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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = GGA
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6824 (2 seq.)
>WENV170611760
FUWD012390258
[FUWD] metagenome; unknown
50
141
+
Ser
GGA
[ENA]
¢þ
>SRA1022516
SRR035083.418724
454 Sequencing (SRP001804)
50
141
+
Ser
GGA
[SRA]
Identical group No.19581 (1 seq.)
>SRA1022001
SRR035083.337642
454 Sequencing (SRP001804)
490
401
-
Ser
GGA
[SRA]
Identical group No.24673 (3 seq.)
>WENV170607779
FUWD010855598
[FUWD] metagenome; unknown
489
401
-
Ser
GGA
[ENA]
¢þ
>SRA1020914
SRR035083.183980
454 Sequencing (SRP001804)
489
401
-
Ser
GGA
[SRA]
>SRA1037673
SRR035090.172437
454 Sequencing (SRP001811)
246
158
-
Ser
GGA
[SRA]
Identical group No.45177 (1 seq.)
>SRA1020031
SRR035083.44174
454 Sequencing (SRP001804)
164
252
+
Ser
GGA
[SRA]
Identical group No.45179 (1 seq.)
>SRA1021852
SRR035083.317812
454 Sequencing (SRP001804)
529
441
-
Ser
GGA
[SRA]
Identical group No.45180 (1 seq.)
>SRA1022308
SRR035083.386347
454 Sequencing (SRP001804)
249
161
-
Ser
GGA
[SRA]
Identical group No.45181 (1 seq.)
>SRA1022436
SRR035083.405250
454 Sequencing (SRP001804)
487
400
-
Ser
GGA
[SRA]
Identical group No.45862 (133 seq.)
>W1711167311
LVWG01000027
Chlorobi
Pelodictyon luteolum (LVWG)
57950
58037
+
Ser
GGA
[ENA]
¡û
>C016742
CP000096
Chlorobi
Pelodictyon luteolum DSM 273
908983
909069
+
Ser
GGA
[Ensembl]
¡û
>C018269
CP000607
Chlorobi
Prosthecochloris vibrioformis DSM 265
1190424
1190335
-
Ser
GGA
[Ensembl]
¡û
>WENV183812102
PYLN01000026
[PYLN] freshwater metagenome; meromictic lake
807
718
-
Ser
GGA
[ENA]
¢þ
>WENV170613663
FUWD012815692
[FUWD] metagenome; unknown
718
805
+
Ser
GGA
[ENA]
¢þ
>WENV170613757
FUWD012818317
[FUWD] metagenome; unknown
639
726
+
Ser
GGA
[ENA]
¢þ
>W09103365
AAJD01000012
Chlorobi
Prosthecochloris vibrioformis DSM 265 [AAJD]
2943
2854
-
Ser
GGA
[ENA]
¡û
>SRA1016750
SRR035082.18551
454 Sequencing (SRP001803)
104
17
-
Ser
GGA
[SRA]
>SRA1019846
SRR035083.3735
454 Sequencing (SRP001804)
444
357
-
Ser
GGA
[SRA]
>SRA1019951
SRR035083.29514
454 Sequencing (SRP001804)
413
500
+
Ser
GGA
[SRA]
>SRA1020051
SRR035083.48957
454 Sequencing (SRP001804)
92
179
+
Ser
GGA
[SRA]
>SRA1020069
SRR035083.53099
454 Sequencing (SRP001804)
450
363
-
Ser
GGA
[SRA]
>SRA1020076
SRR035083.54387
454 Sequencing (SRP001804)
498
411
-
Ser
GGA
[SRA]
>SRA1020079
SRR035083.54816
454 Sequencing (SRP001804)
164
251
+
Ser
GGA
[SRA]
>SRA1020177
SRR035083.67400
454 Sequencing (SRP001804)
216
303
+
Ser
GGA
[SRA]
>SRA1020190
SRR035083.70140
454 Sequencing (SRP001804)
276
363
+
Ser
GGA
[SRA]
>SRA1020196
SRR035083.72828
454 Sequencing (SRP001804)
224
311
+
Ser
GGA
[SRA]
>SRA1020276
SRR035083.87936
454 Sequencing (SRP001804)
101
188
+
Ser
GGA
[SRA]
>SRA1020303
SRR035083.93826
454 Sequencing (SRP001804)
174
261
+
Ser
GGA
[SRA]
>SRA1020366
SRR035083.102252
454 Sequencing (SRP001804)
93
180
+
Ser
GGA
[SRA]
>SRA1020425
SRR035083.113278
454 Sequencing (SRP001804)
104
17
-
Ser
GGA
[SRA]
>SRA1020436
SRR035083.115370
454 Sequencing (SRP001804)
189
276
+
Ser
GGA
[SRA]
>SRA1020484
SRR035083.121583
454 Sequencing (SRP001804)
239
152
-
Ser
GGA
[SRA]
>SRA1020504
SRR035083.125256
454 Sequencing (SRP001804)
362
275
-
Ser
GGA
[SRA]
>SRA1020668
SRR035083.149651
454 Sequencing (SRP001804)
165
252
+
Ser
GGA
[SRA]
>SRA1020706
SRR035083.154062
454 Sequencing (SRP001804)
308
395
+
Ser
GGA
[SRA]
>SRA1020752
SRR035083.159705
454 Sequencing (SRP001804)
137
50
-
Ser
GGA
[SRA]
>SRA1020842
SRR035083.172248
454 Sequencing (SRP001804)
125
212
+
Ser
GGA
[SRA]
>SRA1020848
SRR035083.172784
454 Sequencing (SRP001804)
134
221
+
Ser
GGA
[SRA]
>SRA1020868
SRR035083.175016
454 Sequencing (SRP001804)
111
24
-
Ser
GGA
[SRA]
>SRA1020896
SRR035083.180800
454 Sequencing (SRP001804)
248
161
-
Ser
GGA
[SRA]
>SRA1020927
SRR035083.186504
454 Sequencing (SRP001804)
147
234
+
Ser
GGA
[SRA]
>SRA1020929
SRR035083.186817
454 Sequencing (SRP001804)
7
94
+
Ser
GGA
[SRA]
>SRA1021349
SRR035083.247038
454 Sequencing (SRP001804)
296
383
+
Ser
GGA
[SRA]
>SRA1021366
SRR035083.250892
454 Sequencing (SRP001804)
276
363
+
Ser
GGA
[SRA]
>SRA1021367
SRR035083.250961
454 Sequencing (SRP001804)
194
281
+
Ser
GGA
[SRA]
>SRA1021424
SRR035083.256683
454 Sequencing (SRP001804)
296
383
+
Ser
GGA
[SRA]
>SRA1021519
SRR035083.268671
454 Sequencing (SRP001804)
267
180
-
Ser
GGA
[SRA]
>SRA1021609
SRR035083.281173
454 Sequencing (SRP001804)
239
152
-
Ser
GGA
[SRA]
>SRA1021663
SRR035083.289624
454 Sequencing (SRP001804)
82
169
+
Ser
GGA
[SRA]
>SRA1021665
SRR035083.290088
454 Sequencing (SRP001804)
149
236
+
Ser
GGA
[SRA]
>SRA1021919
SRR035083.328011
454 Sequencing (SRP001804)
154
67
-
Ser
GGA
[SRA]
>SRA1021931
SRR035083.329054
454 Sequencing (SRP001804)
145
58
-
Ser
GGA
[SRA]
>SRA1021982
SRR035083.334635
454 Sequencing (SRP001804)
115
202
+
Ser
GGA
[SRA]
>SRA1021996
SRR035083.336121
454 Sequencing (SRP001804)
248
161
-
Ser
GGA
[SRA]
>SRA1022036
SRR035083.342775
454 Sequencing (SRP001804)
518
431
-
Ser
GGA
[SRA]
>SRA1022172
SRR035083.363676
454 Sequencing (SRP001804)
111
198
+
Ser
GGA
[SRA]
>SRA1022560
SRR035083.424332
454 Sequencing (SRP001804)
65
152
+
Ser
GGA
[SRA]
>SRA1022916
SRR035083.485807
454 Sequencing (SRP001804)
130
217
+
Ser
GGA
[SRA]
>SRA1022993
SRR035083.501585
454 Sequencing (SRP001804)
172
85
-
Ser
GGA
[SRA]
>SRA1032905
SRR035088.127814
454 Sequencing (SRP001809)
196
109
-
Ser
GGA
[SRA]
>SRA1033427
SRR035088.254204
454 Sequencing (SRP001809)
47
134
+
Ser
GGA
[SRA]
>SRA1033588
SRR035088.295604
454 Sequencing (SRP001809)
401
314
-
Ser
GGA
[SRA]
>SRA1034075
SRR035088.475534
454 Sequencing (SRP001809)
11
98
+
Ser
GGA
[SRA]
>SRA1034667
SRR035089.147670
454 Sequencing (SRP001810)
102
15
-
Ser
GGA
[SRA]
>SRA1035790
SRR035089.375554
454 Sequencing (SRP001810)
207
294
+
Ser
GGA
[SRA]
>SRA1036797
SRR035090.8328
454 Sequencing (SRP001811)
141
228
+
Ser
GGA
[SRA]
>SRA1036870
SRR035090.29678
454 Sequencing (SRP001811)
9
96
+
Ser
GGA
[SRA]
>SRA1036880
SRR035090.30820
454 Sequencing (SRP001811)
105
192
+
Ser
GGA
[SRA]
>SRA1036895
SRR035090.33588
454 Sequencing (SRP001811)
165
252
+
Ser
GGA
[SRA]
>SRA1036936
SRR035090.41016
454 Sequencing (SRP001811)
286
373
+
Ser
GGA
[SRA]
>SRA1036970
SRR035090.49317
454 Sequencing (SRP001811)
264
351
+
Ser
GGA
[SRA]
>SRA1037000
SRR035090.56157
454 Sequencing (SRP001811)
99
12
-
Ser
GGA
[SRA]
>SRA1037109
SRR035090.74648
454 Sequencing (SRP001811)
160
73
-
Ser
GGA
[SRA]
>SRA1037112
SRR035090.75505
454 Sequencing (SRP001811)
263
350
+
Ser
GGA
[SRA]
>SRA1037124
SRR035090.77529
454 Sequencing (SRP001811)
160
73
-
Ser
GGA
[SRA]
>SRA1037141
SRR035090.81174
454 Sequencing (SRP001811)
248
161
-
Ser
GGA
[SRA]
>SRA1037146
SRR035090.81865
454 Sequencing (SRP001811)
449
362
-
Ser
GGA
[SRA]
>SRA1037165
SRR035090.87019
454 Sequencing (SRP001811)
164
77
-
Ser
GGA
[SRA]
>SRA1037191
SRR035090.90994
454 Sequencing (SRP001811)
166
253
+
Ser
GGA
[SRA]
>SRA1037208
SRR035090.92747
454 Sequencing (SRP001811)
100
13
-
Ser
GGA
[SRA]
>SRA1037228
SRR035090.97074
454 Sequencing (SRP001811)
45
132
+
Ser
GGA
[SRA]
>SRA1037268
SRR035090.105702
454 Sequencing (SRP001811)
164
77
-
Ser
GGA
[SRA]
>SRA1037307
SRR035090.110677
454 Sequencing (SRP001811)
344
257
-
Ser
GGA
[SRA]
>SRA1037324
SRR035090.115010
454 Sequencing (SRP001811)
160
73
-
Ser
GGA
[SRA]
>SRA1037373
SRR035090.124516
454 Sequencing (SRP001811)
365
278
-
Ser
GGA
[SRA]
>SRA1037387
SRR035090.127345
454 Sequencing (SRP001811)
414
501
+
Ser
GGA
[SRA]
>SRA1037432
SRR035090.134927
454 Sequencing (SRP001811)
414
501
+
Ser
GGA
[SRA]
>SRA1037491
SRR035090.142333
454 Sequencing (SRP001811)
18
105
+
Ser
GGA
[SRA]
>SRA1037506
SRR035090.143521
454 Sequencing (SRP001811)
131
44
-
Ser
GGA
[SRA]
>SRA1037507
SRR035090.143942
454 Sequencing (SRP001811)
226
313
+
Ser
GGA
[SRA]
>SRA1037512
SRR035090.144542
454 Sequencing (SRP001811)
262
349
+
Ser
GGA
[SRA]
>SRA1037527
SRR035090.147523
454 Sequencing (SRP001811)
164
77
-
Ser
GGA
[SRA]
>SRA1037567
SRR035090.156025
454 Sequencing (SRP001811)
55
142
+
Ser
GGA
[SRA]
>SRA1037585
SRR035090.158424
454 Sequencing (SRP001811)
222
135
-
Ser
GGA
[SRA]
>SRA1037616
SRR035090.163694
454 Sequencing (SRP001811)
164
77
-
Ser
GGA
[SRA]
>SRA1037636
SRR035090.166552
454 Sequencing (SRP001811)
196
109
-
Ser
GGA
[SRA]
>SRA1037670
SRR035090.172327
454 Sequencing (SRP001811)
164
77
-
Ser
GGA
[SRA]
>SRA1037682
SRR035090.173811
454 Sequencing (SRP001811)
18
105
+
Ser
GGA
[SRA]
>SRA1037785
SRR035090.194795
454 Sequencing (SRP001811)
188
275
+
Ser
GGA
[SRA]
>SRA1037786
SRR035090.195507
454 Sequencing (SRP001811)
45
132
+
Ser
GGA
[SRA]
>SRA1037876
SRR035090.209999
454 Sequencing (SRP001811)
57
144
+
Ser
GGA
[SRA]
>SRA1037943
SRR035090.223256
454 Sequencing (SRP001811)
394
307
-
Ser
GGA
[SRA]
>SRA1037960
SRR035090.226919
454 Sequencing (SRP001811)
81
168
+
Ser
GGA
[SRA]
>SRA1037983
SRR035090.229455
454 Sequencing (SRP001811)
164
77
-
Ser
GGA
[SRA]
>SRA1038003
SRR035090.232742
454 Sequencing (SRP001811)
262
349
+
Ser
GGA
[SRA]
>SRA1038093
SRR035090.243768
454 Sequencing (SRP001811)
43
130
+
Ser
GGA
[SRA]
>SRA1038165
SRR035090.256946
454 Sequencing (SRP001811)
103
190
+
Ser
GGA
[SRA]
>SRA1038166
SRR035090.257281
454 Sequencing (SRP001811)
56
143
+
Ser
GGA
[SRA]
>SRA1038227
SRR035090.268083
454 Sequencing (SRP001811)
164
77
-
Ser
GGA
[SRA]
>SRA1038246
SRR035090.271807
454 Sequencing (SRP001811)
187
274
+
Ser
GGA
[SRA]
>SRA1038287
SRR035090.280299
454 Sequencing (SRP001811)
274
361
+
Ser
GGA
[SRA]
>SRA1038317
SRR035090.286793
454 Sequencing (SRP001811)
163
76
-
Ser
GGA
[SRA]
>SRA1038345
SRR035090.289935
454 Sequencing (SRP001811)
183
270
+
Ser
GGA
[SRA]
>SRA1038348
SRR035090.290236
454 Sequencing (SRP001811)
270
357
+
Ser
GGA
[SRA]
>SRA1038497
SRR035090.315758
454 Sequencing (SRP001811)
342
429
+
Ser
GGA
[SRA]
>SRA1038758
SRR035090.360722
454 Sequencing (SRP001811)
169
256
+
Ser
GGA
[SRA]
>SRA1038974
SRR035090.402772
454 Sequencing (SRP001811)
81
168
+
Ser
GGA
[SRA]
>SRA1039028
SRR035090.410499
454 Sequencing (SRP001811)
168
255
+
Ser
GGA
[SRA]
>SRA1039031
SRR035090.410842
454 Sequencing (SRP001811)
193
280
+
Ser
GGA
[SRA]
>SRA1039127
SRR035090.429265
454 Sequencing (SRP001811)
64
151
+
Ser
GGA
[SRA]
>SRA1039377
SRR035090.479878
454 Sequencing (SRP001811)
75
162
+
Ser
GGA
[SRA]
>SRA1039452
SRR035090.495070
454 Sequencing (SRP001811)
194
281
+
Ser
GGA
[SRA]
>SRA1039494
SRR035090.503548
454 Sequencing (SRP001811)
240
153
-
Ser
GGA
[SRA]
>SRA1039603
SRR035090.526292
454 Sequencing (SRP001811)
93
180
+
Ser
GGA
[SRA]
>SRA1039666
SRR035090.540089
454 Sequencing (SRP001811)
77
164
+
Ser
GGA
[SRA]
>SRA1039776
SRR035090.566301
454 Sequencing (SRP001811)
93
180
+
Ser
GGA
[SRA]
>SRA1039784
SRR035090.568573
454 Sequencing (SRP001811)
57
144
+
Ser
GGA
[SRA]
>SRA1039816
SRR035090.576429
454 Sequencing (SRP001811)
94
181
+
Ser
GGA
[SRA]
>SRA1039841
SRR035090.581553
454 Sequencing (SRP001811)
176
89
-
Ser
GGA
[SRA]
>SRA1039950
SRR035090.612002
454 Sequencing (SRP001811)
187
274
+
Ser
GGA
[SRA]
>SRA1045230
SRR035093.36375
454 Sequencing (SRP001814)
441
354
-
Ser
GGA
[SRA]
>SRA1045489
SRR035093.105647
454 Sequencing (SRP001814)
242
155
-
Ser
GGA
[SRA]
>SRA1045869
SRR035093.184344
454 Sequencing (SRP001814)
217
130
-
Ser
GGA
[SRA]
>SRA1049169
SRR035095.32185
454 Sequencing (SRP001816)
125
212
+
Ser
GGA
[SRA]
>SRA1053999
SRR035099.30376
454 Sequencing (SRP001820)
210
297
+
Ser
GGA
[SRA]
>SRA1054014
SRR035099.35365
454 Sequencing (SRP001820)
85
172
+
Ser
GGA
[SRA]
>SRA1054074
SRR035099.50857
454 Sequencing (SRP001820)
243
330
+
Ser
GGA
[SRA]
>SRA1054125
SRR035099.65754
454 Sequencing (SRP001820)
221
134
-
Ser
GGA
[SRA]
>SRA1054139
SRR035099.68400
454 Sequencing (SRP001820)
214
301
+
Ser
GGA
[SRA]
>SRA1054534
SRR035099.157554
454 Sequencing (SRP001820)
410
497
+
Ser
GGA
[SRA]
>SRA1054621
SRR035099.175042
454 Sequencing (SRP001820)
249
162
-
Ser
GGA
[SRA]
>W1610977642
LVWG01000027
Chlorobi
Pelodictyon luteolum (LVWG)
57950
58037
+
Ser
GGA
[ENA]
¡û
Identical group No.57975 (4 seq.)
>WENV170611715
FUWD012381996
[FUWD] metagenome; unknown
227
316
+
Ser
GGA
[ENA]
¢þ
>SRA1020247
SRR035083.82413
454 Sequencing (SRP001804)
429
518
+
Ser
GGA
[SRA]
>SRA1020813
SRR035083.167648
454 Sequencing (SRP001804)
429
518
+
Ser
GGA
[SRA]
>SRA1042102
SRR035091.338232
454 Sequencing (SRP001812)
199
110
-
Ser
GGA
[SRA]
Identical group No.71877 (1 seq.)
>SRA1020162
SRR035083.64961
454 Sequencing (SRP001804)
8
97
+
Ser
GGA
[SRA]
Identical group No.71878 (1 seq.)
>SRA1021176
SRR035083.219750
454 Sequencing (SRP001804)
311
397
+
Ser
GGA
[SRA]
Identical group No.86406 (1 seq.)
>SRA1020481
SRR035083.121268
454 Sequencing (SRP001804)
422
508
+
Ser
GGA
[SRA]
Identical group No.86408 (1 seq.)
>SRA1021397
SRR035083.254256
454 Sequencing (SRP001804)
360
446
+
Ser
GGA
[SRA]
Identical group No.111499 (2 seq.)
>SRA1020499
SRR035083.124254
454 Sequencing (SRP001804)
187
274
+
Ser
GGA
[SRA]
>SRA1021618
SRR035083.282858
454 Sequencing (SRP001804)
189
276
+
Ser
GGA
[SRA]
Identical group No.111500 (1 seq.)
>SRA1020753
SRR035083.159965
454 Sequencing (SRP001804)
471
384
-
Ser
GGA
[SRA]
Identical group No.111504 (1 seq.)
>SRA1022228
SRR035083.371107
454 Sequencing (SRP001804)
131
216
+
Ser
GGA
[SRA]
Identical group No.111505 (1 seq.)
>SRA1022606
SRR035083.431565
454 Sequencing (SRP001804)
118
205
+
Ser
GGA
[SRA]
Identical group No.152395 (1 seq.)
>SRA1020485
SRR035083.122228
454 Sequencing (SRP001804)
424
508
+
Ser
GGA
[SRA]
Identical group No.222860 (3 seq.)
>WENV170611768
FUWD012391421
[FUWD] metagenome; unknown
84
4
-
Ser
GGA
[ENA]
¢þ
>SRA1022963
SRR035083.496042
454 Sequencing (SRP001804)
150
70
-
Ser
GGA
[SRA]
>SRA1042962
SRR035092.5815
454 Sequencing (SRP001813)
287
369
+
Ser
GGA
[SRA]
Identical group No.228200 (1 seq.)
>SRA1020165
SRR035083.65189
454 Sequencing (SRP001804)
43
125
+
Ser
GGA
[SRA]
Identical group No.228201 (1 seq.)
>SRA1022261
SRR035083.378100
454 Sequencing (SRP001804)
450
370
-
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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