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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001804)
Anticodon = GTT
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321156 (4 seq.)
>WENV170607787
FUWD010855984
[FUWD] metagenome; unknown
276
200
-
Asn
GTT
[ENA]
¢þ
>SRA1017034
SRR035082.70195
454 Sequencing (SRP001803)
169
93
-
Asn
GTT
[SRA]
>SRA1022821
SRR035083.467427
454 Sequencing (SRP001804)
422
346
-
Asn
GTT
[SRA]
>SRA1054021
SRR035099.36013
454 Sequencing (SRP001820)
228
152
-
Asn
GTT
[SRA]
Identical group No.357787 (11 seq.)
>WENV170605025
FUWD010441884
[FUWD] metagenome; unknown
272
348
+
Asn
GTT
[ENA]
¢þ
>WENV170611717
FUWD012382288
[FUWD] metagenome; unknown
347
271
-
Asn
GTT
[ENA]
¢þ
>SRA1020296
SRR035083.92629
454 Sequencing (SRP001804)
381
305
-
Asn
GTT
[SRA]
>SRA1022132
SRR035083.356725
454 Sequencing (SRP001804)
115
39
-
Asn
GTT
[SRA]
>SRA1040263
SRR035091.68234
454 Sequencing (SRP001812)
277
201
-
Asn
GTT
[SRA]
>SRA1041173
SRR035091.208959
454 Sequencing (SRP001812)
277
201
-
Asn
GTT
[SRA]
>SRA1047664
SRR035094.16221
454 Sequencing (SRP001815)
352
276
-
Asn
GTT
[SRA]
>SRA1047778
SRR035094.39795
454 Sequencing (SRP001815)
123
47
-
Asn
GTT
[SRA]
>SRA1049347
SRR035095.61108
454 Sequencing (SRP001816)
351
275
-
Asn
GTT
[SRA]
>SRA1049411
SRR035095.73645
454 Sequencing (SRP001816)
351
275
-
Asn
GTT
[SRA]
>SRA1049823
SRR035095.143192
454 Sequencing (SRP001816)
351
275
-
Asn
GTT
[SRA]
Identical group No.358363 (5 seq.)
>WENV170612507
FUWD012625929
[FUWD] metagenome; unknown
30
105
+
Asn
GTT
[ENA]
¢þ
>SRA1021964
SRR035083.332324
454 Sequencing (SRP001804)
82
157
+
Asn
GTT
[SRA]
>SRA1032596
SRR035088.59191
454 Sequencing (SRP001809)
66
141
+
Asn
GTT
[SRA]
>SRA1041891
SRR035091.311134
454 Sequencing (SRP001812)
30
105
+
Asn
GTT
[SRA]
>SRA1042612
SRR035091.416355
454 Sequencing (SRP001812)
29
104
+
Asn
GTT
[SRA]
Identical group No.446024 (1 seq.)
>SRA1021504
SRR035083.267244
454 Sequencing (SRP001804)
337
413
+
Asn
GTT
[SRA]
Identical group No.446049 (1 seq.)
>SRA1022416
SRR035083.402958
454 Sequencing (SRP001804)
205
129
-
Asn
GTT
[SRA]
Identical group No.446054 (1 seq.)
>SRA1022659
SRR035083.438213
454 Sequencing (SRP001804)
186
262
+
Asn
GTT
[SRA]
Identical group No.484486 (10 seq.)
>WENV170619890
FUWD013022584
[FUWD] metagenome; unknown
9692
9767
+
Asn
GTT
[ENA]
¢þ
>WENV170628010
FUWD013240735
[FUWD] metagenome; unknown
9692
9767
+
Asn
GTT
[ENA]
¢þ
>SRA1020122
SRR035083.59598
454 Sequencing (SRP001804)
454
528
+
Asn
GTT
[SRA]
>SRA1020354
SRR035083.101182
454 Sequencing (SRP001804)
315
240
-
Asn
GTT
[SRA]
>SRA1021340
SRR035083.245619
454 Sequencing (SRP001804)
250
325
+
Asn
GTT
[SRA]
>SRA1031760
SRR035087.482911
454 Sequencing (SRP001808)
297
370
+
Asn
GTT
[SRA]
>SRA1038868
SRR035090.384732
454 Sequencing (SRP001811)
250
325
+
Asn
GTT
[SRA]
>SRA1039204
SRR035090.443145
454 Sequencing (SRP001811)
277
202
-
Asn
GTT
[SRA]
>SRA1039570
SRR035090.517896
454 Sequencing (SRP001811)
98
173
+
Asn
GTT
[SRA]
>SRA1054453
SRR035099.135243
454 Sequencing (SRP001820)
164
89
-
Asn
GTT
[SRA]
Identical group No.547971 (6 seq.)
>WENV170607762
FUWD010854731
[FUWD] metagenome; unknown
256
183
-
Asn
GTT
[ENA]
¢þ
>SRA1020670
SRR035083.150021
454 Sequencing (SRP001804)
213
140
-
Asn
GTT
[SRA]
>SRA1021199
SRR035083.222727
454 Sequencing (SRP001804)
213
140
-
Asn
GTT
[SRA]
>SRA1037992
SRR035090.230643
454 Sequencing (SRP001811)
337
410
+
Asn
GTT
[SRA]
>SRA1038250
SRR035090.273071
454 Sequencing (SRP001811)
335
408
+
Asn
GTT
[SRA]
>SRA1038561
SRR035090.327824
454 Sequencing (SRP001811)
339
412
+
Asn
GTT
[SRA]
Identical group No.647171 (1 seq.)
>SRA1020743
SRR035083.158276
454 Sequencing (SRP001804)
84
159
+
Asn
GTT
[SRA]
Identical group No.647191 (1 seq.)
>SRA1021649
SRR035083.287238
454 Sequencing (SRP001804)
74
1
-
Asn
GTT
[SRA]
Identical group No.647195 (1 seq.)
>SRA1021765
SRR035083.305937
454 Sequencing (SRP001804)
233
157
-
Asn
GTT
[SRA]
Identical group No.647203 (1 seq.)
>SRA1021927
SRR035083.328752
454 Sequencing (SRP001804)
389
461
+
Asn
GTT
[SRA]
Identical group No.647226 (1 seq.)
>SRA1022431
SRR035083.404656
454 Sequencing (SRP001804)
423
347
-
Asn
GTT
[SRA]
Identical group No.647233 (1 seq.)
>SRA1022726
SRR035083.448747
454 Sequencing (SRP001804)
248
174
-
Asn
GTT
[SRA]
Identical group No.654615 (105 seq.)
>WENV170619430
FUWD013014054
[FUWD] metagenome; unknown
25360
25286
-
Asn
GTT
[ENA]
¢þ
>SRA1016765
SRR035082.22932
454 Sequencing (SRP001803)
192
266
+
Asn
GTT
[SRA]
>SRA1017767
SRR035082.193095
454 Sequencing (SRP001803)
235
309
+
Asn
GTT
[SRA]
>SRA1018916
SRR035082.369903
454 Sequencing (SRP001803)
40
114
+
Asn
GTT
[SRA]
>SRA1019894
SRR035083.17240
454 Sequencing (SRP001804)
28
102
+
Asn
GTT
[SRA]
>SRA1019987
SRR035083.36931
454 Sequencing (SRP001804)
327
253
-
Asn
GTT
[SRA]
>SRA1020006
SRR035083.40195
454 Sequencing (SRP001804)
379
305
-
Asn
GTT
[SRA]
>SRA1020010
SRR035083.40872
454 Sequencing (SRP001804)
120
194
+
Asn
GTT
[SRA]
>SRA1020075
SRR035083.54098
454 Sequencing (SRP001804)
401
474
+
Asn
GTT
[SRA]
>SRA1020127
SRR035083.60771
454 Sequencing (SRP001804)
352
278
-
Asn
GTT
[SRA]
>SRA1020213
SRR035083.75322
454 Sequencing (SRP001804)
368
294
-
Asn
GTT
[SRA]
>SRA1020221
SRR035083.76209
454 Sequencing (SRP001804)
192
118
-
Asn
GTT
[SRA]
>SRA1020251
SRR035083.82970
454 Sequencing (SRP001804)
357
283
-
Asn
GTT
[SRA]
>SRA1020423
SRR035083.112641
454 Sequencing (SRP001804)
316
390
+
Asn
GTT
[SRA]
>SRA1020437
SRR035083.115567
454 Sequencing (SRP001804)
255
329
+
Asn
GTT
[SRA]
>SRA1020498
SRR035083.123575
454 Sequencing (SRP001804)
162
88
-
Asn
GTT
[SRA]
>SRA1020500
SRR035083.124595
454 Sequencing (SRP001804)
55
129
+
Asn
GTT
[SRA]
>SRA1020660
SRR035083.148297
454 Sequencing (SRP001804)
282
208
-
Asn
GTT
[SRA]
>SRA1020698
SRR035083.153537
454 Sequencing (SRP001804)
406
332
-
Asn
GTT
[SRA]
>SRA1020879
SRR035083.177479
454 Sequencing (SRP001804)
154
228
+
Asn
GTT
[SRA]
>SRA1020881
SRR035083.178395
454 Sequencing (SRP001804)
407
333
-
Asn
GTT
[SRA]
>SRA1021034
SRR035083.200825
454 Sequencing (SRP001804)
369
295
-
Asn
GTT
[SRA]
>SRA1021062
SRR035083.204589
454 Sequencing (SRP001804)
55
129
+
Asn
GTT
[SRA]
>SRA1021147
SRR035083.214712
454 Sequencing (SRP001804)
68
142
+
Asn
GTT
[SRA]
>SRA1021149
SRR035083.215003
454 Sequencing (SRP001804)
12
86
+
Asn
GTT
[SRA]
>SRA1021153
SRR035083.216386
454 Sequencing (SRP001804)
346
420
+
Asn
GTT
[SRA]
>SRA1021254
SRR035083.229848
454 Sequencing (SRP001804)
281
207
-
Asn
GTT
[SRA]
>SRA1021283
SRR035083.236057
454 Sequencing (SRP001804)
174
100
-
Asn
GTT
[SRA]
>SRA1021379
SRR035083.252964
454 Sequencing (SRP001804)
283
209
-
Asn
GTT
[SRA]
>SRA1021414
SRR035083.255761
454 Sequencing (SRP001804)
330
256
-
Asn
GTT
[SRA]
>SRA1021500
SRR035083.266380
454 Sequencing (SRP001804)
175
249
+
Asn
GTT
[SRA]
>SRA1021695
SRR035083.293044
454 Sequencing (SRP001804)
281
207
-
Asn
GTT
[SRA]
>SRA1021760
SRR035083.304754
454 Sequencing (SRP001804)
224
150
-
Asn
GTT
[SRA]
>SRA1021790
SRR035083.310012
454 Sequencing (SRP001804)
155
229
+
Asn
GTT
[SRA]
>SRA1021851
SRR035083.317583
454 Sequencing (SRP001804)
289
215
-
Asn
GTT
[SRA]
>SRA1021973
SRR035083.333172
454 Sequencing (SRP001804)
28
102
+
Asn
GTT
[SRA]
>SRA1022049
SRR035083.345630
454 Sequencing (SRP001804)
174
100
-
Asn
GTT
[SRA]
>SRA1022226
SRR035083.371020
454 Sequencing (SRP001804)
225
151
-
Asn
GTT
[SRA]
>SRA1022237
SRR035083.373067
454 Sequencing (SRP001804)
169
95
-
Asn
GTT
[SRA]
>SRA1022254
SRR035083.375310
454 Sequencing (SRP001804)
312
238
-
Asn
GTT
[SRA]
>SRA1022356
SRR035083.395664
454 Sequencing (SRP001804)
67
141
+
Asn
GTT
[SRA]
>SRA1022386
SRR035083.398903
454 Sequencing (SRP001804)
135
209
+
Asn
GTT
[SRA]
>SRA1022515
SRR035083.418617
454 Sequencing (SRP001804)
219
145
-
Asn
GTT
[SRA]
>SRA1022529
SRR035083.421433
454 Sequencing (SRP001804)
204
130
-
Asn
GTT
[SRA]
>SRA1022635
SRR035083.435642
454 Sequencing (SRP001804)
46
120
+
Asn
GTT
[SRA]
>SRA1022688
SRR035083.442865
454 Sequencing (SRP001804)
13
87
+
Asn
GTT
[SRA]
>SRA1022928
SRR035083.489030
454 Sequencing (SRP001804)
34
108
+
Asn
GTT
[SRA]
>SRA1022953
SRR035083.493986
454 Sequencing (SRP001804)
28
102
+
Asn
GTT
[SRA]
>SRA1022962
SRR035083.495100
454 Sequencing (SRP001804)
286
212
-
Asn
GTT
[SRA]
>SRA1022972
SRR035083.498232
454 Sequencing (SRP001804)
225
299
+
Asn
GTT
[SRA]
>SRA1033125
SRR035088.179554
454 Sequencing (SRP001809)
263
189
-
Asn
GTT
[SRA]
>SRA1033449
SRR035088.259876
454 Sequencing (SRP001809)
194
120
-
Asn
GTT
[SRA]
>SRA1033531
SRR035088.280315
454 Sequencing (SRP001809)
36
110
+
Asn
GTT
[SRA]
>SRA1036291
SRR035089.488383
454 Sequencing (SRP001810)
256
330
+
Asn
GTT
[SRA]
>SRA1036746
SRR035089.603262
454 Sequencing (SRP001810)
391
317
-
Asn
GTT
[SRA]
>SRA1036840
SRR035090.21390
454 Sequencing (SRP001811)
221
295
+
Asn
GTT
[SRA]
>SRA1036841
SRR035090.21906
454 Sequencing (SRP001811)
75
1
-
Asn
GTT
[SRA]
>SRA1036859
SRR035090.26584
454 Sequencing (SRP001811)
75
1
-
Asn
GTT
[SRA]
>SRA1036883
SRR035090.31253
454 Sequencing (SRP001811)
312
238
-
Asn
GTT
[SRA]
>SRA1036954
SRR035090.45625
454 Sequencing (SRP001811)
47
121
+
Asn
GTT
[SRA]
>SRA1036989
SRR035090.53552
454 Sequencing (SRP001811)
356
282
-
Asn
GTT
[SRA]
>SRA1037009
SRR035090.58406
454 Sequencing (SRP001811)
46
120
+
Asn
GTT
[SRA]
>SRA1037223
SRR035090.95716
454 Sequencing (SRP001811)
357
283
-
Asn
GTT
[SRA]
>SRA1037372
SRR035090.124230
454 Sequencing (SRP001811)
121
47
-
Asn
GTT
[SRA]
>SRA1037405
SRR035090.129379
454 Sequencing (SRP001811)
355
281
-
Asn
GTT
[SRA]
>SRA1037425
SRR035090.134388
454 Sequencing (SRP001811)
358
284
-
Asn
GTT
[SRA]
>SRA1037521
SRR035090.146689
454 Sequencing (SRP001811)
357
283
-
Asn
GTT
[SRA]
>SRA1037565
SRR035090.155551
454 Sequencing (SRP001811)
176
250
+
Asn
GTT
[SRA]
>SRA1037700
SRR035090.175913
454 Sequencing (SRP001811)
365
291
-
Asn
GTT
[SRA]
>SRA1037859
SRR035090.206073
454 Sequencing (SRP001811)
347
421
+
Asn
GTT
[SRA]
>SRA1037929
SRR035090.220777
454 Sequencing (SRP001811)
18
92
+
Asn
GTT
[SRA]
>SRA1038098
SRR035090.244899
454 Sequencing (SRP001811)
270
196
-
Asn
GTT
[SRA]
>SRA1038132
SRR035090.250130
454 Sequencing (SRP001811)
130
204
+
Asn
GTT
[SRA]
>SRA1038133
SRR035090.251686
454 Sequencing (SRP001811)
411
337
-
Asn
GTT
[SRA]
>SRA1038142
SRR035090.253616
454 Sequencing (SRP001811)
204
278
+
Asn
GTT
[SRA]
>SRA1038190
SRR035090.261513
454 Sequencing (SRP001811)
88
162
+
Asn
GTT
[SRA]
>SRA1038221
SRR035090.266999
454 Sequencing (SRP001811)
357
283
-
Asn
GTT
[SRA]
>SRA1038629
SRR035090.339159
454 Sequencing (SRP001811)
201
127
-
Asn
GTT
[SRA]
>SRA1038791
SRR035090.367242
454 Sequencing (SRP001811)
69
143
+
Asn
GTT
[SRA]
>SRA1038941
SRR035090.397944
454 Sequencing (SRP001811)
214
288
+
Asn
GTT
[SRA]
>SRA1039111
SRR035090.427840
454 Sequencing (SRP001811)
264
338
+
Asn
GTT
[SRA]
>SRA1039113
SRR035090.428117
454 Sequencing (SRP001811)
350
423
+
Asn
GTT
[SRA]
>SRA1039146
SRR035090.432293
454 Sequencing (SRP001811)
117
191
+
Asn
GTT
[SRA]
>SRA1039270
SRR035090.455239
454 Sequencing (SRP001811)
281
207
-
Asn
GTT
[SRA]
>SRA1039330
SRR035090.467964
454 Sequencing (SRP001811)
174
248
+
Asn
GTT
[SRA]
>SRA1039395
SRR035090.483060
454 Sequencing (SRP001811)
390
316
-
Asn
GTT
[SRA]
>SRA1039437
SRR035090.491654
454 Sequencing (SRP001811)
175
249
+
Asn
GTT
[SRA]
>SRA1039538
SRR035090.511173
454 Sequencing (SRP001811)
156
230
+
Asn
GTT
[SRA]
>SRA1039687
SRR035090.544895
454 Sequencing (SRP001811)
363
289
-
Asn
GTT
[SRA]
>SRA1039698
SRR035090.547691
454 Sequencing (SRP001811)
179
253
+
Asn
GTT
[SRA]
>SRA1039874
SRR035090.588945
454 Sequencing (SRP001811)
361
287
-
Asn
GTT
[SRA]
>SRA1039890
SRR035090.593696
454 Sequencing (SRP001811)
229
155
-
Asn
GTT
[SRA]
>SRA1039941
SRR035090.609282
454 Sequencing (SRP001811)
344
418
+
Asn
GTT
[SRA]
>SRA1044535
SRR035092.295664
454 Sequencing (SRP001813)
202
128
-
Asn
GTT
[SRA]
>SRA1046221
SRR035093.255893
454 Sequencing (SRP001814)
350
276
-
Asn
GTT
[SRA]
>SRA1047303
SRR035093.506007
454 Sequencing (SRP001814)
75
149
+
Asn
GTT
[SRA]
>SRA1047351
SRR035093.519163
454 Sequencing (SRP001814)
51
125
+
Asn
GTT
[SRA]
>SRA1047712
SRR035094.27286
454 Sequencing (SRP001815)
197
123
-
Asn
GTT
[SRA]
>SRA1053983
SRR035099.25748
454 Sequencing (SRP001820)
185
259
+
Asn
GTT
[SRA]
>SRA1054337
SRR035099.108459
454 Sequencing (SRP001820)
193
119
-
Asn
GTT
[SRA]
>SRA1054400
SRR035099.125066
454 Sequencing (SRP001820)
81
155
+
Asn
GTT
[SRA]
>SRA1054455
SRR035099.135550
454 Sequencing (SRP001820)
67
141
+
Asn
GTT
[SRA]
>SRA1054507
SRR035099.148885
454 Sequencing (SRP001820)
302
376
+
Asn
GTT
[SRA]
>SRA1054553
SRR035099.161115
454 Sequencing (SRP001820)
168
242
+
Asn
GTT
[SRA]
>SRA1054557
SRR035099.162508
454 Sequencing (SRP001820)
390
316
-
Asn
GTT
[SRA]
Identical group No.710654 (3 seq.)
>WENV170604968
FUWD010438562
[FUWD] metagenome; unknown
6
80
+
Asn
GTT
[ENA]
¢þ
>SRA1019245
SRR035082.422731
454 Sequencing (SRP001803)
70
144
+
Asn
GTT
[SRA]
>SRA1022975
SRR035083.499080
454 Sequencing (SRP001804)
387
313
-
Asn
GTT
[SRA]
Identical group No.710806 (4 seq.)
>WENV170608097
FUWD010892890
[FUWD] metagenome; unknown
48
122
+
Asn
GTT
[ENA]
¢þ
>SRA1021522
SRR035083.268958
454 Sequencing (SRP001804)
400
474
+
Asn
GTT
[SRA]
>SRA1040265
SRR035091.68988
454 Sequencing (SRP001812)
29
103
+
Asn
GTT
[SRA]
>SRA1042840
SRR035091.453614
454 Sequencing (SRP001812)
430
356
-
Asn
GTT
[SRA]
Identical group No.775571 (3 seq.)
>SRA1020055
SRR035083.49626
454 Sequencing (SRP001804)
163
89
-
Asn
GTT
[SRA]
>SRA1020958
SRR035083.190301
454 Sequencing (SRP001804)
163
89
-
Asn
GTT
[SRA]
>SRA1021001
SRR035083.195570
454 Sequencing (SRP001804)
163
89
-
Asn
GTT
[SRA]
Identical group No.775575 (2 seq.)
>SRA1020476
SRR035083.120733
454 Sequencing (SRP001804)
196
270
+
Asn
GTT
[SRA]
>SRA1021033
SRR035083.200727
454 Sequencing (SRP001804)
196
270
+
Asn
GTT
[SRA]
Identical group No.775580 (1 seq.)
>SRA1020838
SRR035083.171589
454 Sequencing (SRP001804)
333
407
+
Asn
GTT
[SRA]
Identical group No.775594 (1 seq.)
>SRA1021657
SRR035083.288036
454 Sequencing (SRP001804)
420
493
+
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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