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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = CTT
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254135 (6 seq.)
>WENV170611742
FUWD012386791
[FUWD] metagenome; unknown
31
107
+
Lys
CTT
[ENA]
¢þ
>SRA1020544
SRR035083.131865
454 Sequencing (SRP001804)
31
107
+
Lys
CTT
[SRA]
>SRA1020968
SRR035083.191187
454 Sequencing (SRP001804)
31
107
+
Lys
CTT
[SRA]
>SRA1021239
SRR035083.227761
454 Sequencing (SRP001804)
31
107
+
Lys
CTT
[SRA]
>SRA1021406
SRR035083.255405
454 Sequencing (SRP001804)
290
366
+
Lys
CTT
[SRA]
>SRA1021669
SRR035083.290379
454 Sequencing (SRP001804)
31
107
+
Lys
CTT
[SRA]
Identical group No.254237 (4 seq.)
>WENV170622812
FUWD013121686
[FUWD] metagenome; unknown
489
565
+
Lys
CTT
[ENA]
¢þ
>WENV170631028
FUWD013335395
[FUWD] metagenome; unknown
489
565
+
Lys
CTT
[ENA]
¢þ
>SRA1020818
SRR035083.167839
454 Sequencing (SRP001804)
119
43
-
Lys
CTT
[SRA]
>SRA1037338
SRR035090.118764
454 Sequencing (SRP001811)
201
125
-
Lys
CTT
[SRA]
Identical group No.446000 (2 seq.)
>SRA1020637
SRR035083.145110
454 Sequencing (SRP001804)
397
323
-
Lys
CTT
[SRA]
>SRA1022435
SRR035083.404870
454 Sequencing (SRP001804)
389
315
-
Lys
CTT
[SRA]
Identical group No.446016 (1 seq.)
>SRA1021223
SRR035083.226097
454 Sequencing (SRP001804)
453
526
+
Lys
CTT
[SRA]
Identical group No.446022 (1 seq.)
>SRA1021365
SRR035083.250454
454 Sequencing (SRP001804)
405
478
+
Lys
CTT
[SRA]
Identical group No.446052 (1 seq.)
>SRA1022562
SRR035083.424672
454 Sequencing (SRP001804)
410
336
-
Lys
CTT
[SRA]
Identical group No.446062 (1 seq.)
>SRA1022932
SRR035083.489945
454 Sequencing (SRP001804)
360
286
-
Lys
CTT
[SRA]
Identical group No.446067 (1 seq.)
>SRA1023074
SRR035083.515825
454 Sequencing (SRP001804)
21
95
+
Lys
CTT
[SRA]
Identical group No.484490 (137 seq.)
>w006974
AAIC01000071
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
6690
6618
-
Lys
CTT
[ENA]
¡û
>C08003659
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1755996
1755924
-
Lys
CTT
[Ensembl]
¡û
>WENV170613658
FUWD012815686
[FUWD] metagenome; unknown
12233
12306
+
Lys
CTT
[ENA]
¢þ
>W1810062225
PDNY01000010
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
54273
54199
-
Lys
CTT
[ENA]
¡û
>SRA1016952
SRR035082.58643
454 Sequencing (SRP001803)
84
157
+
Lys
CTT
[SRA]
>SRA1017381
SRR035082.130721
454 Sequencing (SRP001803)
200
127
-
Lys
CTT
[SRA]
>SRA1019962
SRR035083.30863
454 Sequencing (SRP001804)
342
415
+
Lys
CTT
[SRA]
>SRA1020027
SRR035083.43457
454 Sequencing (SRP001804)
179
252
+
Lys
CTT
[SRA]
>SRA1020164
SRR035083.65147
454 Sequencing (SRP001804)
304
231
-
Lys
CTT
[SRA]
>SRA1020176
SRR035083.67271
454 Sequencing (SRP001804)
180
107
-
Lys
CTT
[SRA]
>SRA1020198
SRR035083.73283
454 Sequencing (SRP001804)
152
79
-
Lys
CTT
[SRA]
>SRA1020270
SRR035083.87090
454 Sequencing (SRP001804)
330
403
+
Lys
CTT
[SRA]
>SRA1020281
SRR035083.88933
454 Sequencing (SRP001804)
116
189
+
Lys
CTT
[SRA]
>SRA1020314
SRR035083.95717
454 Sequencing (SRP001804)
341
268
-
Lys
CTT
[SRA]
>SRA1020319
SRR035083.96415
454 Sequencing (SRP001804)
99
26
-
Lys
CTT
[SRA]
>SRA1020321
SRR035083.96451
454 Sequencing (SRP001804)
114
187
+
Lys
CTT
[SRA]
>SRA1020385
SRR035083.105789
454 Sequencing (SRP001804)
498
425
-
Lys
CTT
[SRA]
>SRA1020495
SRR035083.122871
454 Sequencing (SRP001804)
52
125
+
Lys
CTT
[SRA]
>SRA1020496
SRR035083.123068
454 Sequencing (SRP001804)
385
458
+
Lys
CTT
[SRA]
>SRA1020548
SRR035083.133421
454 Sequencing (SRP001804)
58
131
+
Lys
CTT
[SRA]
>SRA1020589
SRR035083.138486
454 Sequencing (SRP001804)
330
403
+
Lys
CTT
[SRA]
>SRA1020592
SRR035083.138545
454 Sequencing (SRP001804)
150
77
-
Lys
CTT
[SRA]
>SRA1020677
SRR035083.151051
454 Sequencing (SRP001804)
115
188
+
Lys
CTT
[SRA]
>SRA1020693
SRR035083.152222
454 Sequencing (SRP001804)
267
194
-
Lys
CTT
[SRA]
>SRA1020938
SRR035083.188053
454 Sequencing (SRP001804)
52
125
+
Lys
CTT
[SRA]
>SRA1020978
SRR035083.192470
454 Sequencing (SRP001804)
330
403
+
Lys
CTT
[SRA]
>SRA1021026
SRR035083.199667
454 Sequencing (SRP001804)
341
268
-
Lys
CTT
[SRA]
>SRA1021068
SRR035083.205028
454 Sequencing (SRP001804)
324
397
+
Lys
CTT
[SRA]
>SRA1021115
SRR035083.209773
454 Sequencing (SRP001804)
125
52
-
Lys
CTT
[SRA]
>SRA1021122
SRR035083.211817
454 Sequencing (SRP001804)
19
92
+
Lys
CTT
[SRA]
>SRA1021134
SRR035083.213418
454 Sequencing (SRP001804)
115
188
+
Lys
CTT
[SRA]
>SRA1021140
SRR035083.213845
454 Sequencing (SRP001804)
309
236
-
Lys
CTT
[SRA]
>SRA1021273
SRR035083.234308
454 Sequencing (SRP001804)
372
299
-
Lys
CTT
[SRA]
>SRA1021280
SRR035083.235391
454 Sequencing (SRP001804)
50
123
+
Lys
CTT
[SRA]
>SRA1021389
SRR035083.253765
454 Sequencing (SRP001804)
331
404
+
Lys
CTT
[SRA]
>SRA1021539
SRR035083.270802
454 Sequencing (SRP001804)
71
144
+
Lys
CTT
[SRA]
>SRA1021602
SRR035083.279334
454 Sequencing (SRP001804)
94
167
+
Lys
CTT
[SRA]
>SRA1021636
SRR035083.284128
454 Sequencing (SRP001804)
115
188
+
Lys
CTT
[SRA]
>SRA1021642
SRR035083.286050
454 Sequencing (SRP001804)
116
189
+
Lys
CTT
[SRA]
>SRA1021678
SRR035083.291714
454 Sequencing (SRP001804)
115
188
+
Lys
CTT
[SRA]
>SRA1021687
SRR035083.292579
454 Sequencing (SRP001804)
185
258
+
Lys
CTT
[SRA]
>SRA1021768
SRR035083.306620
454 Sequencing (SRP001804)
372
299
-
Lys
CTT
[SRA]
>SRA1021877
SRR035083.322065
454 Sequencing (SRP001804)
194
121
-
Lys
CTT
[SRA]
>SRA1021914
SRR035083.327270
454 Sequencing (SRP001804)
376
303
-
Lys
CTT
[SRA]
>SRA1021999
SRR035083.336714
454 Sequencing (SRP001804)
430
503
+
Lys
CTT
[SRA]
>SRA1022101
SRR035083.353675
454 Sequencing (SRP001804)
410
483
+
Lys
CTT
[SRA]
>SRA1022117
SRR035083.355546
454 Sequencing (SRP001804)
116
189
+
Lys
CTT
[SRA]
>SRA1022130
SRR035083.356598
454 Sequencing (SRP001804)
441
368
-
Lys
CTT
[SRA]
>SRA1022205
SRR035083.367730
454 Sequencing (SRP001804)
99
26
-
Lys
CTT
[SRA]
>SRA1022221
SRR035083.369888
454 Sequencing (SRP001804)
320
393
+
Lys
CTT
[SRA]
>SRA1022326
SRR035083.390020
454 Sequencing (SRP001804)
316
243
-
Lys
CTT
[SRA]
>SRA1022410
SRR035083.402131
454 Sequencing (SRP001804)
161
234
+
Lys
CTT
[SRA]
>SRA1022452
SRR035083.406945
454 Sequencing (SRP001804)
354
427
+
Lys
CTT
[SRA]
>SRA1022524
SRR035083.420553
454 Sequencing (SRP001804)
363
290
-
Lys
CTT
[SRA]
>SRA1022575
SRR035083.427169
454 Sequencing (SRP001804)
237
164
-
Lys
CTT
[SRA]
>SRA1022624
SRR035083.434374
454 Sequencing (SRP001804)
19
92
+
Lys
CTT
[SRA]
>SRA1022765
SRR035083.456480
454 Sequencing (SRP001804)
341
268
-
Lys
CTT
[SRA]
>SRA1022798
SRR035083.462120
454 Sequencing (SRP001804)
63
136
+
Lys
CTT
[SRA]
>SRA1022804
SRR035083.463356
454 Sequencing (SRP001804)
380
453
+
Lys
CTT
[SRA]
>SRA1022835
SRR035083.469187
454 Sequencing (SRP001804)
146
73
-
Lys
CTT
[SRA]
>SRA1022844
SRR035083.472006
454 Sequencing (SRP001804)
189
116
-
Lys
CTT
[SRA]
>SRA1022875
SRR035083.476888
454 Sequencing (SRP001804)
20
93
+
Lys
CTT
[SRA]
>SRA1022899
SRR035083.481660
454 Sequencing (SRP001804)
219
146
-
Lys
CTT
[SRA]
>SRA1022938
SRR035083.490753
454 Sequencing (SRP001804)
166
239
+
Lys
CTT
[SRA]
>SRA1023042
SRR035083.510867
454 Sequencing (SRP001804)
334
261
-
Lys
CTT
[SRA]
>SRA1031784
SRR035087.486019
454 Sequencing (SRP001808)
159
86
-
Lys
CTT
[SRA]
>SRA1032304
SRR035087.598681
454 Sequencing (SRP001808)
158
85
-
Lys
CTT
[SRA]
>SRA1032619
SRR035088.65227
454 Sequencing (SRP001809)
84
157
+
Lys
CTT
[SRA]
>SRA1032895
SRR035088.125015
454 Sequencing (SRP001809)
9
82
+
Lys
CTT
[SRA]
>SRA1033153
SRR035088.184299
454 Sequencing (SRP001809)
209
136
-
Lys
CTT
[SRA]
>SRA1033852
SRR035088.377976
454 Sequencing (SRP001809)
282
209
-
Lys
CTT
[SRA]
>SRA1033897
SRR035088.398471
454 Sequencing (SRP001809)
4
77
+
Lys
CTT
[SRA]
>SRA1034068
SRR035088.473715
454 Sequencing (SRP001809)
256
329
+
Lys
CTT
[SRA]
>SRA1036825
SRR035090.16304
454 Sequencing (SRP001811)
176
103
-
Lys
CTT
[SRA]
>SRA1036898
SRR035090.34749
454 Sequencing (SRP001811)
272
345
+
Lys
CTT
[SRA]
>SRA1036949
SRR035090.43779
454 Sequencing (SRP001811)
196
123
-
Lys
CTT
[SRA]
>SRA1037021
SRR035090.60200
454 Sequencing (SRP001811)
176
103
-
Lys
CTT
[SRA]
>SRA1037030
SRR035090.61580
454 Sequencing (SRP001811)
357
430
+
Lys
CTT
[SRA]
>SRA1037034
SRR035090.62021
454 Sequencing (SRP001811)
271
344
+
Lys
CTT
[SRA]
>SRA1037038
SRR035090.62530
454 Sequencing (SRP001811)
270
343
+
Lys
CTT
[SRA]
>SRA1037053
SRR035090.66169
454 Sequencing (SRP001811)
372
445
+
Lys
CTT
[SRA]
>SRA1037098
SRR035090.73370
454 Sequencing (SRP001811)
190
263
+
Lys
CTT
[SRA]
>SRA1037199
SRR035090.92099
454 Sequencing (SRP001811)
177
104
-
Lys
CTT
[SRA]
>SRA1037209
SRR035090.93047
454 Sequencing (SRP001811)
273
346
+
Lys
CTT
[SRA]
>SRA1037267
SRR035090.105353
454 Sequencing (SRP001811)
253
180
-
Lys
CTT
[SRA]
>SRA1037308
SRR035090.110765
454 Sequencing (SRP001811)
176
103
-
Lys
CTT
[SRA]
>SRA1037496
SRR035090.142823
454 Sequencing (SRP001811)
273
346
+
Lys
CTT
[SRA]
>SRA1037605
SRR035090.162319
454 Sequencing (SRP001811)
220
293
+
Lys
CTT
[SRA]
>SRA1037706
SRR035090.177221
454 Sequencing (SRP001811)
144
71
-
Lys
CTT
[SRA]
>SRA1037733
SRR035090.183373
454 Sequencing (SRP001811)
196
123
-
Lys
CTT
[SRA]
>SRA1037760
SRR035090.189877
454 Sequencing (SRP001811)
178
105
-
Lys
CTT
[SRA]
>SRA1037789
SRR035090.195915
454 Sequencing (SRP001811)
209
136
-
Lys
CTT
[SRA]
>SRA1037857
SRR035090.205456
454 Sequencing (SRP001811)
273
346
+
Lys
CTT
[SRA]
>SRA1037888
SRR035090.212610
454 Sequencing (SRP001811)
189
116
-
Lys
CTT
[SRA]
>SRA1038077
SRR035090.242403
454 Sequencing (SRP001811)
209
136
-
Lys
CTT
[SRA]
>SRA1038095
SRR035090.244385
454 Sequencing (SRP001811)
133
206
+
Lys
CTT
[SRA]
>SRA1038216
SRR035090.266527
454 Sequencing (SRP001811)
81
154
+
Lys
CTT
[SRA]
>SRA1038278
SRR035090.278537
454 Sequencing (SRP001811)
236
309
+
Lys
CTT
[SRA]
>SRA1038412
SRR035090.299749
454 Sequencing (SRP001811)
146
219
+
Lys
CTT
[SRA]
>SRA1038492
SRR035090.314696
454 Sequencing (SRP001811)
133
206
+
Lys
CTT
[SRA]
>SRA1038526
SRR035090.320616
454 Sequencing (SRP001811)
146
219
+
Lys
CTT
[SRA]
>SRA1038574
SRR035090.329660
454 Sequencing (SRP001811)
177
104
-
Lys
CTT
[SRA]
>SRA1038581
SRR035090.330789
454 Sequencing (SRP001811)
151
78
-
Lys
CTT
[SRA]
>SRA1038706
SRR035090.352545
454 Sequencing (SRP001811)
200
273
+
Lys
CTT
[SRA]
>SRA1038746
SRR035090.359133
454 Sequencing (SRP001811)
355
282
-
Lys
CTT
[SRA]
>SRA1038801
SRR035090.368807
454 Sequencing (SRP001811)
345
418
+
Lys
CTT
[SRA]
>SRA1038809
SRR035090.371175
454 Sequencing (SRP001811)
200
273
+
Lys
CTT
[SRA]
>SRA1038838
SRR035090.376787
454 Sequencing (SRP001811)
200
273
+
Lys
CTT
[SRA]
>SRA1038977
SRR035090.402866
454 Sequencing (SRP001811)
148
221
+
Lys
CTT
[SRA]
>SRA1039210
SRR035090.445156
454 Sequencing (SRP001811)
165
92
-
Lys
CTT
[SRA]
>SRA1039225
SRR035090.446882
454 Sequencing (SRP001811)
263
190
-
Lys
CTT
[SRA]
>SRA1039325
SRR035090.467427
454 Sequencing (SRP001811)
199
126
-
Lys
CTT
[SRA]
>SRA1039366
SRR035090.479047
454 Sequencing (SRP001811)
196
123
-
Lys
CTT
[SRA]
>SRA1039439
SRR035090.491705
454 Sequencing (SRP001811)
144
217
+
Lys
CTT
[SRA]
>SRA1039443
SRR035090.493209
454 Sequencing (SRP001811)
232
159
-
Lys
CTT
[SRA]
>SRA1039470
SRR035090.498111
454 Sequencing (SRP001811)
200
127
-
Lys
CTT
[SRA]
>SRA1039589
SRR035090.521520
454 Sequencing (SRP001811)
111
38
-
Lys
CTT
[SRA]
>SRA1039791
SRR035090.570344
454 Sequencing (SRP001811)
114
41
-
Lys
CTT
[SRA]
>SRA1039883
SRR035090.591183
454 Sequencing (SRP001811)
317
244
-
Lys
CTT
[SRA]
>SRA1039901
SRR035090.597109
454 Sequencing (SRP001811)
377
304
-
Lys
CTT
[SRA]
>SRA1041519
SRR035091.255019
454 Sequencing (SRP001812)
17
90
+
Lys
CTT
[SRA]
>SRA1042499
SRR035091.398021
454 Sequencing (SRP001812)
356
283
-
Lys
CTT
[SRA]
>SRA1043211
SRR035092.74026
454 Sequencing (SRP001813)
485
412
-
Lys
CTT
[SRA]
>SRA1049129
SRR035095.25653
454 Sequencing (SRP001816)
140
213
+
Lys
CTT
[SRA]
>SRA1053649
SRR035098.460033
454 Sequencing (SRP001819)
105
32
-
Lys
CTT
[SRA]
>SRA1053857
SRR035098.517427
454 Sequencing (SRP001819)
105
32
-
Lys
CTT
[SRA]
>SRA1053898
SRR035098.530449
454 Sequencing (SRP001819)
158
85
-
Lys
CTT
[SRA]
>SRA1053960
SRR035099.16938
454 Sequencing (SRP001820)
97
24
-
Lys
CTT
[SRA]
>SRA1054005
SRR035099.32750
454 Sequencing (SRP001820)
165
92
-
Lys
CTT
[SRA]
>SRA1054010
SRR035099.33972
454 Sequencing (SRP001820)
120
47
-
Lys
CTT
[SRA]
>SRA1054025
SRR035099.36783
454 Sequencing (SRP001820)
11
84
+
Lys
CTT
[SRA]
>SRA1054071
SRR035099.50103
454 Sequencing (SRP001820)
402
329
-
Lys
CTT
[SRA]
>SRA1054260
SRR035099.93873
454 Sequencing (SRP001820)
151
78
-
Lys
CTT
[SRA]
>SRA1054380
SRR035099.119106
454 Sequencing (SRP001820)
260
187
-
Lys
CTT
[SRA]
>SRA1054406
SRR035099.126253
454 Sequencing (SRP001820)
260
187
-
Lys
CTT
[SRA]
>SRA1054463
SRR035099.138014
454 Sequencing (SRP001820)
402
475
+
Lys
CTT
[SRA]
>SRA1054520
SRR035099.153427
454 Sequencing (SRP001820)
151
78
-
Lys
CTT
[SRA]
Identical group No.548305 (3 seq.)
>WENV170611722
FUWD012383503
[FUWD] metagenome; unknown
62
137
+
Lys
CTT
[ENA]
¢þ
>SRA1020565
SRR035083.135817
454 Sequencing (SRP001804)
62
137
+
Lys
CTT
[SRA]
>SRA1038992
SRR035090.405598
454 Sequencing (SRP001811)
269
194
-
Lys
CTT
[SRA]
Identical group No.548818 (3 seq.)
>WENV170623055
FUWD013134403
[FUWD] metagenome; unknown
843
917
+
Lys
CTT
[ENA]
¢þ
>WENV170631289
FUWD013347422
[FUWD] metagenome; unknown
843
917
+
Lys
CTT
[ENA]
¢þ
>SRA1020256
SRR035083.84485
454 Sequencing (SRP001804)
178
252
+
Lys
CTT
[SRA]
Identical group No.647196 (1 seq.)
>SRA1021776
SRR035083.307604
454 Sequencing (SRP001804)
14
89
+
Lys
CTT
[SRA]
Identical group No.647207 (1 seq.)
>SRA1022041
SRR035083.344095
454 Sequencing (SRP001804)
429
356
-
Lys
CTT
[SRA]
Identical group No.647209 (1 seq.)
>SRA1022074
SRR035083.349271
454 Sequencing (SRP001804)
14
90
+
Lys
CTT
[SRA]
Identical group No.775595 (1 seq.)
>SRA1021847
SRR035083.317004
454 Sequencing (SRP001804)
416
344
-
Lys
CTT
[SRA]
Identical group No.775597 (1 seq.)
>SRA1021916
SRR035083.327338
454 Sequencing (SRP001804)
348
277
-
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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