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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = CCT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240381 (1 seq.)
>SRA1020340
SRR035083.99115
454 Sequencing (SRP001804)
344
421
+
Arg
CCT
[SRA]
Identical group No.240382 (1 seq.)
>SRA1022699
SRR035083.443599
454 Sequencing (SRP001804)
85
8
-
Arg
CCT
[SRA]
Identical group No.254212 (4 seq.)
>WENV170620544
FUWD013033555
[FUWD] metagenome; unknown
5288
5213
-
Arg
CCT
[ENA]
¢þ
>WENV170628687
FUWD013250980
[FUWD] metagenome; unknown
5288
5213
-
Arg
CCT
[ENA]
¢þ
>SRA1020878
SRR035083.177394
454 Sequencing (SRP001804)
444
369
-
Arg
CCT
[SRA]
>SRA1044274
SRR035092.251669
454 Sequencing (SRP001813)
297
372
+
Arg
CCT
[SRA]
Identical group No.269419 (2 seq.)
>SRA1020954
SRR035083.190085
454 Sequencing (SRP001804)
4
80
+
Arg
CCT
[SRA]
>SRA1021054
SRR035083.204233
454 Sequencing (SRP001804)
4
80
+
Arg
CCT
[SRA]
Identical group No.269424 (1 seq.)
>SRA1021234
SRR035083.227414
454 Sequencing (SRP001804)
183
258
+
Arg
CCT
[SRA]
Identical group No.269425 (1 seq.)
>SRA1021415
SRR035083.255770
454 Sequencing (SRP001804)
209
284
+
Arg
CCT
[SRA]
Identical group No.358298 (3 seq.)
>WENV170611744
FUWD012387224
[FUWD] metagenome; unknown
296
220
-
Arg
CCT
[ENA]
¢þ
>SRA1021510
SRR035083.267549
454 Sequencing (SRP001804)
294
218
-
Arg
CCT
[SRA]
>SRA1021567
SRR035083.274163
454 Sequencing (SRP001804)
295
219
-
Arg
CCT
[SRA]
Identical group No.358331 (2 seq.)
>WENV170612285
FUWD012564004
[FUWD] metagenome; unknown
113
189
+
Arg
CCT
[ENA]
¢þ
>SRA1021318
SRR035083.241741
454 Sequencing (SRP001804)
113
189
+
Arg
CCT
[SRA]
Identical group No.445988 (1 seq.)
>SRA1019913
SRR035083.19886
454 Sequencing (SRP001804)
182
109
-
Arg
CCT
[SRA]
Identical group No.445990 (1 seq.)
>SRA1019965
SRR035083.30976
454 Sequencing (SRP001804)
260
333
+
Arg
CCT
[SRA]
Identical group No.446008 (1 seq.)
>SRA1020990
SRR035083.194031
454 Sequencing (SRP001804)
126
50
-
Arg
CCT
[SRA]
Identical group No.446065 (1 seq.)
>SRA1022998
SRR035083.502624
454 Sequencing (SRP001804)
277
201
-
Arg
CCT
[SRA]
Identical group No.453609 (126 seq.)
>WENV170613991
FUWD012823312
[FUWD] metagenome; unknown
726
801
+
Arg
CCT
[ENA]
¢þ
>SRA1019864
SRR035083.7847
454 Sequencing (SRP001804)
389
314
-
Arg
CCT
[SRA]
>SRA1020052
SRR035083.49057
454 Sequencing (SRP001804)
267
192
-
Arg
CCT
[SRA]
>SRA1020054
SRR035083.49329
454 Sequencing (SRP001804)
226
151
-
Arg
CCT
[SRA]
>SRA1020064
SRR035083.52251
454 Sequencing (SRP001804)
170
95
-
Arg
CCT
[SRA]
>SRA1020148
SRR035083.63677
454 Sequencing (SRP001804)
259
334
+
Arg
CCT
[SRA]
>SRA1020291
SRR035083.90660
454 Sequencing (SRP001804)
362
287
-
Arg
CCT
[SRA]
>SRA1020308
SRR035083.95307
454 Sequencing (SRP001804)
317
392
+
Arg
CCT
[SRA]
>SRA1020330
SRR035083.97646
454 Sequencing (SRP001804)
258
183
-
Arg
CCT
[SRA]
>SRA1020387
SRR035083.106323
454 Sequencing (SRP001804)
98
23
-
Arg
CCT
[SRA]
>SRA1020503
SRR035083.125165
454 Sequencing (SRP001804)
226
151
-
Arg
CCT
[SRA]
>SRA1020507
SRR035083.125463
454 Sequencing (SRP001804)
198
273
+
Arg
CCT
[SRA]
>SRA1020642
SRR035083.145652
454 Sequencing (SRP001804)
63
138
+
Arg
CCT
[SRA]
>SRA1020695
SRR035083.152660
454 Sequencing (SRP001804)
153
78
-
Arg
CCT
[SRA]
>SRA1020765
SRR035083.161693
454 Sequencing (SRP001804)
317
392
+
Arg
CCT
[SRA]
>SRA1020811
SRR035083.167581
454 Sequencing (SRP001804)
295
220
-
Arg
CCT
[SRA]
>SRA1020901
SRR035083.181337
454 Sequencing (SRP001804)
98
23
-
Arg
CCT
[SRA]
>SRA1020969
SRR035083.191223
454 Sequencing (SRP001804)
233
308
+
Arg
CCT
[SRA]
>SRA1020970
SRR035083.191338
454 Sequencing (SRP001804)
355
430
+
Arg
CCT
[SRA]
>SRA1021017
SRR035083.198141
454 Sequencing (SRP001804)
99
24
-
Arg
CCT
[SRA]
>SRA1021187
SRR035083.221148
454 Sequencing (SRP001804)
281
356
+
Arg
CCT
[SRA]
>SRA1021211
SRR035083.224430
454 Sequencing (SRP001804)
90
15
-
Arg
CCT
[SRA]
>SRA1021236
SRR035083.227498
454 Sequencing (SRP001804)
304
229
-
Arg
CCT
[SRA]
>SRA1021293
SRR035083.237949
454 Sequencing (SRP001804)
202
127
-
Arg
CCT
[SRA]
>SRA1021298
SRR035083.238613
454 Sequencing (SRP001804)
115
190
+
Arg
CCT
[SRA]
>SRA1021335
SRR035083.244583
454 Sequencing (SRP001804)
185
260
+
Arg
CCT
[SRA]
>SRA1021357
SRR035083.247944
454 Sequencing (SRP001804)
326
401
+
Arg
CCT
[SRA]
>SRA1021373
SRR035083.252554
454 Sequencing (SRP001804)
438
363
-
Arg
CCT
[SRA]
>SRA1021561
SRR035083.272849
454 Sequencing (SRP001804)
212
137
-
Arg
CCT
[SRA]
>SRA1021603
SRR035083.280386
454 Sequencing (SRP001804)
218
143
-
Arg
CCT
[SRA]
>SRA1021608
SRR035083.281151
454 Sequencing (SRP001804)
496
421
-
Arg
CCT
[SRA]
>SRA1021643
SRR035083.286085
454 Sequencing (SRP001804)
295
220
-
Arg
CCT
[SRA]
>SRA1021659
SRR035083.288379
454 Sequencing (SRP001804)
189
114
-
Arg
CCT
[SRA]
>SRA1021711
SRR035083.296363
454 Sequencing (SRP001804)
347
422
+
Arg
CCT
[SRA]
>SRA1021780
SRR035083.307909
454 Sequencing (SRP001804)
185
260
+
Arg
CCT
[SRA]
>SRA1021887
SRR035083.324714
454 Sequencing (SRP001804)
496
421
-
Arg
CCT
[SRA]
>SRA1022048
SRR035083.345471
454 Sequencing (SRP001804)
164
89
-
Arg
CCT
[SRA]
>SRA1022064
SRR035083.347908
454 Sequencing (SRP001804)
400
325
-
Arg
CCT
[SRA]
>SRA1022065
SRR035083.348064
454 Sequencing (SRP001804)
63
138
+
Arg
CCT
[SRA]
>SRA1022188
SRR035083.366142
454 Sequencing (SRP001804)
218
143
-
Arg
CCT
[SRA]
>SRA1022260
SRR035083.377806
454 Sequencing (SRP001804)
302
227
-
Arg
CCT
[SRA]
>SRA1022339
SRR035083.391964
454 Sequencing (SRP001804)
108
183
+
Arg
CCT
[SRA]
>SRA1022341
SRR035083.392138
454 Sequencing (SRP001804)
361
436
+
Arg
CCT
[SRA]
>SRA1022342
SRR035083.392389
454 Sequencing (SRP001804)
380
305
-
Arg
CCT
[SRA]
>SRA1022377
SRR035083.398132
454 Sequencing (SRP001804)
164
89
-
Arg
CCT
[SRA]
>SRA1022404
SRR035083.400878
454 Sequencing (SRP001804)
487
412
-
Arg
CCT
[SRA]
>SRA1022471
SRR035083.410359
454 Sequencing (SRP001804)
278
203
-
Arg
CCT
[SRA]
>SRA1022537
SRR035083.422143
454 Sequencing (SRP001804)
310
235
-
Arg
CCT
[SRA]
>SRA1022797
SRR035083.462018
454 Sequencing (SRP001804)
82
7
-
Arg
CCT
[SRA]
>SRA1022811
SRR035083.464847
454 Sequencing (SRP001804)
226
151
-
Arg
CCT
[SRA]
>SRA1022826
SRR035083.467911
454 Sequencing (SRP001804)
231
306
+
Arg
CCT
[SRA]
>SRA1022860
SRR035083.474923
454 Sequencing (SRP001804)
318
393
+
Arg
CCT
[SRA]
>SRA1022910
SRR035083.484122
454 Sequencing (SRP001804)
490
415
-
Arg
CCT
[SRA]
>SRA1022969
SRR035083.497488
454 Sequencing (SRP001804)
231
306
+
Arg
CCT
[SRA]
>SRA1022990
SRR035083.501098
454 Sequencing (SRP001804)
308
233
-
Arg
CCT
[SRA]
>SRA1022999
SRR035083.502786
454 Sequencing (SRP001804)
159
84
-
Arg
CCT
[SRA]
>SRA1023073
SRR035083.515543
454 Sequencing (SRP001804)
90
15
-
Arg
CCT
[SRA]
>SRA1031125
SRR035087.377378
454 Sequencing (SRP001808)
324
399
+
Arg
CCT
[SRA]
>SRA1031468
SRR035087.434671
454 Sequencing (SRP001808)
58
133
+
Arg
CCT
[SRA]
>SRA1031927
SRR035087.514164
454 Sequencing (SRP001808)
162
237
+
Arg
CCT
[SRA]
>SRA1032583
SRR035088.53898
454 Sequencing (SRP001809)
166
241
+
Arg
CCT
[SRA]
>SRA1032673
SRR035088.76243
454 Sequencing (SRP001809)
213
138
-
Arg
CCT
[SRA]
>SRA1033096
SRR035088.172430
454 Sequencing (SRP001809)
280
205
-
Arg
CCT
[SRA]
>SRA1033164
SRR035088.188439
454 Sequencing (SRP001809)
304
229
-
Arg
CCT
[SRA]
>SRA1033173
SRR035088.190305
454 Sequencing (SRP001809)
320
245
-
Arg
CCT
[SRA]
>SRA1033557
SRR035088.288659
454 Sequencing (SRP001809)
82
157
+
Arg
CCT
[SRA]
>SRA1034956
SRR035089.206084
454 Sequencing (SRP001810)
145
70
-
Arg
CCT
[SRA]
>SRA1036467
SRR035089.529400
454 Sequencing (SRP001810)
134
209
+
Arg
CCT
[SRA]
>SRA1036530
SRR035089.539018
454 Sequencing (SRP001810)
274
349
+
Arg
CCT
[SRA]
>SRA1037475
SRR035090.139762
454 Sequencing (SRP001811)
299
224
-
Arg
CCT
[SRA]
>SRA1037669
SRR035090.172221
454 Sequencing (SRP001811)
243
168
-
Arg
CCT
[SRA]
>SRA1037805
SRR035090.199408
454 Sequencing (SRP001811)
275
350
+
Arg
CCT
[SRA]
>SRA1037811
SRR035090.200645
454 Sequencing (SRP001811)
217
142
-
Arg
CCT
[SRA]
>SRA1037882
SRR035090.211610
454 Sequencing (SRP001811)
313
238
-
Arg
CCT
[SRA]
>SRA1038026
SRR035090.235554
454 Sequencing (SRP001811)
215
140
-
Arg
CCT
[SRA]
>SRA1038356
SRR035090.290868
454 Sequencing (SRP001811)
299
224
-
Arg
CCT
[SRA]
>SRA1038389
SRR035090.296244
454 Sequencing (SRP001811)
2
77
+
Arg
CCT
[SRA]
>SRA1038418
SRR035090.300509
454 Sequencing (SRP001811)
129
54
-
Arg
CCT
[SRA]
>SRA1038432
SRR035090.304276
454 Sequencing (SRP001811)
213
138
-
Arg
CCT
[SRA]
>SRA1038487
SRR035090.314155
454 Sequencing (SRP001811)
207
282
+
Arg
CCT
[SRA]
>SRA1038552
SRR035090.325913
454 Sequencing (SRP001811)
326
251
-
Arg
CCT
[SRA]
>SRA1038637
SRR035090.341447
454 Sequencing (SRP001811)
286
361
+
Arg
CCT
[SRA]
>SRA1038767
SRR035090.362238
454 Sequencing (SRP001811)
242
317
+
Arg
CCT
[SRA]
>SRA1038804
SRR035090.370480
454 Sequencing (SRP001811)
89
14
-
Arg
CCT
[SRA]
>SRA1038886
SRR035090.388184
454 Sequencing (SRP001811)
289
364
+
Arg
CCT
[SRA]
>SRA1038891
SRR035090.389057
454 Sequencing (SRP001811)
89
14
-
Arg
CCT
[SRA]
>SRA1038905
SRR035090.391630
454 Sequencing (SRP001811)
55
130
+
Arg
CCT
[SRA]
>SRA1039051
SRR035090.416837
454 Sequencing (SRP001811)
243
318
+
Arg
CCT
[SRA]
>SRA1039080
SRR035090.420893
454 Sequencing (SRP001811)
89
14
-
Arg
CCT
[SRA]
>SRA1039097
SRR035090.424408
454 Sequencing (SRP001811)
286
361
+
Arg
CCT
[SRA]
>SRA1039108
SRR035090.426770
454 Sequencing (SRP001811)
89
14
-
Arg
CCT
[SRA]
>SRA1039209
SRR035090.443841
454 Sequencing (SRP001811)
268
343
+
Arg
CCT
[SRA]
>SRA1039318
SRR035090.465788
454 Sequencing (SRP001811)
243
168
-
Arg
CCT
[SRA]
>SRA1039368
SRR035090.479093
454 Sequencing (SRP001811)
288
363
+
Arg
CCT
[SRA]
>SRA1039405
SRR035090.484767
454 Sequencing (SRP001811)
144
219
+
Arg
CCT
[SRA]
>SRA1039424
SRR035090.488147
454 Sequencing (SRP001811)
268
343
+
Arg
CCT
[SRA]
>SRA1039486
SRR035090.501577
454 Sequencing (SRP001811)
207
132
-
Arg
CCT
[SRA]
>SRA1039498
SRR035090.503916
454 Sequencing (SRP001811)
76
1
-
Arg
CCT
[SRA]
>SRA1039527
SRR035090.508758
454 Sequencing (SRP001811)
89
14
-
Arg
CCT
[SRA]
>SRA1039554
SRR035090.515226
454 Sequencing (SRP001811)
206
131
-
Arg
CCT
[SRA]
>SRA1039565
SRR035090.517768
454 Sequencing (SRP001811)
302
227
-
Arg
CCT
[SRA]
>SRA1039580
SRR035090.520114
454 Sequencing (SRP001811)
184
109
-
Arg
CCT
[SRA]
>SRA1039616
SRR035090.530200
454 Sequencing (SRP001811)
276
201
-
Arg
CCT
[SRA]
>SRA1039709
SRR035090.550948
454 Sequencing (SRP001811)
391
316
-
Arg
CCT
[SRA]
>SRA1039734
SRR035090.556092
454 Sequencing (SRP001811)
251
326
+
Arg
CCT
[SRA]
>SRA1039744
SRR035090.557840
454 Sequencing (SRP001811)
349
274
-
Arg
CCT
[SRA]
>SRA1039798
SRR035090.572647
454 Sequencing (SRP001811)
209
134
-
Arg
CCT
[SRA]
>SRA1039843
SRR035090.581693
454 Sequencing (SRP001811)
185
110
-
Arg
CCT
[SRA]
>SRA1042231
SRR035091.359620
454 Sequencing (SRP001812)
392
317
-
Arg
CCT
[SRA]
>SRA1042290
SRR035091.368003
454 Sequencing (SRP001812)
112
37
-
Arg
CCT
[SRA]
>SRA1042292
SRR035091.368849
454 Sequencing (SRP001812)
298
223
-
Arg
CCT
[SRA]
>SRA1046154
SRR035093.246932
454 Sequencing (SRP001814)
140
215
+
Arg
CCT
[SRA]
>SRA1046392
SRR035093.296181
454 Sequencing (SRP001814)
516
441
-
Arg
CCT
[SRA]
>SRA1046866
SRR035093.402233
454 Sequencing (SRP001814)
112
37
-
Arg
CCT
[SRA]
>SRA1047465
SRR035093.548288
454 Sequencing (SRP001814)
196
271
+
Arg
CCT
[SRA]
>SRA1047487
SRR035093.553168
454 Sequencing (SRP001814)
261
186
-
Arg
CCT
[SRA]
>SRA1050659
SRR035095.316240
454 Sequencing (SRP001816)
302
377
+
Arg
CCT
[SRA]
>SRA1052557
SRR035098.228515
454 Sequencing (SRP001819)
79
4
-
Arg
CCT
[SRA]
>SRA1053938
SRR035099.8880
454 Sequencing (SRP001820)
173
248
+
Arg
CCT
[SRA]
>SRA1054047
SRR035099.43176
454 Sequencing (SRP001820)
88
163
+
Arg
CCT
[SRA]
>SRA1054062
SRR035099.46613
454 Sequencing (SRP001820)
173
248
+
Arg
CCT
[SRA]
>SRA1054102
SRR035099.57495
454 Sequencing (SRP001820)
156
81
-
Arg
CCT
[SRA]
>SRA1054321
SRR035099.106132
454 Sequencing (SRP001820)
221
296
+
Arg
CCT
[SRA]
>SRA1054497
SRR035099.146470
454 Sequencing (SRP001820)
295
370
+
Arg
CCT
[SRA]
>SRA1054630
SRR035099.178454
454 Sequencing (SRP001820)
302
227
-
Arg
CCT
[SRA]
>SRA1054701
SRR035099.190350
454 Sequencing (SRP001820)
282
207
-
Arg
CCT
[SRA]
Identical group No.548848 (7 seq.)
>WENV170623419
FUWD013150636
[FUWD] metagenome; unknown
797
872
+
Arg
CCT
[ENA]
¢þ
>WENV170631686
FUWD013361693
[FUWD] metagenome; unknown
797
872
+
Arg
CCT
[ENA]
¢þ
>SRA1021189
SRR035083.221298
454 Sequencing (SRP001804)
334
409
+
Arg
CCT
[SRA]
>SRA1021502
SRR035083.266577
454 Sequencing (SRP001804)
332
407
+
Arg
CCT
[SRA]
>SRA1036872
SRR035090.29795
454 Sequencing (SRP001811)
92
167
+
Arg
CCT
[SRA]
>SRA1038056
SRR035090.240588
454 Sequencing (SRP001811)
98
173
+
Arg
CCT
[SRA]
>SRA1038754
SRR035090.360503
454 Sequencing (SRP001811)
99
174
+
Arg
CCT
[SRA]
Identical group No.647204 (1 seq.)
>SRA1021938
SRR035083.329612
454 Sequencing (SRP001804)
69
144
+
Arg
CCT
[SRA]
Identical group No.647239 (1 seq.)
>SRA1023033
SRR035083.508363
454 Sequencing (SRP001804)
231
156
-
Arg
CCT
[SRA]
Identical group No.654481 (2 seq.)
>SRA1020285
SRR035083.89909
454 Sequencing (SRP001804)
332
406
+
Arg
CCT
[SRA]
>SRA1034852
SRR035089.185837
454 Sequencing (SRP001810)
379
305
-
Arg
CCT
[SRA]
Identical group No.711409 (3 seq.)
>WENV170622501
FUWD013107418
[FUWD] metagenome; unknown
589
663
+
Arg
CCT
[ENA]
¢þ
>WENV170630726
FUWD013321739
[FUWD] metagenome; unknown
2078
2004
-
Arg
CCT
[ENA]
¢þ
>SRA1019958
SRR035083.30434
454 Sequencing (SRP001804)
306
380
+
Arg
CCT
[SRA]
Identical group No.775574 (5 seq.)
>SRA1020414
SRR035083.111181
454 Sequencing (SRP001804)
66
140
+
Arg
CCT
[SRA]
>SRA1020546
SRR035083.132638
454 Sequencing (SRP001804)
66
140
+
Arg
CCT
[SRA]
>SRA1020690
SRR035083.151990
454 Sequencing (SRP001804)
65
139
+
Arg
CCT
[SRA]
>SRA1020820
SRR035083.169125
454 Sequencing (SRP001804)
66
140
+
Arg
CCT
[SRA]
>SRA1021717
SRR035083.296848
454 Sequencing (SRP001804)
67
141
+
Arg
CCT
[SRA]
Identical group No.775600 (1 seq.)
>SRA1022133
SRR035083.356777
454 Sequencing (SRP001804)
345
419
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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