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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = GCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358348 (3 seq.)
>WENV170612431
FUWD012608866
[FUWD] metagenome; unknown
90
14
-
Arg
GCG
[ENA]
¢þ
>SRA1021949
SRR035083.331268
454 Sequencing (SRP001804)
211
287
+
Arg
GCG
[SRA]
>SRA1040562
SRR035091.115470
454 Sequencing (SRP001812)
90
14
-
Arg
GCG
[SRA]
Identical group No.710590 (13 seq.)
>WENV170603280
FUWD010298477
[FUWD] metagenome; unknown
379
453
+
Arg
GCG
[ENA]
¢þ
>SRA1020249
SRR035083.82630
454 Sequencing (SRP001804)
222
296
+
Arg
GCG
[SRA]
>SRA1036913
SRR035090.37710
454 Sequencing (SRP001811)
270
344
+
Arg
GCG
[SRA]
>SRA1037062
SRR035090.68791
454 Sequencing (SRP001811)
276
350
+
Arg
GCG
[SRA]
>SRA1037588
SRR035090.159366
454 Sequencing (SRP001811)
275
349
+
Arg
GCG
[SRA]
>SRA1037921
SRR035090.218561
454 Sequencing (SRP001811)
274
348
+
Arg
GCG
[SRA]
>SRA1037950
SRR035090.225422
454 Sequencing (SRP001811)
275
349
+
Arg
GCG
[SRA]
>SRA1037993
SRR035090.230712
454 Sequencing (SRP001811)
379
453
+
Arg
GCG
[SRA]
>SRA1038241
SRR035090.269768
454 Sequencing (SRP001811)
276
350
+
Arg
GCG
[SRA]
>SRA1038335
SRR035090.289225
454 Sequencing (SRP001811)
274
348
+
Arg
GCG
[SRA]
>SRA1038810
SRR035090.371255
454 Sequencing (SRP001811)
275
349
+
Arg
GCG
[SRA]
>SRA1041658
SRR035091.275469
454 Sequencing (SRP001812)
103
177
+
Arg
GCG
[SRA]
>SRA1042334
SRR035091.373811
454 Sequencing (SRP001812)
105
179
+
Arg
GCG
[SRA]
Identical group No.711046 (8 seq.)
>WENV170611743
FUWD012387095
[FUWD] metagenome; unknown
377
303
-
Arg
GCG
[ENA]
¢þ
>SRA1021513
SRR035083.268208
454 Sequencing (SRP001804)
382
308
-
Arg
GCG
[SRA]
>SRA1036817
SRR035090.13858
454 Sequencing (SRP001811)
116
42
-
Arg
GCG
[SRA]
>SRA1036917
SRR035090.38264
454 Sequencing (SRP001811)
118
44
-
Arg
GCG
[SRA]
>SRA1036922
SRR035090.39002
454 Sequencing (SRP001811)
116
42
-
Arg
GCG
[SRA]
>SRA1037129
SRR035090.78382
454 Sequencing (SRP001811)
119
45
-
Arg
GCG
[SRA]
>SRA1037542
SRR035090.150907
454 Sequencing (SRP001811)
119
45
-
Arg
GCG
[SRA]
>SRA1037734
SRR035090.183737
454 Sequencing (SRP001811)
116
42
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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