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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = GCT
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9992 (3 seq.)
>WENV170611729
FUWD012385440
[FUWD] metagenome; unknown
166
259
+
Ser
GCT
[ENA]
¢þ
>SRA1021066
SRR035083.204986
454 Sequencing (SRP001804)
167
260
+
Ser
GCT
[SRA]
>SRA1036909
SRR035090.37467
454 Sequencing (SRP001811)
244
337
+
Ser
GCT
[SRA]
Identical group No.13442 (14 seq.)
>SRA1020334
SRR035083.98303
454 Sequencing (SRP001804)
114
22
-
Ser
GCT
[SRA]
>SRA1020512
SRR035083.127693
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1020836
SRR035083.171342
454 Sequencing (SRP001804)
456
364
-
Ser
GCT
[SRA]
>SRA1021244
SRR035083.227941
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021288
SRR035083.237016
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021499
SRR035083.266198
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1021954
SRR035083.331676
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1022119
SRR035083.355684
454 Sequencing (SRP001804)
428
336
-
Ser
GCT
[SRA]
>SRA1022564
SRR035083.424735
454 Sequencing (SRP001804)
173
265
+
Ser
GCT
[SRA]
>SRA1031978
SRR035087.524255
454 Sequencing (SRP001808)
262
170
-
Ser
GCT
[SRA]
>SRA1037816
SRR035090.200872
454 Sequencing (SRP001811)
150
58
-
Ser
GCT
[SRA]
>SRA1054168
SRR035099.74429
454 Sequencing (SRP001820)
329
237
-
Ser
GCT
[SRA]
>SRA1054199
SRR035099.81380
454 Sequencing (SRP001820)
329
237
-
Ser
GCT
[SRA]
>SRA1054559
SRR035099.163635
454 Sequencing (SRP001820)
380
288
-
Ser
GCT
[SRA]
Identical group No.19580 (1 seq.)
>SRA1020609
SRR035083.140510
454 Sequencing (SRP001804)
358
450
+
Ser
GCT
[SRA]
Identical group No.24686 (4 seq.)
>WENV170611714
FUWD012381996
[FUWD] metagenome; unknown
30
121
+
Ser
GCT
[ENA]
¢þ
>SRA1020246
SRR035083.82413
454 Sequencing (SRP001804)
232
323
+
Ser
GCT
[SRA]
>SRA1020812
SRR035083.167648
454 Sequencing (SRP001804)
232
323
+
Ser
GCT
[SRA]
>SRA1042101
SRR035091.338232
454 Sequencing (SRP001812)
397
306
-
Ser
GCT
[SRA]
Identical group No.29972 (1 seq.)
>SRA1022327
SRR035083.390250
454 Sequencing (SRP001804)
211
302
+
Ser
GCT
[SRA]
Identical group No.30416 (3 seq.)
>WENV170607789
FUWD010855984
[FUWD] metagenome; unknown
95
5
-
Ser
GCT
[ENA]
¢þ
>SRA1022823
SRR035083.467427
454 Sequencing (SRP001804)
242
152
-
Ser
GCT
[SRA]
>SRA1034210
SRR035089.24729
454 Sequencing (SRP001810)
295
205
-
Ser
GCT
[SRA]
Identical group No.30431 (9 seq.)
>WENV170621055
FUWD013047711
[FUWD] metagenome; unknown
289
379
+
Ser
GCT
[ENA]
¢þ
>WENV170629220
FUWD013264516
[FUWD] metagenome; unknown
289
379
+
Ser
GCT
[ENA]
¢þ
>SRA1020924
SRR035083.186154
454 Sequencing (SRP001804)
108
198
+
Ser
GCT
[SRA]
>SRA1021035
SRR035083.200891
454 Sequencing (SRP001804)
108
198
+
Ser
GCT
[SRA]
>SRA1021161
SRR035083.218292
454 Sequencing (SRP001804)
471
381
-
Ser
GCT
[SRA]
>SRA1021310
SRR035083.240393
454 Sequencing (SRP001804)
288
378
+
Ser
GCT
[SRA]
>SRA1021495
SRR035083.265751
454 Sequencing (SRP001804)
289
379
+
Ser
GCT
[SRA]
>SRA1021863
SRR035083.320231
454 Sequencing (SRP001804)
13
103
+
Ser
GCT
[SRA]
>SRA1035970
SRR035089.414842
454 Sequencing (SRP001810)
195
285
+
Ser
GCT
[SRA]
Identical group No.42734 (2 seq.)
>WENV170698677
LGVF01390546
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
919
829
-
Ser
GCT
[ENA]
¢þ
>SRA1020918
SRR035083.185290
454 Sequencing (SRP001804)
381
291
-
Ser
GCT
[SRA]
Identical group No.45183 (1 seq.)
>SRA1022725
SRR035083.448454
454 Sequencing (SRP001804)
354
264
-
Ser
GCT
[SRA]
Identical group No.52749 (3 seq.)
>WENV170611770
FUWD012391530
[FUWD] metagenome; unknown
6
95
+
Ser
GCT
[ENA]
¢þ
>SRA1023005
SRR035083.503531
454 Sequencing (SRP001804)
6
95
+
Ser
GCT
[SRA]
>SRA1054527
SRR035099.156096
454 Sequencing (SRP001820)
267
356
+
Ser
GCT
[SRA]
Identical group No.58005 (5 seq.)
>WENV170613340
FUWD012798001
[FUWD] metagenome; unknown
493
404
-
Ser
GCT
[ENA]
¢þ
>SRA1021797
SRR035083.311454
454 Sequencing (SRP001804)
228
317
+
Ser
GCT
[SRA]
>SRA1021860
SRR035083.319461
454 Sequencing (SRP001804)
227
316
+
Ser
GCT
[SRA]
>SRA1037893
SRR035090.214848
454 Sequencing (SRP001811)
93
4
-
Ser
GCT
[SRA]
>SRA1039354
SRR035090.474897
454 Sequencing (SRP001811)
93
4
-
Ser
GCT
[SRA]
Identical group No.71880 (2 seq.)
>SRA1021833
SRR035083.314845
454 Sequencing (SRP001804)
94
183
+
Ser
GCT
[SRA]
>SRA1022028
SRR035083.341200
454 Sequencing (SRP001804)
91
180
+
Ser
GCT
[SRA]
Identical group No.71882 (2 seq.)
>SRA1022603
SRR035083.431107
454 Sequencing (SRP001804)
258
169
-
Ser
GCT
[SRA]
>SRA1022917
SRR035083.485815
454 Sequencing (SRP001804)
259
170
-
Ser
GCT
[SRA]
Identical group No.71883 (1 seq.)
>SRA1022839
SRR035083.469937
454 Sequencing (SRP001804)
329
242
-
Ser
GCT
[SRA]
Identical group No.71884 (1 seq.)
>SRA1022937
SRR035083.490714
454 Sequencing (SRP001804)
149
238
+
Ser
GCT
[SRA]
Identical group No.86407 (1 seq.)
>SRA1020688
SRR035083.151589
454 Sequencing (SRP001804)
521
436
-
Ser
GCT
[SRA]
Identical group No.98486 (2 seq.)
>WENV170607770
FUWD010855033
[FUWD] metagenome; unknown
422
336
-
Ser
GCT
[ENA]
¢þ
>SRA1021104
SRR035083.208925
454 Sequencing (SRP001804)
407
321
-
Ser
GCT
[SRA]
Identical group No.152392 (1 seq.)
>SRA1019891
SRR035083.15675
454 Sequencing (SRP001804)
358
274
-
Ser
GCT
[SRA]
Identical group No.167773 (2 seq.)
>SRA1021761
SRR035083.304815
454 Sequencing (SRP001804)
21
105
+
Ser
GCT
[SRA]
>SRA1049210
SRR035095.38734
454 Sequencing (SRP001816)
359
275
-
Ser
GCT
[SRA]
Identical group No.216870 (1 seq.)
>SRA1020003
SRR035083.39421
454 Sequencing (SRP001804)
131
50
-
Ser
GCT
[SRA]
Identical group No.222866 (7 seq.)
>WENV170215495
CEPX01159329
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
283
363
+
Ser
GCT
[ENA]
¢þ
>WENV170612512
FUWD012626629
[FUWD] metagenome; unknown
234
314
+
Ser
GCT
[ENA]
¢þ
>WENV170613487
FUWD012808292
[FUWD] metagenome; unknown
321
401
+
Ser
GCT
[ENA]
¢þ
>SRA1020664
SRR035083.148698
454 Sequencing (SRP001804)
199
119
-
Ser
GCT
[SRA]
>SRA1041211
SRR035091.214083
454 Sequencing (SRP001812)
94
174
+
Ser
GCT
[SRA]
>SRA1041964
SRR035091.320314
454 Sequencing (SRP001812)
234
314
+
Ser
GCT
[SRA]
>SRA1050645
SRR035095.312420
454 Sequencing (SRP001816)
189
109
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK