA
[SRA]
>SRA1021915
SRR035083.327311
454 Sequencing (SRP001804)
373
300
-
Trp
CCA
[SRA]
>SRA1022009
SRR035083.338538
454 Sequencing (SRP001804)
68
141
+
Trp
CCA
[SRA]
>SRA1022084
SRR035083.349908
454 Sequencing (SRP001804)
68
141
+
Trp
CCA
[SRA]
>SRA1022122
SRR035083.355920
454 Sequencing (SRP001804)
490
417
-
Trp
CCA
[SRA]
>SRA1022214
SRR035083.368908
454 Sequencing (SRP001804)
124
197
+
Trp
CCA
[SRA]
>SRA1022397
SRR035083.400044
454 Sequencing (SRP001804)
68
141
+
Trp
CCA
[SRA]
>SRA1022430
SRR035083.404610
454 Sequencing (SRP001804)
68
141
+
Trp
CCA
[SRA]
>SRA1022542
SRR035083.422239
454 Sequencing (SRP001804)
399
326
-
Trp
CCA
[SRA]
>SRA1022608
SRR035083.431677
454 Sequencing (SRP001804)
252
179
-
Trp
CCA
[SRA]
>SRA1022616
SRR035083.433429
454 Sequencing (SRP001804)
145
72
-
Trp
CCA
[SRA]
>SRA1022634
SRR035083.435571
454 Sequencing (SRP001804)
40
113
+
Trp
CCA
[SRA]
>SRA1022664
SRR035083.439134
454 Sequencing (SRP001804)
377
304
-
Trp
CCA
[SRA]
>SRA1022711
SRR035083.445671
454 Sequencing (SRP001804)
72
145
+
Trp
CCA
[SRA]
>SRA1022787
SRR035083.459930
454 Sequencing (SRP001804)
195
122
-
Trp
CCA
[SRA]
>SRA1022815
SRR035083.466520
454 Sequencing (SRP001804)
206
133
-
Trp
CCA
[SRA]
>SRA1022931
SRR035083.489875
454 Sequencing (SRP001804)
195
122
-
Trp
CCA
[SRA]
>SRA1022940
SRR035083.492144
454 Sequencing (SRP001804)
80
153
+
Trp
CCA
[SRA]
>SRA1022960
SRR035083.494824
454 Sequencing (SRP001804)
68
141
+
Trp
CCA
[SRA]
>SRA1023000
SRR035083.502828
454 Sequencing (SRP001804)
33
106
+
Trp
CCA
[SRA]
>SRA1023080
SRR035083.516646
454 Sequencing (SRP001804)
139
212
+
Trp
CCA
[SRA]
>SRA1026322
SRR035085.185260
454 Sequencing (SRP001806)
137
64
-
Trp
CCA
[SRA]
>SRA1029076
SRR035087.69287
454 Sequencing (SRP001808)
339
412
+
Trp
CCA
[SRA]
>SRA1029253
SRR035087.98062
454 Sequencing (SRP001808)
289
362
+
Trp
CCA
[SRA]
>SRA1029372
SRR035087.118276
454 Sequencing (SRP001808)
366
293
-
Trp
CCA
[SRA]
>SRA1032605
SRR035088.61014
454 Sequencing (SRP001809)
341
268
-
Trp
CCA
[SRA]
>SRA1032627
SRR035088.66700
454 Sequencing (SRP001809)
263
336
+
Trp
CCA
[SRA]
>SRA1033140
SRR035088.181604
454 Sequencing (SRP001809)
368
295
-
Trp
CCA
[SRA]
>SRA1033381
SRR035088.240934
454 Sequencing (SRP001809)
81
154
+
Trp
CCA
[SRA]
>SRA1035619
SRR035089.341578
454 Sequencing (SRP001810)
399
326
-
Trp
CCA
[SRA]
>SRA1035944
SRR035089.411123
454 Sequencing (SRP001810)
53
126
+
Trp
CCA
[SRA]
>SRA1036592
SRR035089.556216
454 Sequencing (SRP001810)
291
218
-
Trp
CCA
[SRA]
>SRA1036819
SRR035090.13946
454 Sequencing (SRP001811)
344
271
-
Trp
CCA
[SRA]
>SRA1036832
SRR035090.20056
454 Sequencing (SRP001811)
370
297
-
Trp
CCA
[SRA]
>SRA1036878
SRR035090.30685
454 Sequencing (SRP001811)
221
294
+
Trp
CCA
[SRA]
>SRA1037031
SRR035090.61850
454 Sequencing (SRP001811)
27
100
+
Trp
CCA
[SRA]
>SRA1037068
SRR035090.69197
454 Sequencing (SRP001811)
219
292
+
Trp
CCA
[SRA]
>SRA1037166
SRR035090.87096
454 Sequencing (SRP001811)
83
156
+
Trp
CCA
[SRA]
>SRA1037198
SRR035090.92065
454 Sequencing (SRP001811)
303
230
-
Trp
CCA
[SRA]
>SRA1037202
SRR035090.92308
454 Sequencing (SRP001811)
216
289
+
Trp
CCA
[SRA]
>SRA1037282
SRR035090.106811
454 Sequencing (SRP001811)
63
136
+
Trp
CCA
[SRA]
>SRA1037490
SRR035090.142272
454 Sequencing (SRP001811)
84
157
+
Trp
CCA
[SRA]
>SRA1037529
SRR035090.147682
454 Sequencing (SRP001811)
319
246
-
Trp
CCA
[SRA]
>SRA1037618
SRR035090.163946
454 Sequencing (SRP001811)
155
228
+
Trp
CCA
[SRA]
>SRA1037697
SRR035090.175626
454 Sequencing (SRP001811)
274
201
-
Trp
CCA
[SRA]
>SRA1037699
SRR035090.175882
454 Sequencing (SRP001811)
299
226
-
Trp
CCA
[SRA]
>SRA1037926
SRR035090.219539
454 Sequencing (SRP001811)
17
90
+
Trp
CCA
[SRA]
>SRA1038177
SRR035090.258800
454 Sequencing (SRP001811)
299
226
-
Trp
CCA
[SRA]
>SRA1038437
SRR035090.305016
454 Sequencing (SRP001811)
200
127
-
Trp
CCA
[SRA]
>SRA1038445
SRR035090.305700
454 Sequencing (SRP001811)
233
306
+
Trp
CCA
[SRA]
>SRA1038703
SRR035090.352109
454 Sequencing (SRP001811)
299
226
-
Trp
CCA
[SRA]
>SRA1038870
SRR035090.384988
454 Sequencing (SRP001811)
143
216
+
Trp
CCA
[SRA]
>SRA1038907
SRR035090.391889
454 Sequencing (SRP001811)
191
264
+
Trp
CCA
[SRA]
>SRA1038966
SRR035090.401855
454 Sequencing (SRP001811)
467
394
-
Trp
CCA
[SRA]
>SRA1039074
SRR035090.419604
454 Sequencing (SRP001811)
233
306
+
Trp
CCA
[SRA]
>SRA1039096
SRR035090.423555
454 Sequencing (SRP001811)
109
182
+
Trp
CCA
[SRA]
>SRA1039382
SRR035090.480843
454 Sequencing (SRP001811)
326
253
-
Trp
CCA
[SRA]
>SRA1039558
SRR035090.516045
454 Sequencing (SRP001811)
135
208
+
Trp
CCA
[SRA]
>SRA1039682
SRR035090.543338
454 Sequencing (SRP001811)
136
209
+
Trp
CCA
[SRA]
>SRA1039685
SRR035090.544349
454 Sequencing (SRP001811)
135
208
+
Trp
CCA
[SRA]
>SRA1039815
SRR035090.576203
454 Sequencing (SRP001811)
135
208
+
Trp
CCA
[SRA]
>SRA1039858
SRR035090.584963
454 Sequencing (SRP001811)
1
74
+
Trp
CCA
[SRA]
>SRA1039922
SRR035090.602769
454 Sequencing (SRP001811)
147
220
+
Trp
CCA
[SRA]
>SRA1046203
SRR035093.253138
454 Sequencing (SRP001814)
344
417
+
Trp
CCA
[SRA]
>SRA1047312
SRR035093.507441
454 Sequencing (SRP001814)
266
193
-
Trp
CCA
[SRA]
>SRA1054034
SRR035099.38386
454 Sequencing (SRP001820)
215
142
-
Trp
CCA
[SRA]
>SRA1054177
SRR035099.76427
454 Sequencing (SRP001820)
166
93
-
Trp
CCA
[SRA]
>SRA1054220
SRR035099.86314
454 Sequencing (SRP001820)
73
146
+
Trp
CCA
[SRA]
>SRA1054254
SRR035099.93040
454 Sequencing (SRP001820)
73
146
+
Trp
CCA
[SRA]
>SRA1054308
SRR035099.103664
454 Sequencing (SRP001820)
417
490
+
Trp
CCA
[SRA]
>SRA1054360
SRR035099.115116
454 Sequencing (SRP001820)
364
437
+
Trp
CCA
[SRA]
>SRA1054530
SRR035099.156388
454 Sequencing (SRP001820)
172
245
+
Trp
CCA
[SRA]
>SRA1054549
SRR035099.159830
454 Sequencing (SRP001820)
313
240
-
Trp
CCA
[SRA]
>SRA1054593
SRR035099.169747
454 Sequencing (SRP001820)
156
83
-
Trp
CCA
[SRA]
>SRA1054653
SRR035099.181905
454 Sequencing (SRP001820)
113
40
-
Trp
CCA
[SRA]
>SRA1054660
SRR035099.182850
454 Sequencing (SRP001820)
216
143
-
Trp
CCA
[SRA]
>SRA1054686
SRR035099.188520
454 Sequencing (SRP001820)
364
437
+
Trp
CCA
[SRA]
>SRA1054748
SRR035099.205446
454 Sequencing (SRP001820)
326
253
-
Trp
CCA
[SRA]
>SRA1054846
SRR035099.228704
454 Sequencing (SRP001820)
88
15
-
Trp
CCA
[SRA]
Identical group No.647159 (1 seq.)
>SRA1020245
SRR035083.82164
454 Sequencing (SRP001804)
307
233
-
Trp
CCA
[SRA]
Identical group No.647173 (1 seq.)
>SRA1020844
SRR035083.172476
454 Sequencing (SRP001804)
9
84
+
Trp
CCA
[SRA]
Identical group No.727201 (3 seq.)
>SRA1023044
SRR035083.511702
454 Sequencing (SRP001804)
418
493
+
Trp
CCA
[SRA]
>SRA1038393
SRR035090.296626
454 Sequencing (SRP001811)
426
501
+
Trp
CCA
[SRA]
>SRA1041894
SRR035091.311571
454 Sequencing (SRP001812)
341
416
+
Trp
CCA
[SRA]
Identical group No.751645 (3 seq.)
>SRA1020044
SRR035083.46700
454 Sequencing (SRP001804)
144
216
+
Trp
CCA
[SRA]
>SRA1037099
SRR035090.73413
454 Sequencing (SRP001811)
2
74
+
Trp
CCA
[SRA]
>SRA1038155
SRR035090.255300
454 Sequencing (SRP001811)
117
189
+
Trp
CCA
[SRA]
Identical group No.775581 (1 seq.)
>SRA1020880
SRR035083.177862
454 Sequencing (SRP001804)
293
367
+
Trp
CCA
[SRA]
Identical group No.775591 (1 seq.)
>SRA1021583
SRR035083.276461
454 Sequencing (SRP001804)
183
109
-
Trp
CCA
[SRA]
Identical group No.794112 (5 seq.)
>WENV170603310
FUWD010300059
[FUWD] metagenome; unknown
706
633
-
Trp
CCA
[ENA]
¢þ
>SRA1022898
SRR035083.481458
454 Sequencing (SRP001804)
140
67
-
Trp
CCA
[SRA]
>SRA1039990
SRR035091.10950
454 Sequencing (SRP001812)
111
38
-
Trp
CCA
[SRA]
>SRA1054721
SRR035099.195408
454 Sequencing (SRP001820)
44
117
+
Trp
CCA
[SRA]
>SRA1054814
SRR035099.220564
454 Sequencing (SRP001820)
44
117
+
Trp
CCA
[SRA]
Identical group No.835485 (1 seq.)
>SRA1020240
SRR035083.80110
454 Sequencing (SRP001804)
250
322
+
Trp
CCA
[SRA]
Identical group No.835490 (1 seq.)
>SRA1021988
SRR035083.334931
454 Sequencing (SRP001804)
243
173
-
Trp
CCA
[SRA]
Identical group No.835495 (3 seq.)
>SRA1022539
SRR035083.422155
454 Sequencing (SRP001804)
322
252
-
Trp
CCA
[SRA]
>SRA1022830
SRR035083.468459
454 Sequencing (SRP001804)
323
253
-
Trp
CCA
[SRA]
>SRA1023048
SRR035083.511912
454 Sequencing (SRP001804)
320
250
-
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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