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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = CGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.446003 (1 seq.)
>SRA1020719
SRR035083.155078
454 Sequencing (SRP001804)
107
180
+
Thr
CGT
[SRA]
Identical group No.453578 (126 seq.)
>WENV170614007
FUWD012823500
[FUWD] metagenome; unknown
11954
11877
-
Thr
CGT
[ENA]
¢þ
>SRA1019868
SRR035083.9283
454 Sequencing (SRP001804)
360
283
-
Thr
CGT
[SRA]
>SRA1019911
SRR035083.19687
454 Sequencing (SRP001804)
324
401
+
Thr
CGT
[SRA]
>SRA1019916
SRR035083.21121
454 Sequencing (SRP001804)
163
86
-
Thr
CGT
[SRA]
>SRA1019964
SRR035083.30966
454 Sequencing (SRP001804)
326
403
+
Thr
CGT
[SRA]
>SRA1019976
SRR035083.34629
454 Sequencing (SRP001804)
324
401
+
Thr
CGT
[SRA]
>SRA1020029
SRR035083.43997
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1020030
SRR035083.44156
454 Sequencing (SRP001804)
363
286
-
Thr
CGT
[SRA]
>SRA1020050
SRR035083.48593
454 Sequencing (SRP001804)
158
81
-
Thr
CGT
[SRA]
>SRA1020058
SRR035083.51602
454 Sequencing (SRP001804)
329
406
+
Thr
CGT
[SRA]
>SRA1020083
SRR035083.55634
454 Sequencing (SRP001804)
328
405
+
Thr
CGT
[SRA]
>SRA1020252
SRR035083.83435
454 Sequencing (SRP001804)
327
404
+
Thr
CGT
[SRA]
>SRA1020318
SRR035083.96401
454 Sequencing (SRP001804)
109
32
-
Thr
CGT
[SRA]
>SRA1020371
SRR035083.103289
454 Sequencing (SRP001804)
109
32
-
Thr
CGT
[SRA]
>SRA1020382
SRR035083.105160
454 Sequencing (SRP001804)
116
39
-
Thr
CGT
[SRA]
>SRA1020447
SRR035083.116641
454 Sequencing (SRP001804)
470
393
-
Thr
CGT
[SRA]
>SRA1020460
SRR035083.118657
454 Sequencing (SRP001804)
156
79
-
Thr
CGT
[SRA]
>SRA1020497
SRR035083.123450
454 Sequencing (SRP001804)
116
39
-
Thr
CGT
[SRA]
>SRA1020506
SRR035083.125451
454 Sequencing (SRP001804)
144
67
-
Thr
CGT
[SRA]
>SRA1020515
SRR035083.128659
454 Sequencing (SRP001804)
469
392
-
Thr
CGT
[SRA]
>SRA1020632
SRR035083.143226
454 Sequencing (SRP001804)
71
148
+
Thr
CGT
[SRA]
>SRA1020760
SRR035083.160483
454 Sequencing (SRP001804)
166
243
+
Thr
CGT
[SRA]
>SRA1020788
SRR035083.165526
454 Sequencing (SRP001804)
164
87
-
Thr
CGT
[SRA]
>SRA1020867
SRR035083.175012
454 Sequencing (SRP001804)
369
292
-
Thr
CGT
[SRA]
>SRA1020907
SRR035083.182399
454 Sequencing (SRP001804)
109
32
-
Thr
CGT
[SRA]
>SRA1021016
SRR035083.197814
454 Sequencing (SRP001804)
137
214
+
Thr
CGT
[SRA]
>SRA1021037
SRR035083.201856
454 Sequencing (SRP001804)
393
316
-
Thr
CGT
[SRA]
>SRA1021044
SRR035083.202770
454 Sequencing (SRP001804)
145
68
-
Thr
CGT
[SRA]
>SRA1021048
SRR035083.203343
454 Sequencing (SRP001804)
459
382
-
Thr
CGT
[SRA]
>SRA1021324
SRR035083.242144
454 Sequencing (SRP001804)
110
33
-
Thr
CGT
[SRA]
>SRA1021444
SRR035083.259734
454 Sequencing (SRP001804)
89
12
-
Thr
CGT
[SRA]
>SRA1021488
SRR035083.265120
454 Sequencing (SRP001804)
449
524
+
Thr
CGT
[SRA]
>SRA1021563
SRR035083.273120
454 Sequencing (SRP001804)
145
68
-
Thr
CGT
[SRA]
>SRA1021592
SRR035083.277102
454 Sequencing (SRP001804)
13
90
+
Thr
CGT
[SRA]
>SRA1021616
SRR035083.282649
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1021829
SRR035083.314236
454 Sequencing (SRP001804)
137
214
+
Thr
CGT
[SRA]
>SRA1021830
SRR035083.314428
454 Sequencing (SRP001804)
144
67
-
Thr
CGT
[SRA]
>SRA1021876
SRR035083.321642
454 Sequencing (SRP001804)
194
117
-
Thr
CGT
[SRA]
>SRA1022283
SRR035083.381089
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1022392
SRR035083.399132
454 Sequencing (SRP001804)
100
23
-
Thr
CGT
[SRA]
>SRA1022447
SRR035083.406268
454 Sequencing (SRP001804)
39
116
+
Thr
CGT
[SRA]
>SRA1022509
SRR035083.416184
454 Sequencing (SRP001804)
178
101
-
Thr
CGT
[SRA]
>SRA1022533
SRR035083.421788
454 Sequencing (SRP001804)
291
366
+
Thr
CGT
[SRA]
>SRA1022565
SRR035083.424736
454 Sequencing (SRP001804)
212
135
-
Thr
CGT
[SRA]
>SRA1022592
SRR035083.430160
454 Sequencing (SRP001804)
144
67
-
Thr
CGT
[SRA]
>SRA1022630
SRR035083.435056
454 Sequencing (SRP001804)
119
42
-
Thr
CGT
[SRA]
>SRA1022639
SRR035083.436243
454 Sequencing (SRP001804)
145
68
-
Thr
CGT
[SRA]
>SRA1022670
SRR035083.439881
454 Sequencing (SRP001804)
106
29
-
Thr
CGT
[SRA]
>SRA1022715
SRR035083.446378
454 Sequencing (SRP001804)
155
78
-
Thr
CGT
[SRA]
>SRA1022733
SRR035083.450406
454 Sequencing (SRP001804)
41
118
+
Thr
CGT
[SRA]
>SRA1022841
SRR035083.470942
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1022866
SRR035083.475830
454 Sequencing (SRP001804)
106
29
-
Thr
CGT
[SRA]
>SRA1022911
SRR035083.485006
454 Sequencing (SRP001804)
40
117
+
Thr
CGT
[SRA]
>SRA1022921
SRR035083.486786
454 Sequencing (SRP001804)
166
89
-
Thr
CGT
[SRA]
>SRA1023031
SRR035083.507928
454 Sequencing (SRP001804)
99
176
+
Thr
CGT
[SRA]
>SRA1023058
SRR035083.513277
454 Sequencing (SRP001804)
150
73
-
Thr
CGT
[SRA]
>SRA1030102
SRR035087.227620
454 Sequencing (SRP001808)
260
336
+
Thr
CGT
[SRA]
>SRA1032223
SRR035087.580672
454 Sequencing (SRP001808)
105
182
+
Thr
CGT
[SRA]
>SRA1032741
SRR035088.92517
454 Sequencing (SRP001809)
6
83
+
Thr
CGT
[SRA]
>SRA1032779
SRR035088.102269
454 Sequencing (SRP001809)
389
312
-
Thr
CGT
[SRA]
>SRA1033254
SRR035088.207893
454 Sequencing (SRP001809)
241
164
-
Thr
CGT
[SRA]
>SRA1033798
SRR035088.358674
454 Sequencing (SRP001809)
184
107
-
Thr
CGT
[SRA]
>SRA1034137
SRR035088.505202
454 Sequencing (SRP001809)
121
198
+
Thr
CGT
[SRA]
>SRA1034734
SRR035089.162846
454 Sequencing (SRP001810)
36
113
+
Thr
CGT
[SRA]
>SRA1034824
SRR035089.180735
454 Sequencing (SRP001810)
294
371
+
Thr
CGT
[SRA]
>SRA1035342
SRR035089.286805
454 Sequencing (SRP001810)
290
213
-
Thr
CGT
[SRA]
>SRA1036849
SRR035090.24138
454 Sequencing (SRP001811)
303
226
-
Thr
CGT
[SRA]
>SRA1037036
SRR035090.62170
454 Sequencing (SRP001811)
246
169
-
Thr
CGT
[SRA]
>SRA1037096
SRR035090.72993
454 Sequencing (SRP001811)
165
88
-
Thr
CGT
[SRA]
>SRA1037175
SRR035090.87768
454 Sequencing (SRP001811)
316
239
-
Thr
CGT
[SRA]
>SRA1037445
SRR035090.136356
454 Sequencing (SRP001811)
203
280
+
Thr
CGT
[SRA]
>SRA1037564
SRR035090.155365
454 Sequencing (SRP001811)
202
279
+
Thr
CGT
[SRA]
>SRA1037606
SRR035090.162425
454 Sequencing (SRP001811)
380
456
+
Thr
CGT
[SRA]
>SRA1037660
SRR035090.171085
454 Sequencing (SRP001811)
379
302
-
Thr
CGT
[SRA]
>SRA1037818
SRR035090.201238
454 Sequencing (SRP001811)
107
30
-
Thr
CGT
[SRA]
>SRA1037867
SRR035090.208273
454 Sequencing (SRP001811)
198
121
-
Thr
CGT
[SRA]
>SRA1037968
SRR035090.227577
454 Sequencing (SRP001811)
191
114
-
Thr
CGT
[SRA]
>SRA1037998
SRR035090.231571
454 Sequencing (SRP001811)
246
169
-
Thr
CGT
[SRA]
>SRA1038000
SRR035090.232052
454 Sequencing (SRP001811)
136
59
-
Thr
CGT
[SRA]
>SRA1038099
SRR035090.245151
454 Sequencing (SRP001811)
204
127
-
Thr
CGT
[SRA]
>SRA1038136
SRR035090.252560
454 Sequencing (SRP001811)
349
272
-
Thr
CGT
[SRA]
>SRA1038160
SRR035090.255847
454 Sequencing (SRP001811)
272
195
-
Thr
CGT
[SRA]
>SRA1038212
SRR035090.265909
454 Sequencing (SRP001811)
205
282
+
Thr
CGT
[SRA]
>SRA1038285
SRR035090.280070
454 Sequencing (SRP001811)
215
292
+
Thr
CGT
[SRA]
>SRA1038286
SRR035090.280123
454 Sequencing (SRP001811)
201
278
+
Thr
CGT
[SRA]
>SRA1038307
SRR035090.284696
454 Sequencing (SRP001811)
136
59
-
Thr
CGT
[SRA]
>SRA1038310
SRR035090.285262
454 Sequencing (SRP001811)
235
312
+
Thr
CGT
[SRA]
>SRA1038327
SRR035090.288378
454 Sequencing (SRP001811)
240
317
+
Thr
CGT
[SRA]
>SRA1038414
SRR035090.299921
454 Sequencing (SRP001811)
271
194
-
Thr
CGT
[SRA]
>SRA1038448
SRR035090.306885
454 Sequencing (SRP001811)
136
59
-
Thr
CGT
[SRA]
>SRA1038658
SRR035090.345597
454 Sequencing (SRP001811)
171
94
-
Thr
CGT
[SRA]
>SRA1038676
SRR035090.348213
454 Sequencing (SRP001811)
379
302
-
Thr
CGT
[SRA]
>SRA1038713
SRR035090.353791
454 Sequencing (SRP001811)
247
170
-
Thr
CGT
[SRA]
>SRA1038759
SRR035090.360858
454 Sequencing (SRP001811)
36
113
+
Thr
CGT
[SRA]
>SRA1038790
SRR035090.366660
454 Sequencing (SRP001811)
101
178
+
Thr
CGT
[SRA]
>SRA1039039
SRR035090.413209
454 Sequencing (SRP001811)
113
36
-
Thr
CGT
[SRA]
>SRA1039117
SRR035090.428552
454 Sequencing (SRP001811)
84
7
-
Thr
CGT
[SRA]
>SRA1039141
SRR035090.431459
454 Sequencing (SRP001811)
362
285
-
Thr
CGT
[SRA]
>SRA1039247
SRR035090.451175
454 Sequencing (SRP001811)
13
90
+
Thr
CGT
[SRA]
>SRA1039348
SRR035090.473934
454 Sequencing (SRP001811)
201
124
-
Thr
CGT
[SRA]
>SRA1039350
SRR035090.474495
454 Sequencing (SRP001811)
228
151
-
Thr
CGT
[SRA]
>SRA1039408
SRR035090.485672
454 Sequencing (SRP001811)
363
286
-
Thr
CGT
[SRA]
>SRA1039454
SRR035090.495599
454 Sequencing (SRP001811)
248
325
+
Thr
CGT
[SRA]
>SRA1039464
SRR035090.497146
454 Sequencing (SRP001811)
362
285
-
Thr
CGT
[SRA]
>SRA1039476
SRR035090.499696
454 Sequencing (SRP001811)
39
116
+
Thr
CGT
[SRA]
>SRA1039495
SRR035090.503665
454 Sequencing (SRP001811)
14
91
+
Thr
CGT
[SRA]
>SRA1039514
SRR035090.507101
454 Sequencing (SRP001811)
123
200
+
Thr
CGT
[SRA]
>SRA1039587
SRR035090.520885
454 Sequencing (SRP001811)
178
101
-
Thr
CGT
[SRA]
>SRA1039609
SRR035090.528699
454 Sequencing (SRP001811)
191
114
-
Thr
CGT
[SRA]
>SRA1039743
SRR035090.556846
454 Sequencing (SRP001811)
198
121
-
Thr
CGT
[SRA]
>SRA1039807
SRR035090.574683
454 Sequencing (SRP001811)
101
24
-
Thr
CGT
[SRA]
>SRA1039910
SRR035090.599631
454 Sequencing (SRP001811)
117
40
-
Thr
CGT
[SRA]
>SRA1039944
SRR035090.610216
454 Sequencing (SRP001811)
157
80
-
Thr
CGT
[SRA]
>SRA1040448
SRR035091.98688
454 Sequencing (SRP001812)
105
28
-
Thr
CGT
[SRA]
>SRA1040909
SRR035091.167795
454 Sequencing (SRP001812)
155
78
-
Thr
CGT
[SRA]
>SRA1041620
SRR035091.270242
454 Sequencing (SRP001812)
192
269
+
Thr
CGT
[SRA]
>SRA1042030
SRR035091.329390
454 Sequencing (SRP001812)
63
140
+
Thr
CGT
[SRA]
>SRA1045381
SRR035093.81451
454 Sequencing (SRP001814)
157
234
+
Thr
CGT
[SRA]
>SRA1045415
SRR035093.90143
454 Sequencing (SRP001814)
160
83
-
Thr
CGT
[SRA]
>SRA1045550
SRR035093.120089
454 Sequencing (SRP001814)
439
362
-
Thr
CGT
[SRA]
>SRA1046745
SRR035093.374988
454 Sequencing (SRP001814)
128
204
+
Thr
CGT
[SRA]
>SRA1054058
SRR035099.44950
454 Sequencing (SRP001820)
138
61
-
Thr
CGT
[SRA]
>SRA1054173
SRR035099.75635
454 Sequencing (SRP001820)
176
99
-
Thr
CGT
[SRA]
>SRA1054417
SRR035099.129362
454 Sequencing (SRP001820)
187
110
-
Thr
CGT
[SRA]
>SRA1054496
SRR035099.146460
454 Sequencing (SRP001820)
234
157
-
Thr
CGT
[SRA]
>SRA1054641
SRR035099.181544
454 Sequencing (SRP001820)
187
264
+
Thr
CGT
[SRA]
Identical group No.507040 (3 seq.)
>WENV170611771
FUWD012391530
[FUWD] metagenome; unknown
192
267
+
Thr
CGT
[ENA]
¢þ
>SRA1023006
SRR035083.503531
454 Sequencing (SRP001804)
193
268
+
Thr
CGT
[SRA]
>SRA1054528
SRR035099.156096
454 Sequencing (SRP001820)
452
527
+
Thr
CGT
[SRA]
Identical group No.547738 (3 seq.)
>WENV170604070
FUWD010359115
[FUWD] metagenome; unknown
646
573
-
Thr
CGT
[ENA]
¢þ
>SRA1022030
SRR035083.341315
454 Sequencing (SRP001804)
393
468
+
Thr
CGT
[SRA]
>SRA1040514
SRR035091.107857
454 Sequencing (SRP001812)
202
277
+
Thr
CGT
[SRA]
Identical group No.548677 (6 seq.)
>WENV170620794
FUWD013039880
[FUWD] metagenome; unknown
1911
1986
+
Thr
CGT
[ENA]
¢þ
>WENV170628946
FUWD013257010
[FUWD] metagenome; unknown
1911
1986
+
Thr
CGT
[ENA]
¢þ
>SRA1020905
SRR035083.182045
454 Sequencing (SRP001804)
82
7
-
Thr
CGT
[SRA]
>SRA1020946
SRR035083.189294
454 Sequencing (SRP001804)
264
339
+
Thr
CGT
[SRA]
>SRA1021524
SRR035083.269018
454 Sequencing (SRP001804)
197
122
-
Thr
CGT
[SRA]
>SRA1022742
SRR035083.452046
454 Sequencing (SRP001804)
484
409
-
Thr
CGT
[SRA]
Identical group No.573810 (5 seq.)
>WENV170007173
AMWB02092485
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
11178
11103
-
Thr
CGT
[ENA]
¢þ
>WENV170694599
LGVD01130489
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
123
198
+
Thr
CGT
[ENA]
¢þ
>WENV170698645
LGVF01380775
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
130
55
-
Thr
CGT
[ENA]
¢þ
>SRA1020762
SRR035083.161160
454 Sequencing (SRP001804)
442
517
+
Thr
CGT
[SRA]
>W1511564443
LADS01000070
Deltaproteobacteria
Desulfobulbaceae bacterium BRH_c16a [LADS]
42905
42830
-
Thr
CGT
[ENA]
¡û
Identical group No.647220 (1 seq.)
>SRA1022307
SRR035083.386154
454 Sequencing (SRP001804)
71
144
+
Thr
CGT
[SRA]
Identical group No.775569 (1 seq.)
>SRA1019848
SRR035083.4254
454 Sequencing (SRP001804)
41
115
+
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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